HEADER HYDROLASE 15-JAN-14 4OFZ TITLE STRUCTURE OF UNLIGANDED TREHALOSE-6-PHOSPHATE PHOSPHATASE FROM BRUGIA TITLE 2 MALAYI COMPND MOL_ID: 1; COMPND 2 MOLECULE: TREHALOSE-PHOSPHATASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TREHALOSE-6-PHOSPHATE PHOSPHATASE, TPP; COMPND 5 EC: 3.1.3.12; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRUGIA MALAYI; SOURCE 3 ORGANISM_COMMON: AGENT OF LYMPHATIC FILARIASIS; SOURCE 4 ORGANISM_TAXID: 6279; SOURCE 5 GENE: BM1_08695; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-15(TEV) KEYWDS HAD SUPERFAMILY/ROSSMANN FOLD, TREHALOSE-6-PHOSPHATE KEYWDS 2 PHOSPHOHYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.D.FARELLI,K.N.ALLEN,C.K.S.CARLOW,D.DUNAWAY-MARIANO REVDAT 3 20-NOV-24 4OFZ 1 REMARK SEQADV LINK REVDAT 2 24-JAN-18 4OFZ 1 AUTHOR REVDAT 1 16-JUL-14 4OFZ 0 JRNL AUTH J.D.FARELLI,B.D.GALVIN,Z.LI,C.LIU,M.AONO,M.GARLAND, JRNL AUTH 2 O.E.HALLETT,T.B.CAUSEY,A.ALI-REYNOLDS,D.J.SALTZBERG, JRNL AUTH 3 C.K.CARLOW,D.DUNAWAY-MARIANO,K.N.ALLEN JRNL TITL STRUCTURE OF THE TREHALOSE-6-PHOSPHATE PHOSPHATASE FROM JRNL TITL 2 BRUGIA MALAYI REVEALS KEY DESIGN PRINCIPLES FOR ANTHELMINTIC JRNL TITL 3 DRUGS. JRNL REF PLOS PATHOG. V. 10 04245 2014 JRNL REFN ISSN 1553-7366 JRNL PMID 24992307 JRNL DOI 10.1371/JOURNAL.PPAT.1004245 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 16791 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1679 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9086 - 6.7843 1.00 1374 153 0.1912 0.2190 REMARK 3 2 6.7843 - 5.4207 1.00 1294 144 0.2541 0.3401 REMARK 3 3 5.4207 - 4.7460 1.00 1269 142 0.2054 0.2675 REMARK 3 4 4.7460 - 4.3169 1.00 1258 139 0.1805 0.2346 REMARK 3 5 4.3169 - 4.0102 1.00 1261 140 0.2000 0.2472 REMARK 3 6 4.0102 - 3.7755 1.00 1254 139 0.2118 0.2579 REMARK 3 7 3.7755 - 3.5875 1.00 1244 139 0.2305 0.2582 REMARK 3 8 3.5875 - 3.4322 1.00 1233 137 0.2317 0.3344 REMARK 3 9 3.4322 - 3.3007 1.00 1243 137 0.2565 0.3366 REMARK 3 10 3.3007 - 3.1873 1.00 1230 137 0.2514 0.3444 REMARK 3 11 3.1873 - 3.0880 1.00 1224 136 0.2497 0.3675 REMARK 3 12 3.0880 - 3.0000 1.00 1228 136 0.2845 0.3212 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 3354 REMARK 3 ANGLE : 1.722 4525 REMARK 3 CHIRALITY : 0.065 517 REMARK 3 PLANARITY : 0.008 577 REMARK 3 DIHEDRAL : 16.758 1258 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4OFZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000084444. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16791 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15 MG/ML, CRYSTALLIZATION BUFFER: 33% REMARK 280 PEG 300, 0.1 M SODIUM CITRATE PH 5.0, 13% ETHYLENE GLYCOL (EG) REMARK 280 AND 10 MM COCL2. FOR CRYOPROTECTION, THE CONCENTRATION OF EG WAS REMARK 280 SLOWLY INCREASED TO 25% BY ADDING A CONCENTRATED SOLUTION REMARK 280 DIRECTLY TO THE CRYSTAL DROP. CRYSTALS WERE HARVESTED USING REMARK 280 CRYOLOOPS (HAMPTON RESEARCH), LOOPED THROUGH LV CRYOOIL (MITEGEN) REMARK 280 , FROZEN IN LIQUID NITROGEN, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.18733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 66.37467 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 33.18733 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 66.37467 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 33.18733 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 66.37467 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 33.18733 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 66.37467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 33.18733 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 GLY A -20 REMARK 465 SER A -19 REMARK 465 SER A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 SER A -11 REMARK 465 SER A -10 REMARK 465 GLY A -9 REMARK 465 GLY A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLU A 3 REMARK 465 THR A 4 REMARK 465 VAL A 5 REMARK 465 THR A 6 REMARK 465 ASP A 7 REMARK 465 GLN A 8 REMARK 465 GLY A 9 REMARK 465 LYS A 10 REMARK 465 GLN A 11 REMARK 465 ARG A 12 REMARK 465 SER A 13 REMARK 465 SER A 14 REMARK 465 LYS A 15 REMARK 465 LEU A 16 REMARK 465 GLN A 17 REMARK 465 LYS A 18 REMARK 465 ASN A 19 REMARK 465 GLU A 20 REMARK 465 ALA A 21 REMARK 465 ALA A 22 REMARK 465 LYS A 23 REMARK 465 ASP A 24 REMARK 465 GLU A 25 REMARK 465 GLN A 26 REMARK 465 VAL A 27 REMARK 465 GLU A 28 REMARK 465 GLY A 29 REMARK 465 LYS A 30 REMARK 465 GLY A 31 REMARK 465 LYS A 32 REMARK 465 GLU A 33 REMARK 465 THR A 34 REMARK 465 LEU A 35 REMARK 465 GLU A 36 REMARK 465 SER A 37 REMARK 465 GLY A 38 REMARK 465 THR A 39 REMARK 465 ASP A 40 REMARK 465 LYS A 41 REMARK 465 SER A 42 REMARK 465 ALA A 43 REMARK 465 GLU A 44 REMARK 465 GLN A 45 REMARK 465 ASN A 46 REMARK 465 SER A 47 REMARK 465 SER A 48 REMARK 465 LEU A 49 REMARK 465 LEU A 50 REMARK 465 VAL A 51 REMARK 465 GLY A 52 REMARK 465 GLN A 53 REMARK 465 PRO A 54 REMARK 465 ASP A 55 REMARK 465 VAL A 56 REMARK 465 ILE A 57 REMARK 465 ASP A 58 REMARK 465 ASN A 59 REMARK 465 ASP A 60 REMARK 465 ASN A 61 REMARK 465 VAL A 62 REMARK 465 GLN A 111 REMARK 465 THR A 112 REMARK 465 HIS A 113 REMARK 465 SER A 114 REMARK 465 ASP A 320 REMARK 465 TYR A 321 REMARK 465 ALA A 322 REMARK 465 ARG A 367 REMARK 465 VAL A 368 REMARK 465 ASP A 369 REMARK 465 PRO A 370 REMARK 465 LYS A 492 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 257 O HOH A 667 1.90 REMARK 500 N LEU A 263 O HOH A 667 2.02 REMARK 500 O SER A 392 O HOH A 631 2.08 REMARK 500 O HOH A 609 O HOH A 685 2.11 REMARK 500 O THR A 425 O HOH A 671 2.12 REMARK 500 O ARG A 467 O HOH A 643 2.13 REMARK 500 O GLY A 491 O HOH A 605 2.14 REMARK 500 NZ LYS A 398 OD1 ASP A 428 2.15 REMARK 500 OH TYR A 221 OD2 ASP A 424 2.15 REMARK 500 O HOH A 627 O HOH A 655 2.17 REMARK 500 OG1 THR A 298 N GLU A 300 2.18 REMARK 500 NZ LYS A 69 O HOH A 668 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 THR A 298 CA THR A 298 CB -0.162 REMARK 500 GLU A 300 CB GLU A 300 CG 0.118 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 177 C - N - CA ANGL. DEV. = 17.4 DEGREES REMARK 500 PRO A 177 C - N - CD ANGL. DEV. = -14.1 DEGREES REMARK 500 ILE A 297 N - CA - C ANGL. DEV. = -17.4 DEGREES REMARK 500 THR A 298 CA - CB - CG2 ANGL. DEV. = -14.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 109 -68.58 -139.14 REMARK 500 THR A 121 -89.42 -110.40 REMARK 500 LEU A 122 -69.05 -137.53 REMARK 500 HIS A 176 163.47 174.84 REMARK 500 TRP A 214 -73.24 -100.41 REMARK 500 THR A 217 -60.73 -106.45 REMARK 500 ILE A 270 -28.52 76.23 REMARK 500 THR A 298 -161.54 -115.89 REMARK 500 ALA A 325 -86.10 -77.34 REMARK 500 LEU A 326 69.73 25.30 REMARK 500 VAL A 331 73.67 46.42 REMARK 500 THR A 350 77.31 42.04 REMARK 500 ASP A 378 131.71 -179.16 REMARK 500 ILE A 395 72.73 61.43 REMARK 500 ASP A 424 -49.36 -132.65 REMARK 500 ALA A 450 -169.09 -68.33 REMARK 500 ILE A 462 -168.78 -123.49 REMARK 500 GLU A 465 -21.73 79.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 116 ARG A 117 -148.53 REMARK 500 ARG A 258 GLY A 259 -147.37 REMARK 500 THR A 298 ASP A 299 141.96 REMARK 500 ALA A 325 LEU A 326 129.01 REMARK 500 GLY A 449 ALA A 450 -146.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 213 OD1 REMARK 620 2 ASP A 215 O 63.6 REMARK 620 3 ASP A 424 OD1 62.8 73.2 REMARK 620 4 HOH A 653 O 72.9 132.7 71.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 501 DBREF 4OFZ A 1 492 UNP A8NS89 GOB1_BRUMA 1 492 SEQADV 4OFZ MET A -21 UNP A8NS89 EXPRESSION TAG SEQADV 4OFZ GLY A -20 UNP A8NS89 EXPRESSION TAG SEQADV 4OFZ SER A -19 UNP A8NS89 EXPRESSION TAG SEQADV 4OFZ SER A -18 UNP A8NS89 EXPRESSION TAG SEQADV 4OFZ HIS A -17 UNP A8NS89 EXPRESSION TAG SEQADV 4OFZ HIS A -16 UNP A8NS89 EXPRESSION TAG SEQADV 4OFZ HIS A -15 UNP A8NS89 EXPRESSION TAG SEQADV 4OFZ HIS A -14 UNP A8NS89 EXPRESSION TAG SEQADV 4OFZ HIS A -13 UNP A8NS89 EXPRESSION TAG SEQADV 4OFZ HIS A -12 UNP A8NS89 EXPRESSION TAG SEQADV 4OFZ SER A -11 UNP A8NS89 EXPRESSION TAG SEQADV 4OFZ SER A -10 UNP A8NS89 EXPRESSION TAG SEQADV 4OFZ GLY A -9 UNP A8NS89 EXPRESSION TAG SEQADV 4OFZ GLY A -8 UNP A8NS89 EXPRESSION TAG SEQADV 4OFZ GLU A -7 UNP A8NS89 EXPRESSION TAG SEQADV 4OFZ ASN A -6 UNP A8NS89 EXPRESSION TAG SEQADV 4OFZ LEU A -5 UNP A8NS89 EXPRESSION TAG SEQADV 4OFZ TYR A -4 UNP A8NS89 EXPRESSION TAG SEQADV 4OFZ PHE A -3 UNP A8NS89 EXPRESSION TAG SEQADV 4OFZ GLN A -2 UNP A8NS89 EXPRESSION TAG SEQADV 4OFZ GLY A -1 UNP A8NS89 EXPRESSION TAG SEQADV 4OFZ HIS A 0 UNP A8NS89 EXPRESSION TAG SEQRES 1 A 514 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 514 GLY GLU ASN LEU TYR PHE GLN GLY HIS MET THR GLU THR SEQRES 3 A 514 VAL THR ASP GLN GLY LYS GLN ARG SER SER LYS LEU GLN SEQRES 4 A 514 LYS ASN GLU ALA ALA LYS ASP GLU GLN VAL GLU GLY LYS SEQRES 5 A 514 GLY LYS GLU THR LEU GLU SER GLY THR ASP LYS SER ALA SEQRES 6 A 514 GLU GLN ASN SER SER LEU LEU VAL GLY GLN PRO ASP VAL SEQRES 7 A 514 ILE ASP ASN ASP ASN VAL GLN THR VAL ASP ASP PHE LYS SEQRES 8 A 514 ASN LEU MET TYR LYS MET GLN GLU THR ARG ARG ALA ILE SEQRES 9 A 514 VAL PHE ALA LEU LEU ASN GLU LYS ASP LEU THR LYS ASP SEQRES 10 A 514 ASP VAL GLU ILE LEU LYS ARG ALA TYR GLU LYS LEU THR SEQRES 11 A 514 ASP ASN GLN THR HIS SER PHE GLN ARG GLU MET CYS THR SEQRES 12 A 514 LEU THR THR LYS LEU SER VAL ASN ILE GLY ASP GLU THR SEQRES 13 A 514 ARG GLY LEU GLU LYS ASP LEU LYS TYR LEU ASP ALA LEU SEQRES 14 A 514 MET ASN ILE ARG ARG GLU GLU PRO ASN LEU LEU TRP PRO SEQRES 15 A 514 ILE ILE MET SER ARG VAL ASP LEU PHE SER ILE LEU ALA SEQRES 16 A 514 ASN TYR HIS PRO LYS GLY LYS GLU THR PHE LEU LYS GLU SEQRES 17 A 514 TYR GLU ASP THR VAL LYS PHE LEU LYS THR PHE ILE SER SEQRES 18 A 514 SER GLU ALA ILE THR GLY LYS LYS PRO ILE PHE ILE THR SEQRES 19 A 514 ASP TRP ASP GLY THR MET LYS ASP TYR CYS SER GLN TYR SEQRES 20 A 514 ALA THR ASN LEU GLN PRO VAL TYR SER ALA VAL GLY MET SEQRES 21 A 514 THR ARG PHE ALA ALA SER PHE THR ARG ILE SER ALA VAL SEQRES 22 A 514 LEU THR ALA GLY PRO LEU ARG GLY PRO GLY ILE LEU ASP SEQRES 23 A 514 LEU THR ALA MET PRO ILE ASP GLY PRO VAL MET PHE SER SEQRES 24 A 514 GLY SER TRP GLY ARG GLU TRP TRP LEU SER GLY LYS ARG SEQRES 25 A 514 VAL VAL HIS GLN ASP GLY ILE THR ASP GLU GLY PHE ASN SEQRES 26 A 514 ALA LEU GLN ARG LEU ASP ASP GLU MET LYS ASP LEU LEU SEQRES 27 A 514 HIS THR SER ASP TYR ALA PRO PHE ALA LEU VAL GLY SER SEQRES 28 A 514 GLY VAL GLN ARG LYS VAL ASP ARG LEU THR LEU GLY VAL SEQRES 29 A 514 GLN THR VAL CYS HIS HIS VAL THR SER GLU LEU SER ASN SEQRES 30 A 514 ARG TYR GLN MET ALA VAL LYS GLU ARG MET HIS ARG VAL SEQRES 31 A 514 ASP PRO ASN SER GLN ILE LEU VAL PHE ASP PRO SER THR SEQRES 32 A 514 GLU LEU GLU VAL GLU VAL VAL ALA HIS ASN SER GLY ILE SEQRES 33 A 514 ILE TRP ASN LYS GLY ASN GLY VAL GLU ARG LEU ILE LYS SEQRES 34 A 514 SER LEU GLY ASP SER LEU GLN SER PRO GLY LYS ILE LEU SEQRES 35 A 514 ILE CYS GLY ASP THR LEU SER ASP ILE PRO MET VAL ARG SEQRES 36 A 514 GLN ALA VAL LYS GLN ASN PRO ASP GLY VAL LEU ALA ILE SEQRES 37 A 514 PHE VAL GLY ALA LYS MET SER LEU ARG GLU GLU VAL LYS SEQRES 38 A 514 GLN VAL ILE GLY ASP GLU SER ARG CYS CYS PHE VAL SER SEQRES 39 A 514 CYS PRO ASP VAL ILE HIS ALA ALA MET SER GLN ILE LEU SEQRES 40 A 514 ASN GLU HIS CYS ILE GLY LYS HET MG A 501 1 HETNAM MG MAGNESIUM ION FORMUL 2 MG MG 2+ FORMUL 3 HOH *87(H2 O) HELIX 1 1 THR A 64 ASN A 88 1 25 HELIX 2 2 THR A 93 THR A 108 1 16 HELIX 3 3 ILE A 130 ARG A 152 1 23 HELIX 4 4 LEU A 158 VAL A 166 1 9 HELIX 5 5 ASP A 167 ALA A 173 1 7 HELIX 6 6 GLY A 179 GLY A 205 1 27 HELIX 7 7 PRO A 231 THR A 246 1 16 HELIX 8 8 GLY A 261 THR A 266 1 6 HELIX 9 9 SER A 279 GLY A 281 5 3 HELIX 10 10 ASP A 299 HIS A 317 1 19 HELIX 11 11 THR A 350 MET A 365 1 16 HELIX 12 12 ASN A 397 LEU A 409 1 13 HELIX 13 13 THR A 425 SER A 427 5 3 HELIX 14 14 ASP A 428 ASN A 439 1 12 HELIX 15 15 LYS A 451 ILE A 462 1 12 HELIX 16 16 CYS A 473 GLY A 491 1 19 SHEET 1 A 2 GLU A 118 CYS A 120 0 SHEET 2 A 2 LYS A 125 SER A 127 -1 O LEU A 126 N MET A 119 SHEET 1 B 8 LYS A 289 VAL A 292 0 SHEET 2 B 8 GLU A 283 LEU A 286 -1 N LEU A 286 O LYS A 289 SHEET 3 B 8 VAL A 274 GLY A 278 -1 N GLY A 278 O GLU A 283 SHEET 4 B 8 ILE A 248 LEU A 252 1 N SER A 249 O MET A 275 SHEET 5 B 8 ILE A 209 ASP A 213 1 N PHE A 210 O ALA A 250 SHEET 6 B 8 ILE A 419 GLY A 423 1 O LEU A 420 N ILE A 211 SHEET 7 B 8 LEU A 444 VAL A 448 1 O LEU A 444 N ILE A 419 SHEET 8 B 8 CYS A 468 VAL A 471 1 O CYS A 469 N PHE A 447 SHEET 1 C 4 GLN A 332 ARG A 333 0 SHEET 2 C 4 ARG A 337 GLY A 341 -1 O THR A 339 N GLN A 332 SHEET 3 C 4 GLU A 384 VAL A 388 -1 O VAL A 385 N LEU A 340 SHEET 4 C 4 VAL A 376 ASP A 378 -1 N VAL A 376 O VAL A 388 SSBOND 1 CYS A 346 CYS A 346 1555 10555 2.03 LINK OD1 ASP A 213 MG MG A 501 1555 1555 2.84 LINK O ASP A 215 MG MG A 501 1555 1555 2.60 LINK OD1 ASP A 424 MG MG A 501 1555 1555 2.43 LINK MG MG A 501 O HOH A 653 1555 1555 2.27 CISPEP 1 GLU A 153 GLU A 154 0 -2.29 CISPEP 2 GLY A 259 PRO A 260 0 -17.61 CISPEP 3 LEU A 286 SER A 287 0 -27.23 CISPEP 4 ILE A 297 THR A 298 0 1.94 CISPEP 5 VAL A 345 CYS A 346 0 0.21 CISPEP 6 HIS A 390 ASN A 391 0 11.20 CISPEP 7 ASN A 391 SER A 392 0 7.14 CISPEP 8 ASP A 441 GLY A 442 0 21.51 CISPEP 9 VAL A 448 GLY A 449 0 -25.23 CISPEP 10 ASP A 464 GLU A 465 0 24.12 SITE 1 AC1 6 ASP A 213 ASP A 215 TYR A 221 ASP A 424 SITE 2 AC1 6 THR A 425 HOH A 653 CRYST1 166.940 166.940 99.562 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005990 0.003458 0.000000 0.00000 SCALE2 0.000000 0.006917 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010044 0.00000