HEADER TRANSFERASE 16-JAN-14 4OGU TITLE THE EFFECTS OF LYSINE 200 AND PHENYLALANINE 239 FARNESYL PYROPHOSPHATE TITLE 2 SYNTHASE (FPPS) MUTATIONS ON THE CATALYTIC ACTIVITY, CRYSTAL TITLE 3 STRUCTURE AND INHIBITION BY NITROGEN CONTAINING BISPHOSPHONATES COMPND MOL_ID: 1; COMPND 2 MOLECULE: FARNESYL PYROPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 67-419; COMPND 5 SYNONYM: FPP SYNTHASE, FPS, (2E,6E)-FARNESYL DIPHOSPHATE SYNTHASE, COMPND 6 DIMETHYLALLYLTRANSTRANSFERASE, FARNESYL DIPHOSPHATE SYNTHASE, COMPND 7 GERANYLTRANSTRANSFERASE; COMPND 8 EC: 2.5.1.10, 2.5.1.1; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FDPS, FPS, KIAA1293; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET 11 DERIVATIVE KEYWDS ALL ALPHA-HELICAL, PRENYLTRANSFERASE, TRANSFERASE, ISOPRENE KEYWDS 2 BIOSYNTHESIS, LIPID BIOSYNTHESIS, STEROID BIOSYNTHESIS, ISOPRENOID KEYWDS 3 PATHWAY, CHOLESTEROL SYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR M.K.TSOUMPRA,B.L.BARNETT,J.R.C.MUNIZ,R.L.WALTER,F.H.EBETINO,F.VON AUTHOR 2 DELFT,R.G.G.RUSSELL,U.OPPERMANN,J.E.DUNFORD REVDAT 3 20-SEP-23 4OGU 1 REMARK SEQADV LINK REVDAT 2 31-JAN-18 4OGU 1 AUTHOR JRNL REVDAT 1 21-JAN-15 4OGU 0 JRNL AUTH M.K.TSOUMPRA,B.L.BARNETT,J.R.C.MUNIZ,R.L.WALTER,F.H.EBETINO, JRNL AUTH 2 F.VON DELFT,R.G.G.RUSSELL,U.OPPERMANN,J.E.DUNFORD JRNL TITL THE EFFECTS OF LYSINE 200 AND PHENYLALANINE 239 FARNESYL JRNL TITL 2 PYROPHOSPHATE SYNTHASE (FPPS) MUTATIONS ON THE CATALYTIC JRNL TITL 3 ACTIVITY, CRYSTAL STRUCTURE AND INHIBITION BY NITROGEN JRNL TITL 4 CONTAINING BISPHOSPHONATES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 25116 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 1284 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 13 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.19 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.83 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2776 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2351 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2638 REMARK 3 BIN R VALUE (WORKING SET) : 0.2330 REMARK 3 BIN FREE R VALUE : 0.2748 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.97 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 138 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2636 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 109 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.24 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.57580 REMARK 3 B22 (A**2) : 1.57580 REMARK 3 B33 (A**2) : -3.15160 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.355 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.187 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2769 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3776 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1293 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 67 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 402 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2769 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 2 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 359 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3474 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.96 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.63 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.81 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|8 - 28} REMARK 3 ORIGIN FOR THE GROUP (A): -0.4512 30.4439 8.4617 REMARK 3 T TENSOR REMARK 3 T11: -0.3032 T22: -0.0909 REMARK 3 T33: 0.2375 T12: 0.1520 REMARK 3 T13: 0.1520 T23: -0.0905 REMARK 3 L TENSOR REMARK 3 L11: 2.0068 L22: 3.8177 REMARK 3 L33: 1.0337 L12: 1.5104 REMARK 3 L13: 0.5334 L23: -0.6367 REMARK 3 S TENSOR REMARK 3 S11: 0.0500 S12: -0.0877 S13: -0.0111 REMARK 3 S21: 0.0341 S22: -0.1280 S23: 0.1506 REMARK 3 S31: -0.1297 S32: -0.3425 S33: 0.0780 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|29 - 52} REMARK 3 ORIGIN FOR THE GROUP (A): 16.0080 25.7691 15.9039 REMARK 3 T TENSOR REMARK 3 T11: -0.2227 T22: -0.1946 REMARK 3 T33: 0.3040 T12: 0.0911 REMARK 3 T13: 0.1011 T23: -0.0369 REMARK 3 L TENSOR REMARK 3 L11: 2.3137 L22: 0.6002 REMARK 3 L33: 4.6370 L12: 1.6511 REMARK 3 L13: 0.0926 L23: -0.4542 REMARK 3 S TENSOR REMARK 3 S11: 0.0015 S12: -0.1958 S13: 0.0295 REMARK 3 S21: 0.2307 S22: -0.0545 S23: 0.1089 REMARK 3 S31: 0.0935 S32: -0.0967 S33: 0.0529 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|53 - 78} REMARK 3 ORIGIN FOR THE GROUP (A): -5.3050 26.0847 0.1502 REMARK 3 T TENSOR REMARK 3 T11: -0.3040 T22: 0.0383 REMARK 3 T33: 0.3040 T12: 0.1004 REMARK 3 T13: 0.0606 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 5.1811 L22: 0.6536 REMARK 3 L33: 2.6143 L12: -1.9218 REMARK 3 L13: 1.5270 L23: 0.9246 REMARK 3 S TENSOR REMARK 3 S11: 0.0137 S12: 0.0135 S13: -0.0638 REMARK 3 S21: 0.2207 S22: -0.0272 S23: 0.1954 REMARK 3 S31: -0.0083 S32: -0.4806 S33: 0.0135 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {A|79 - 152} REMARK 3 ORIGIN FOR THE GROUP (A): 11.2351 25.3705 4.0537 REMARK 3 T TENSOR REMARK 3 T11: -0.3040 T22: -0.2608 REMARK 3 T33: 0.3037 T12: 0.0729 REMARK 3 T13: 0.0474 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 3.0634 L22: 2.7846 REMARK 3 L33: 2.2380 L12: -0.0546 REMARK 3 L13: 0.7355 L23: 0.8315 REMARK 3 S TENSOR REMARK 3 S11: -0.0177 S12: -0.3966 S13: -0.1226 REMARK 3 S21: 0.1234 S22: 0.0122 S23: 0.1183 REMARK 3 S31: -0.1424 S32: -0.3784 S33: 0.0055 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {A|153 - 206} REMARK 3 ORIGIN FOR THE GROUP (A): 15.0724 24.5100 -13.8620 REMARK 3 T TENSOR REMARK 3 T11: -0.3040 T22: -0.1615 REMARK 3 T33: 0.3040 T12: 0.0627 REMARK 3 T13: -0.0448 T23: -0.0358 REMARK 3 L TENSOR REMARK 3 L11: 3.2173 L22: 1.9780 REMARK 3 L33: 2.6717 L12: 0.2622 REMARK 3 L13: -0.7745 L23: -1.5654 REMARK 3 S TENSOR REMARK 3 S11: -0.0121 S12: 0.3190 S13: -0.1208 REMARK 3 S21: -0.3016 S22: 0.0157 S23: 0.2508 REMARK 3 S31: 0.1755 S32: -0.0598 S33: -0.0037 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: {A|207 - 294} REMARK 3 ORIGIN FOR THE GROUP (A): 12.1143 34.8176 -16.2734 REMARK 3 T TENSOR REMARK 3 T11: -0.3040 T22: -0.1391 REMARK 3 T33: 0.3040 T12: 0.0457 REMARK 3 T13: -0.0513 T23: -0.0107 REMARK 3 L TENSOR REMARK 3 L11: 4.1372 L22: 1.8982 REMARK 3 L33: 1.0633 L12: 0.4695 REMARK 3 L13: 0.1231 L23: 0.2833 REMARK 3 S TENSOR REMARK 3 S11: -0.0467 S12: 0.5372 S13: 0.2931 REMARK 3 S21: -0.4066 S22: 0.0260 S23: 0.1989 REMARK 3 S31: -0.1716 S32: -0.0119 S33: 0.0207 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: {A|295 - 350} REMARK 3 ORIGIN FOR THE GROUP (A): 2.9424 37.9296 -18.9170 REMARK 3 T TENSOR REMARK 3 T11: -0.3040 T22: -0.1343 REMARK 3 T33: 0.3040 T12: 0.0918 REMARK 3 T13: -0.0893 T23: -0.0575 REMARK 3 L TENSOR REMARK 3 L11: 4.0158 L22: 2.3223 REMARK 3 L33: 1.2688 L12: -0.6065 REMARK 3 L13: 0.0091 L23: 0.3327 REMARK 3 S TENSOR REMARK 3 S11: 0.1816 S12: 0.2518 S13: 0.4017 REMARK 3 S21: -0.4163 S22: -0.3370 S23: 0.3262 REMARK 3 S31: -0.2527 S32: -0.1078 S33: 0.1554 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4OGU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000084475. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25116 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 51.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.700 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.60 REMARK 200 R MERGE (I) : 0.11400 REMARK 200 R SYM (I) : 0.11400 REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3CP6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NH4CL, PEG 6000, 10% ETHYLENE REMARK 280 GLYCOL, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.63500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 55.60500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 55.60500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 16.81750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 55.60500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 55.60500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 50.45250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 55.60500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.60500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 16.81750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 55.60500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.60500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 50.45250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 33.63500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -75.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 607 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 GLY A -20 REMARK 465 SER A -19 REMARK 465 SER A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 SER A -11 REMARK 465 SER A -10 REMARK 465 GLY A -9 REMARK 465 ARG A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 GLY A 3 REMARK 465 ASP A 4 REMARK 465 GLN A 5 REMARK 465 ASN A 6 REMARK 465 SER A 7 REMARK 465 ASP A 31 REMARK 465 GLU A 32 REMARK 465 MET A 33 REMARK 465 GLY A 34 REMARK 465 ARG A 351 REMARK 465 ARG A 352 REMARK 465 LYS A 353 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 8 CG OD1 OD2 REMARK 470 TYR A 10 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN A 12 CG CD OE1 NE2 REMARK 470 GLU A 13 CG CD OE1 OE2 REMARK 470 ASP A 16 CG OD1 OD2 REMARK 470 GLN A 19 CG CD OE1 NE2 REMARK 470 ARG A 26 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 30 CD OE1 OE2 REMARK 470 HIS A 35 CG ND1 CD2 CE1 NE2 REMARK 470 THR A 53 OG1 CG2 REMARK 470 GLU A 73 CG CD OE1 OE2 REMARK 470 ARG A 75 CD NE CZ NH1 NH2 REMARK 470 LYS A 121 CE NZ REMARK 470 GLN A 162 CG CD OE1 NE2 REMARK 470 GLN A 180 CG CD OE1 NE2 REMARK 470 VAL A 183 CG1 CG2 REMARK 470 ASP A 184 CG OD1 OD2 REMARK 470 ARG A 187 NE CZ NH1 NH2 REMARK 470 GLU A 222 CG CD OE1 OE2 REMARK 470 LYS A 223 CG CD CE NZ REMARK 470 LYS A 230 CE NZ REMARK 470 SER A 253 OG REMARK 470 GLU A 281 CG CD OE1 OE2 REMARK 470 LYS A 293 CG CD CE NZ REMARK 470 GLU A 296 CD OE1 OE2 REMARK 470 ARG A 300 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 307 CG CD OE1 OE2 REMARK 470 LYS A 350 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 124 -71.31 -100.10 REMARK 500 ALA A 178 60.39 -112.58 REMARK 500 THR A 201 -51.14 -128.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 103 OD2 REMARK 620 2 ASP A 107 OD2 93.7 REMARK 620 3 210 A 405 O2 93.3 172.2 REMARK 620 4 210 A 405 O10 94.6 85.7 97.2 REMARK 620 5 HOH A 504 O 142.1 65.8 110.2 54.3 REMARK 620 6 HOH A 593 O 79.2 97.6 80.3 173.2 132.5 REMARK 620 7 HOH A 594 O 158.7 86.0 86.3 106.6 56.1 79.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 103 OD1 REMARK 620 2 ASP A 107 OD2 95.6 REMARK 620 3 210 A 405 O10 101.4 89.0 REMARK 620 4 HOH A 586 O 90.7 173.5 88.1 REMARK 620 5 HOH A 587 O 88.3 99.1 166.7 82.7 REMARK 620 6 HOH A 588 O 162.6 100.8 84.8 73.1 83.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 243 OD2 REMARK 620 2 210 A 405 O9 101.8 REMARK 620 3 210 A 405 O5 94.5 89.2 REMARK 620 4 HOH A 590 O 90.6 94.6 172.9 REMARK 620 5 HOH A 591 O 81.3 172.7 84.0 91.9 REMARK 620 6 HOH A 592 O 168.6 87.9 79.6 94.5 88.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPE A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 210 A 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4N9U RELATED DB: PDB REMARK 900 RELATED ID: 4NG6 RELATED DB: PDB REMARK 900 RELATED ID: 1ZW5 RELATED DB: PDB REMARK 900 NATIVE STRUCTURE COMPLEXED WITH TWO LIGANDS. REMARK 900 RELATED ID: 4NUA RELATED DB: PDB DBREF 4OGU A 1 353 UNP P14324 FPPS_HUMAN 67 419 SEQADV 4OGU MET A -21 UNP P14324 EXPRESSION TAG SEQADV 4OGU GLY A -20 UNP P14324 EXPRESSION TAG SEQADV 4OGU SER A -19 UNP P14324 EXPRESSION TAG SEQADV 4OGU SER A -18 UNP P14324 EXPRESSION TAG SEQADV 4OGU HIS A -17 UNP P14324 EXPRESSION TAG SEQADV 4OGU HIS A -16 UNP P14324 EXPRESSION TAG SEQADV 4OGU HIS A -15 UNP P14324 EXPRESSION TAG SEQADV 4OGU HIS A -14 UNP P14324 EXPRESSION TAG SEQADV 4OGU HIS A -13 UNP P14324 EXPRESSION TAG SEQADV 4OGU HIS A -12 UNP P14324 EXPRESSION TAG SEQADV 4OGU SER A -11 UNP P14324 EXPRESSION TAG SEQADV 4OGU SER A -10 UNP P14324 EXPRESSION TAG SEQADV 4OGU GLY A -9 UNP P14324 EXPRESSION TAG SEQADV 4OGU ARG A -8 UNP P14324 EXPRESSION TAG SEQADV 4OGU GLU A -7 UNP P14324 EXPRESSION TAG SEQADV 4OGU ASN A -6 UNP P14324 EXPRESSION TAG SEQADV 4OGU LEU A -5 UNP P14324 EXPRESSION TAG SEQADV 4OGU TYR A -4 UNP P14324 EXPRESSION TAG SEQADV 4OGU PHE A -3 UNP P14324 EXPRESSION TAG SEQADV 4OGU GLN A -2 UNP P14324 EXPRESSION TAG SEQADV 4OGU GLY A -1 UNP P14324 EXPRESSION TAG SEQADV 4OGU HIS A 0 UNP P14324 EXPRESSION TAG SEQADV 4OGU THR A 53 UNP P14324 ALA 119 CONFLICT SEQADV 4OGU ALA A 239 UNP P14324 PHE 305 ENGINEERED MUTATION SEQRES 1 A 375 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 375 ARG GLU ASN LEU TYR PHE GLN GLY HIS MET ASN GLY ASP SEQRES 3 A 375 GLN ASN SER ASP VAL TYR ALA GLN GLU LYS GLN ASP PHE SEQRES 4 A 375 VAL GLN HIS PHE SER GLN ILE VAL ARG VAL LEU THR GLU SEQRES 5 A 375 ASP GLU MET GLY HIS PRO GLU ILE GLY ASP ALA ILE ALA SEQRES 6 A 375 ARG LEU LYS GLU VAL LEU GLU TYR ASN THR ILE GLY GLY SEQRES 7 A 375 LYS TYR ASN ARG GLY LEU THR VAL VAL VAL ALA PHE ARG SEQRES 8 A 375 GLU LEU VAL GLU PRO ARG LYS GLN ASP ALA ASP SER LEU SEQRES 9 A 375 GLN ARG ALA TRP THR VAL GLY TRP CYS VAL GLU LEU LEU SEQRES 10 A 375 GLN ALA PHE PHE LEU VAL ALA ASP ASP ILE MET ASP SER SEQRES 11 A 375 SER LEU THR ARG ARG GLY GLN ILE CYS TRP TYR GLN LYS SEQRES 12 A 375 PRO GLY VAL GLY LEU ASP ALA ILE ASN ASP ALA ASN LEU SEQRES 13 A 375 LEU GLU ALA CYS ILE TYR ARG LEU LEU LYS LEU TYR CYS SEQRES 14 A 375 ARG GLU GLN PRO TYR TYR LEU ASN LEU ILE GLU LEU PHE SEQRES 15 A 375 LEU GLN SER SER TYR GLN THR GLU ILE GLY GLN THR LEU SEQRES 16 A 375 ASP LEU LEU THR ALA PRO GLN GLY ASN VAL ASP LEU VAL SEQRES 17 A 375 ARG PHE THR GLU LYS ARG TYR LYS SER ILE VAL LYS TYR SEQRES 18 A 375 LYS THR ALA PHE TYR SER PHE TYR LEU PRO ILE ALA ALA SEQRES 19 A 375 ALA MET TYR MET ALA GLY ILE ASP GLY GLU LYS GLU HIS SEQRES 20 A 375 ALA ASN ALA LYS LYS ILE LEU LEU GLU MET GLY GLU PHE SEQRES 21 A 375 ALA GLN ILE GLN ASP ASP TYR LEU ASP LEU PHE GLY ASP SEQRES 22 A 375 PRO SER VAL THR GLY LYS ILE GLY THR ASP ILE GLN ASP SEQRES 23 A 375 ASN LYS CYS SER TRP LEU VAL VAL GLN CYS LEU GLN ARG SEQRES 24 A 375 ALA THR PRO GLU GLN TYR GLN ILE LEU LYS GLU ASN TYR SEQRES 25 A 375 GLY GLN LYS GLU ALA GLU LYS VAL ALA ARG VAL LYS ALA SEQRES 26 A 375 LEU TYR GLU GLU LEU ASP LEU PRO ALA VAL PHE LEU GLN SEQRES 27 A 375 TYR GLU GLU ASP SER TYR SER HIS ILE MET ALA LEU ILE SEQRES 28 A 375 GLU GLN TYR ALA ALA PRO LEU PRO PRO ALA VAL PHE LEU SEQRES 29 A 375 GLY LEU ALA ARG LYS ILE TYR LYS ARG ARG LYS HET MG A 401 1 HET MG A 402 1 HET MG A 403 1 HET IPE A 404 14 HET 210 A 405 13 HETNAM MG MAGNESIUM ION HETNAM IPE 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE HETNAM 210 PAMIDRONATE HETSYN IPE ISOPENTENYL PYROPHOSPHATE HETSYN 210 (3-AMINO-1-HYDROXY-1-PHOSPHONO-PROPYL)PHOSPHONIC ACID FORMUL 2 MG 3(MG 2+) FORMUL 5 IPE C5 H12 O7 P2 FORMUL 6 210 C3 H11 N O7 P2 FORMUL 7 HOH *109(H2 O) HELIX 1 1 GLN A 12 HIS A 20 1 9 HELIX 2 2 HIS A 20 THR A 29 1 10 HELIX 3 3 HIS A 35 GLU A 37 5 3 HELIX 4 4 ILE A 38 THR A 53 1 16 HELIX 5 5 TYR A 58 VAL A 72 1 15 HELIX 6 6 ASP A 78 ASP A 107 1 30 HELIX 7 7 TRP A 118 LYS A 121 5 4 HELIX 8 8 VAL A 124 LEU A 126 5 3 HELIX 9 9 ASP A 127 ARG A 148 1 22 HELIX 10 10 TYR A 152 ALA A 178 1 27 HELIX 11 11 THR A 189 THR A 201 1 13 HELIX 12 12 THR A 201 ALA A 217 1 17 HELIX 13 13 GLY A 221 GLY A 250 1 30 HELIX 14 14 ASP A 251 GLY A 256 1 6 HELIX 15 15 SER A 268 ALA A 278 1 11 HELIX 16 16 THR A 279 TYR A 290 1 12 HELIX 17 17 GLU A 294 LEU A 308 1 15 HELIX 18 18 ASP A 309 ALA A 333 1 25 HELIX 19 19 PRO A 337 TYR A 349 1 13 SHEET 1 A 2 THR A 111 ARG A 112 0 SHEET 2 A 2 GLN A 115 ILE A 116 -1 O GLN A 115 N ARG A 112 LINK OD2 ASP A 103 MG MG A 401 1555 1555 2.13 LINK OD1 ASP A 103 MG MG A 403 1555 1555 1.93 LINK OD2 ASP A 107 MG MG A 401 1555 1555 2.14 LINK OD2 ASP A 107 MG MG A 403 1555 1555 2.11 LINK OD2 ASP A 243 MG MG A 402 1555 1555 2.06 LINK MG MG A 401 O2 210 A 405 1555 1555 2.11 LINK MG MG A 401 O10 210 A 405 1555 1555 2.11 LINK MG MG A 401 O HOH A 504 1555 1555 2.94 LINK MG MG A 401 O HOH A 593 1555 1555 2.23 LINK MG MG A 401 O HOH A 594 1555 1555 1.90 LINK MG MG A 402 O9 210 A 405 1555 1555 2.00 LINK MG MG A 402 O5 210 A 405 1555 1555 2.10 LINK MG MG A 402 O HOH A 590 1555 1555 2.07 LINK MG MG A 402 O HOH A 591 1555 1555 2.28 LINK MG MG A 402 O HOH A 592 1555 1555 2.43 LINK MG MG A 403 O10 210 A 405 1555 1555 2.01 LINK MG MG A 403 O HOH A 586 1555 1555 2.08 LINK MG MG A 403 O HOH A 587 1555 1555 1.97 LINK MG MG A 403 O HOH A 588 1555 1555 2.18 CISPEP 1 ALA A 334 PRO A 335 0 3.49 SITE 1 AC1 7 ASP A 103 ASP A 107 MG A 403 210 A 405 SITE 2 AC1 7 HOH A 504 HOH A 593 HOH A 594 SITE 1 AC2 5 ASP A 243 210 A 405 HOH A 590 HOH A 591 SITE 2 AC2 5 HOH A 592 SITE 1 AC3 7 ASP A 103 ASP A 107 MG A 401 210 A 405 SITE 2 AC3 7 HOH A 586 HOH A 587 HOH A 588 SITE 1 AC4 15 GLY A 56 LYS A 57 ARG A 60 GLN A 96 SITE 2 AC4 15 ARG A 113 THR A 201 TYR A 204 GLN A 240 SITE 3 AC4 15 ASP A 243 210 A 405 HOH A 505 HOH A 507 SITE 4 AC4 15 HOH A 596 HOH A 597 HOH A 600 SITE 1 AC5 23 ASP A 103 ASP A 107 ARG A 112 LYS A 200 SITE 2 AC5 23 THR A 201 GLN A 240 ASP A 243 LYS A 257 SITE 3 AC5 23 MG A 401 MG A 402 MG A 403 IPE A 404 SITE 4 AC5 23 HOH A 504 HOH A 546 HOH A 586 HOH A 588 SITE 5 AC5 23 HOH A 589 HOH A 590 HOH A 591 HOH A 592 SITE 6 AC5 23 HOH A 593 HOH A 594 HOH A 601 CRYST1 111.210 111.210 67.270 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008992 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008992 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014865 0.00000