HEADER OXIDOREDUCTASE 18-JAN-14 4OHT TITLE CRYSTAL STRUCTURE OF SUCCINIC SEMIALDEHYDE DEHYDROGENASE FROM TITLE 2 STREPTOCOCCUS PYOGENES IN COMPLEX WITH NADP+ AS THE COFACTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUCCINATE-SEMIALDEHYDE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PYOGENES MGAS1882; SOURCE 3 ORGANISM_TAXID: 1010840; SOURCE 4 STRAIN: STREPTOCOCCUS PYOGENES; SOURCE 5 GENE: GABD, MGAS1882_0809; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-28A KEYWDS SSADH, GABD, OXIDOREDUCTASE, ROSSMANN FOLD, DEHYDROGENASE, NADP KEYWDS 2 BINDING EXPDTA X-RAY DIFFRACTION AUTHOR S.A.PARK,E.H.JANG,Y.M.CHI,K.S.LEE REVDAT 2 20-SEP-23 4OHT 1 REMARK REVDAT 1 10-DEC-14 4OHT 0 JRNL AUTH E.H.JANG,S.A.PARK,Y.M.CHI,K.S.LEE JRNL TITL KINETIC AND STRUCTURAL CHARACTERIZATION FOR COFACTOR JRNL TITL 2 PREFERENCE OF SUCCINIC SEMIALDEHYDE DEHYDROGENASE FROM JRNL TITL 3 STREPTOCOCCUS PYOGENES. JRNL REF MOL.CELLS V. 37 719 2014 JRNL REFN ISSN 1016-8478 JRNL PMID 25256219 JRNL DOI 10.14348/MOLCELLS.2014.0162 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.3 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 104916.170 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 92937 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4665 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.23 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 14417 REMARK 3 BIN R VALUE (WORKING SET) : 0.3090 REMARK 3 BIN FREE R VALUE : 0.3310 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 754 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.012 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7148 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 614 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.74000 REMARK 3 B22 (A**2) : 0.74000 REMARK 3 B33 (A**2) : -1.49000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM SIGMAA (A) : 0.29 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.31 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.820 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.160 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.730 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.250 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.330 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.38 REMARK 3 BSOL : 60.98 REMARK 3 REMARK 3 NCS MODEL : NONE REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 6 : NAP.PAR REMARK 3 PARAMETER FILE 7 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 6 : NAP.TOP REMARK 3 TOPOLOGY FILE 7 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 4OHT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000084510. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97951 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 93776 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 8.900 REMARK 200 R MERGE (I) : 0.12600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.44100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4OGD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE TRIHYDRATE AND REMARK 280 2.0 M AMMONIUM SULFATE, PH 4.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 86.76350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 67.37950 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 67.37950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 130.14525 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 67.37950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 67.37950 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 43.38175 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 67.37950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 67.37950 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 130.14525 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 67.37950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 67.37950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 43.38175 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 86.76350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 457 REMARK 465 THR A 458 REMARK 465 ASN A 459 REMARK 465 ASN A 460 REMARK 465 SER A 461 REMARK 465 ASN A 462 REMARK 465 THR A 463 REMARK 465 LYS A 464 REMARK 465 VAL A 465 REMARK 465 MET B 1 REMARK 465 LYS B 457 REMARK 465 THR B 458 REMARK 465 ASN B 459 REMARK 465 ASN B 460 REMARK 465 SER B 461 REMARK 465 ASN B 462 REMARK 465 THR B 463 REMARK 465 LYS B 464 REMARK 465 VAL B 465 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 43 OD2 ASP A 43 8554 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 437 CD GLU A 437 OE1 -0.141 REMARK 500 GLU A 437 CD GLU A 437 OE2 -0.116 REMARK 500 GLU A 437 C GLU A 437 O -0.176 REMARK 500 LEU A 438 C LEU A 438 O -0.217 REMARK 500 SER A 439 CB SER A 439 OG -0.098 REMARK 500 SER A 439 C SER A 439 O -0.150 REMARK 500 GLU B 437 CD GLU B 437 OE1 -0.106 REMARK 500 GLU B 437 CD GLU B 437 OE2 -0.145 REMARK 500 GLU B 437 C GLU B 437 O -0.162 REMARK 500 LEU B 438 C LEU B 438 O -0.199 REMARK 500 SER B 439 CB SER B 439 OG -0.151 REMARK 500 SER B 439 C SER B 439 O -0.139 REMARK 500 GLU B 440 CD GLU B 440 OE1 -0.077 REMARK 500 GLU B 440 CD GLU B 440 OE2 -0.127 REMARK 500 GLU B 440 C GLU B 440 O -0.160 REMARK 500 LEU B 441 C LEU B 441 O -0.170 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 230 -163.56 -107.34 REMARK 500 ASP A 233 58.31 -144.49 REMARK 500 HIS A 337 146.42 -172.07 REMARK 500 LEU A 388 -75.74 -93.61 REMARK 500 LYS A 430 -138.15 50.38 REMARK 500 LEU A 438 170.14 65.77 REMARK 500 SER A 439 -161.58 53.35 REMARK 500 ASP B 233 54.64 -143.70 REMARK 500 ASP B 241 33.97 -98.93 REMARK 500 HIS B 337 140.39 -178.69 REMARK 500 LEU B 388 -69.54 -95.13 REMARK 500 LYS B 430 -138.62 52.81 REMARK 500 LEU B 438 170.99 62.27 REMARK 500 SER B 439 -161.69 59.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAP A 501 REMARK 610 NAP B 501 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4OGD RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH NADP+. DBREF 4OHT A 1 465 UNP H8HE26 H8HE26_STRPY 1 465 DBREF 4OHT B 1 465 UNP H8HE26 H8HE26_STRPY 1 465 SEQRES 1 A 465 MET ALA TYR GLN THR ILE TYR PRO TYR THR ASN GLU VAL SEQRES 2 A 465 LEU HIS THR PHE ASP ASN MET THR ASP GLN GLY LEU ALA SEQRES 3 A 465 ASP VAL LEU GLU ARG ALA HIS LEU LEU TYR LYS LYS TRP SEQRES 4 A 465 ARG LYS GLU ASP HIS LEU GLU GLU ARG LYS ALA GLN LEU SEQRES 5 A 465 HIS GLN VAL ALA ASN ILE LEU ARG ARG ASP ARG ASP LYS SEQRES 6 A 465 TYR ALA GLU ILE MET THR LYS ASP MET GLY LYS LEU PHE SEQRES 7 A 465 THR GLU ALA GLN GLY GLU VAL ASP LEU CYS ALA ASP ILE SEQRES 8 A 465 ALA ASP TYR TYR ALA ASP LYS ALA ASP GLU PHE LEU MET SEQRES 9 A 465 SER THR PRO LEU GLU THR ASP SER GLY GLN ALA TYR TYR SEQRES 10 A 465 LEU LYS GLN SER THR GLY VAL ILE LEU ALA VAL GLU PRO SEQRES 11 A 465 TRP ASN PHE PRO TYR TYR GLN ILE MET ARG VAL PHE ALA SEQRES 12 A 465 PRO ASN PHE ILE VAL GLY ASN PRO MET VAL LEU LYS HIS SEQRES 13 A 465 ALA SER ILE CYS PRO ARG SER ALA GLN SER PHE GLU GLU SEQRES 14 A 465 LEU VAL LEU GLU ALA GLY ALA GLU ALA GLY SER ILE THR SEQRES 15 A 465 ASN LEU PHE ILE SER TYR ASP GLN VAL SER GLN VAL ILE SEQRES 16 A 465 ALA ASP LYS ARG VAL VAL GLY VAL CYS LEU THR GLY SER SEQRES 17 A 465 GLU ARG GLY GLY ALA SER ILE ALA GLU GLU ALA GLY LYS SEQRES 18 A 465 ASN LEU LYS LYS THR THR LEU GLU LEU GLY GLY ASP ASP SEQRES 19 A 465 ALA PHE ILE ILE LEU ASP ASP ALA ASP TRP ASP GLN LEU SEQRES 20 A 465 GLU LYS VAL LEU TYR PHE SER ARG LEU TYR ASN ALA GLY SEQRES 21 A 465 GLN VAL CYS THR SER SER LYS ARG PHE ILE VAL LEU ASP SEQRES 22 A 465 LYS ASP TYR ASP ARG PHE LYS GLU LEU LEU THR LYS VAL SEQRES 23 A 465 PHE LYS THR ALA LYS TRP GLY ASP PRO MET ASP PRO GLU SEQRES 24 A 465 THR THR LEU ALA PRO LEU SER SER ALA GLN ALA LYS ALA SEQRES 25 A 465 ASP VAL LEU ASP GLN ILE LYS LEU ALA LEU ASP HIS GLY SEQRES 26 A 465 ALA GLU LEU VAL TYR GLY GLY GLU ALA ILE ASP HIS PRO SEQRES 27 A 465 GLY HIS PHE VAL MET PRO THR ILE ILE ALA GLY LEU THR SEQRES 28 A 465 LYS ASP ASN PRO ILE TYR TYR GLN GLU ILE PHE GLY PRO SEQRES 29 A 465 VAL GLY GLU ILE TYR LYS VAL SER SER GLU GLU GLU ALA SEQRES 30 A 465 ILE GLU VAL ALA ASN ASP SER ASN TYR GLY LEU GLY GLY SEQRES 31 A 465 THR ILE PHE SER SER ASN GLN GLU HIS ALA LYS ALA VAL SEQRES 32 A 465 ALA ALA LYS ILE GLU THR GLY MET SER PHE ILE ASN SER SEQRES 33 A 465 GLY TRP THR SER LEU PRO GLU LEU PRO PHE GLY GLY ILE SEQRES 34 A 465 LYS HIS SER GLY TYR GLY ARG GLU LEU SER GLU LEU GLY SEQRES 35 A 465 PHE THR SER PHE VAL ASN GLU HIS LEU ILE TYR ILE PRO SEQRES 36 A 465 ASN LYS THR ASN ASN SER ASN THR LYS VAL SEQRES 1 B 465 MET ALA TYR GLN THR ILE TYR PRO TYR THR ASN GLU VAL SEQRES 2 B 465 LEU HIS THR PHE ASP ASN MET THR ASP GLN GLY LEU ALA SEQRES 3 B 465 ASP VAL LEU GLU ARG ALA HIS LEU LEU TYR LYS LYS TRP SEQRES 4 B 465 ARG LYS GLU ASP HIS LEU GLU GLU ARG LYS ALA GLN LEU SEQRES 5 B 465 HIS GLN VAL ALA ASN ILE LEU ARG ARG ASP ARG ASP LYS SEQRES 6 B 465 TYR ALA GLU ILE MET THR LYS ASP MET GLY LYS LEU PHE SEQRES 7 B 465 THR GLU ALA GLN GLY GLU VAL ASP LEU CYS ALA ASP ILE SEQRES 8 B 465 ALA ASP TYR TYR ALA ASP LYS ALA ASP GLU PHE LEU MET SEQRES 9 B 465 SER THR PRO LEU GLU THR ASP SER GLY GLN ALA TYR TYR SEQRES 10 B 465 LEU LYS GLN SER THR GLY VAL ILE LEU ALA VAL GLU PRO SEQRES 11 B 465 TRP ASN PHE PRO TYR TYR GLN ILE MET ARG VAL PHE ALA SEQRES 12 B 465 PRO ASN PHE ILE VAL GLY ASN PRO MET VAL LEU LYS HIS SEQRES 13 B 465 ALA SER ILE CYS PRO ARG SER ALA GLN SER PHE GLU GLU SEQRES 14 B 465 LEU VAL LEU GLU ALA GLY ALA GLU ALA GLY SER ILE THR SEQRES 15 B 465 ASN LEU PHE ILE SER TYR ASP GLN VAL SER GLN VAL ILE SEQRES 16 B 465 ALA ASP LYS ARG VAL VAL GLY VAL CYS LEU THR GLY SER SEQRES 17 B 465 GLU ARG GLY GLY ALA SER ILE ALA GLU GLU ALA GLY LYS SEQRES 18 B 465 ASN LEU LYS LYS THR THR LEU GLU LEU GLY GLY ASP ASP SEQRES 19 B 465 ALA PHE ILE ILE LEU ASP ASP ALA ASP TRP ASP GLN LEU SEQRES 20 B 465 GLU LYS VAL LEU TYR PHE SER ARG LEU TYR ASN ALA GLY SEQRES 21 B 465 GLN VAL CYS THR SER SER LYS ARG PHE ILE VAL LEU ASP SEQRES 22 B 465 LYS ASP TYR ASP ARG PHE LYS GLU LEU LEU THR LYS VAL SEQRES 23 B 465 PHE LYS THR ALA LYS TRP GLY ASP PRO MET ASP PRO GLU SEQRES 24 B 465 THR THR LEU ALA PRO LEU SER SER ALA GLN ALA LYS ALA SEQRES 25 B 465 ASP VAL LEU ASP GLN ILE LYS LEU ALA LEU ASP HIS GLY SEQRES 26 B 465 ALA GLU LEU VAL TYR GLY GLY GLU ALA ILE ASP HIS PRO SEQRES 27 B 465 GLY HIS PHE VAL MET PRO THR ILE ILE ALA GLY LEU THR SEQRES 28 B 465 LYS ASP ASN PRO ILE TYR TYR GLN GLU ILE PHE GLY PRO SEQRES 29 B 465 VAL GLY GLU ILE TYR LYS VAL SER SER GLU GLU GLU ALA SEQRES 30 B 465 ILE GLU VAL ALA ASN ASP SER ASN TYR GLY LEU GLY GLY SEQRES 31 B 465 THR ILE PHE SER SER ASN GLN GLU HIS ALA LYS ALA VAL SEQRES 32 B 465 ALA ALA LYS ILE GLU THR GLY MET SER PHE ILE ASN SER SEQRES 33 B 465 GLY TRP THR SER LEU PRO GLU LEU PRO PHE GLY GLY ILE SEQRES 34 B 465 LYS HIS SER GLY TYR GLY ARG GLU LEU SER GLU LEU GLY SEQRES 35 B 465 PHE THR SER PHE VAL ASN GLU HIS LEU ILE TYR ILE PRO SEQRES 36 B 465 ASN LYS THR ASN ASN SER ASN THR LYS VAL HET NAP A 501 31 HET NAP B 501 31 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 5 HOH *614(H2 O) HELIX 1 1 THR A 21 GLU A 42 1 22 HELIX 2 2 HIS A 44 ASP A 62 1 19 HELIX 3 3 ASP A 62 GLY A 75 1 14 HELIX 4 4 LEU A 77 MET A 104 1 28 HELIX 5 5 TYR A 135 GLY A 149 1 15 HELIX 6 6 CYS A 160 ALA A 174 1 15 HELIX 7 7 SER A 187 ALA A 196 1 10 HELIX 8 8 SER A 208 ASN A 222 1 15 HELIX 9 9 ASP A 243 TYR A 257 1 15 HELIX 10 10 ASN A 258 GLN A 261 5 4 HELIX 11 11 ASP A 275 LYS A 288 1 14 HELIX 12 12 SER A 307 HIS A 324 1 18 HELIX 13 13 ASN A 354 GLN A 359 5 6 HELIX 14 14 SER A 373 ASP A 383 1 11 HELIX 15 15 ASN A 396 LYS A 406 1 11 HELIX 16 16 LEU A 438 THR A 444 1 7 HELIX 17 17 THR B 21 GLU B 42 1 22 HELIX 18 18 HIS B 44 ASP B 62 1 19 HELIX 19 19 ASP B 62 GLY B 75 1 14 HELIX 20 20 LEU B 77 MET B 104 1 28 HELIX 21 21 PHE B 133 GLY B 149 1 17 HELIX 22 22 CYS B 160 ALA B 174 1 15 HELIX 23 23 SER B 187 ASP B 197 1 11 HELIX 24 24 SER B 208 ASN B 222 1 15 HELIX 25 25 ASP B 243 TYR B 257 1 15 HELIX 26 26 ASN B 258 GLN B 261 5 4 HELIX 27 27 ASP B 273 LYS B 288 1 16 HELIX 28 28 SER B 307 HIS B 324 1 18 HELIX 29 29 ASN B 354 GLN B 359 5 6 HELIX 30 30 SER B 373 ASP B 383 1 11 HELIX 31 31 ASN B 396 LYS B 406 1 11 HELIX 32 32 LEU B 438 THR B 444 1 7 SHEET 1 A 2 TYR A 3 ILE A 6 0 SHEET 2 A 2 VAL A 13 PHE A 17 -1 O LEU A 14 N THR A 5 SHEET 1 B10 THR A 106 PRO A 107 0 SHEET 2 B10 GLY A 113 GLN A 120 -1 O TYR A 117 N THR A 106 SHEET 3 B10 ASN A 448 PRO A 455 -1 O ASN A 448 N GLN A 120 SHEET 4 B10 MET B 411 ILE B 414 1 O ILE B 414 N TYR A 453 SHEET 5 B10 THR B 391 PHE B 393 1 N ILE B 392 O PHE B 413 SHEET 6 B10 ALA B 235 ILE B 238 1 N ALA B 235 O THR B 391 SHEET 7 B10 ARG B 268 LEU B 272 1 O ARG B 268 N PHE B 236 SHEET 8 B10 VAL B 365 VAL B 371 1 O TYR B 369 N PHE B 269 SHEET 9 B10 THR B 345 ALA B 348 1 N THR B 345 O GLY B 366 SHEET 10 B10 GLU B 327 TYR B 330 -1 N GLU B 327 O ALA B 348 SHEET 1 C 6 ILE A 181 ASN A 183 0 SHEET 2 C 6 MET A 152 LYS A 155 1 N LEU A 154 O THR A 182 SHEET 3 C 6 VAL A 124 VAL A 128 1 N ALA A 127 O VAL A 153 SHEET 4 C 6 VAL A 200 THR A 206 1 O GLY A 202 N LEU A 126 SHEET 5 C 6 LYS A 225 GLU A 229 1 O GLU A 229 N LEU A 205 SHEET 6 C 6 GLY A 433 TYR A 434 -1 O TYR A 434 N LEU A 228 SHEET 1 D10 GLU A 327 TYR A 330 0 SHEET 2 D10 THR A 345 ALA A 348 -1 O ALA A 348 N GLU A 327 SHEET 3 D10 VAL A 365 VAL A 371 1 O GLY A 366 N THR A 345 SHEET 4 D10 ARG A 268 LEU A 272 1 N PHE A 269 O TYR A 369 SHEET 5 D10 ALA A 235 ILE A 238 1 N PHE A 236 O ARG A 268 SHEET 6 D10 THR A 391 PHE A 393 1 O PHE A 393 N ILE A 237 SHEET 7 D10 MET A 411 ILE A 414 1 O PHE A 413 N ILE A 392 SHEET 8 D10 ASN B 448 PRO B 455 1 O TYR B 453 N SER A 412 SHEET 9 D10 GLY B 113 GLN B 120 -1 N GLN B 120 O ASN B 448 SHEET 10 D10 THR B 106 PRO B 107 -1 N THR B 106 O TYR B 117 SHEET 1 E 2 TYR A 386 GLY A 387 0 SHEET 2 E 2 ILE A 429 LYS A 430 -1 O ILE A 429 N GLY A 387 SHEET 1 F 2 TYR B 3 ILE B 6 0 SHEET 2 F 2 VAL B 13 PHE B 17 -1 O LEU B 14 N THR B 5 SHEET 1 G 6 ILE B 181 ASN B 183 0 SHEET 2 G 6 MET B 152 LYS B 155 1 N LEU B 154 O THR B 182 SHEET 3 G 6 VAL B 124 VAL B 128 1 N ALA B 127 O VAL B 153 SHEET 4 G 6 VAL B 200 THR B 206 1 O GLY B 202 N LEU B 126 SHEET 5 G 6 LYS B 225 GLU B 229 1 O GLU B 229 N LEU B 205 SHEET 6 G 6 GLY B 433 TYR B 434 -1 O TYR B 434 N LEU B 228 SHEET 1 H 2 TYR B 386 GLY B 387 0 SHEET 2 H 2 ILE B 429 LYS B 430 -1 O ILE B 429 N GLY B 387 SITE 1 AC1 20 VAL A 128 GLU A 129 PRO A 130 TRP A 131 SITE 2 AC1 20 LYS A 155 HIS A 156 ALA A 157 SER A 158 SITE 3 AC1 20 TYR A 188 SER A 208 GLY A 211 SER A 214 SITE 4 AC1 20 ILE A 215 HOH A 631 HOH A 668 HOH A 738 SITE 5 AC1 20 HOH A 745 HOH A 763 HOH A 825 HOH A 895 SITE 1 AC2 21 VAL B 128 GLU B 129 PRO B 130 TRP B 131 SITE 2 AC2 21 LYS B 155 HIS B 156 ALA B 157 SER B 158 SITE 3 AC2 21 TYR B 188 THR B 206 SER B 208 GLY B 211 SITE 4 AC2 21 SER B 214 ILE B 215 HOH B 662 HOH B 671 SITE 5 AC2 21 HOH B 715 HOH B 717 HOH B 792 HOH B 837 SITE 6 AC2 21 HOH B 849 CRYST1 134.759 134.759 173.527 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007421 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007421 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005763 0.00000