HEADER VIRAL PROTEIN 19-JAN-14 4OIG TITLE DENGUE VIRUS NON-STRUCTURAL PROTEIN NS1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-STRUCTURAL PROTEIN 1, NS1; COMPND 3 CHAIN: A, B, D, E; COMPND 4 FRAGMENT: UNP RESIDUES 947-1127; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DENGUE VIRUS 1; SOURCE 3 ORGANISM_COMMON: DENV-1; SOURCE 4 ORGANISM_TAXID: 11059; SOURCE 5 STRAIN: NAURU/WEST PAC/1974; SOURCE 6 GENE: NS1; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET21(A)+ KEYWDS DENGUE VIRUS, NON-STRUCTURAL PROTEIN, NS1, FLAVIVIRUS VIRAL PROTEIN, KEYWDS 2 STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 3 DISEASES, CSGID, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.A.EDELING,D.H.FREMONT,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS AUTHOR 2 DISEASES (CSGID) REVDAT 4 22-NOV-17 4OIG 1 REMARK REVDAT 3 23-APR-14 4OIG 1 JRNL REVDAT 2 02-APR-14 4OIG 1 JRNL REVDAT 1 05-MAR-14 4OIG 0 JRNL AUTH M.A.EDELING,M.S.DIAMOND,D.H.FREMONT JRNL TITL STRUCTURAL BASIS OF FLAVIVIRUS NS1 ASSEMBLY AND ANTIBODY JRNL TITL 2 RECOGNITION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 111 4285 2014 JRNL REFN ISSN 0027-8424 JRNL PMID 24594604 JRNL DOI 10.1073/PNAS.1322036111 REMARK 2 REMARK 2 RESOLUTION. 2.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.2_869 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 23632 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1182 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9080 - 5.3442 1.00 2889 152 0.2191 0.2667 REMARK 3 2 5.3442 - 4.2554 1.00 2814 149 0.1656 0.1881 REMARK 3 3 4.2554 - 3.7215 1.00 2840 149 0.1900 0.2475 REMARK 3 4 3.7215 - 3.3831 1.00 2788 147 0.2139 0.2452 REMARK 3 5 3.3831 - 3.1416 1.00 2825 149 0.2374 0.2775 REMARK 3 6 3.1416 - 2.9570 1.00 2783 146 0.2586 0.3209 REMARK 3 7 2.9570 - 2.8093 1.00 2827 149 0.2806 0.3639 REMARK 3 8 2.8093 - 2.6900 0.96 2684 141 0.3548 0.4393 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.73 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 27.42 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.900 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.700 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.38140 REMARK 3 B22 (A**2) : 1.90480 REMARK 3 B33 (A**2) : 0.47660 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.38770 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 5780 REMARK 3 ANGLE : 1.166 7820 REMARK 3 CHIRALITY : 0.049 828 REMARK 3 PLANARITY : 0.004 972 REMARK 3 DIHEDRAL : 10.637 2088 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4OIG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000084533. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NOIR-1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23633 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.690 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12MG/ML IN 20% PEG 4K, 0.2 M MAGNESIUM REMARK 280 SULFATE, 10% GLYCEROL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 54.58750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.98100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 54.58750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.98100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -109.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -109.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 168 REMARK 465 ALA A 169 REMARK 465 SER A 170 REMARK 465 MSE A 171 REMARK 465 ARG A 172 REMARK 465 ASP A 173 REMARK 465 SER A 174 REMARK 465 TYR A 175 REMARK 465 THR A 176 REMARK 465 GLN A 177 REMARK 465 MSE B 168 REMARK 465 ALA B 169 REMARK 465 SER B 170 REMARK 465 MSE B 171 REMARK 465 ARG B 172 REMARK 465 ASP B 173 REMARK 465 SER B 174 REMARK 465 TYR B 175 REMARK 465 THR B 176 REMARK 465 GLN B 177 REMARK 465 MSE D 168 REMARK 465 ALA D 169 REMARK 465 SER D 170 REMARK 465 MSE D 171 REMARK 465 ARG D 172 REMARK 465 ASP D 173 REMARK 465 SER D 174 REMARK 465 TYR D 175 REMARK 465 THR D 176 REMARK 465 GLN D 177 REMARK 465 MSE E 168 REMARK 465 ALA E 169 REMARK 465 SER E 170 REMARK 465 MSE E 171 REMARK 465 ARG E 172 REMARK 465 ASP E 173 REMARK 465 SER E 174 REMARK 465 TYR E 175 REMARK 465 THR E 176 REMARK 465 GLN E 177 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA E 265 OG SER E 348 2.05 REMARK 500 OG SER E 216 O HOH E 543 2.19 REMARK 500 NE1 TRP E 210 O3 SO4 E 401 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER D 351 OE1 GLU E 343 3555 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 190 -123.74 55.59 REMARK 500 ASP A 197 -154.36 -150.14 REMARK 500 GLU A 208 -57.95 70.14 REMARK 500 ASP B 190 -123.89 55.83 REMARK 500 GLU B 208 -57.38 69.80 REMARK 500 LEU B 345 141.46 -171.45 REMARK 500 ASP D 190 -124.10 55.57 REMARK 500 ASP D 197 -153.18 -150.50 REMARK 500 GLU D 208 -57.94 69.71 REMARK 500 ASP E 190 -123.95 56.14 REMARK 500 ASP E 197 -151.68 -150.49 REMARK 500 GLU E 208 -57.04 69.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4OIE RELATED DB: PDB REMARK 900 RELATED ID: 4OII RELATED DB: PDB REMARK 900 RELATED ID: CSGID-IDP00269 RELATED DB: TARGETTRACK DBREF 4OIG A 172 352 UNP P17763 POLG_DEN1W 947 1127 DBREF 4OIG B 172 352 UNP P17763 POLG_DEN1W 947 1127 DBREF 4OIG D 172 352 UNP P17763 POLG_DEN1W 947 1127 DBREF 4OIG E 172 352 UNP P17763 POLG_DEN1W 947 1127 SEQADV 4OIG MSE A 168 UNP P17763 EXPRESSION TAG SEQADV 4OIG ALA A 169 UNP P17763 EXPRESSION TAG SEQADV 4OIG SER A 170 UNP P17763 EXPRESSION TAG SEQADV 4OIG MSE A 171 UNP P17763 EXPRESSION TAG SEQADV 4OIG MSE B 168 UNP P17763 EXPRESSION TAG SEQADV 4OIG ALA B 169 UNP P17763 EXPRESSION TAG SEQADV 4OIG SER B 170 UNP P17763 EXPRESSION TAG SEQADV 4OIG MSE B 171 UNP P17763 EXPRESSION TAG SEQADV 4OIG MSE D 168 UNP P17763 EXPRESSION TAG SEQADV 4OIG ALA D 169 UNP P17763 EXPRESSION TAG SEQADV 4OIG SER D 170 UNP P17763 EXPRESSION TAG SEQADV 4OIG MSE D 171 UNP P17763 EXPRESSION TAG SEQADV 4OIG MSE E 168 UNP P17763 EXPRESSION TAG SEQADV 4OIG ALA E 169 UNP P17763 EXPRESSION TAG SEQADV 4OIG SER E 170 UNP P17763 EXPRESSION TAG SEQADV 4OIG MSE E 171 UNP P17763 EXPRESSION TAG SEQRES 1 A 185 MSE ALA SER MSE ARG ASP SER TYR THR GLN VAL CYS ASP SEQRES 2 A 185 HIS ARG LEU MSE SER ALA ALA ILE LYS ASP SER LYS ALA SEQRES 3 A 185 VAL HIS ALA ASP MSE GLY TYR TRP ILE GLU SER GLU LYS SEQRES 4 A 185 ASN GLU THR TRP LYS LEU ALA ARG ALA SER PHE ILE GLU SEQRES 5 A 185 VAL LYS THR CYS ILE TRP PRO LYS SER HIS THR LEU TRP SEQRES 6 A 185 SER ASN GLY VAL LEU GLU SER GLU MSE ILE ILE PRO LYS SEQRES 7 A 185 ILE TYR GLY GLY PRO ILE SER GLN HIS ASN TYR ARG PRO SEQRES 8 A 185 GLY TYR PHE THR GLN THR ALA GLY PRO TRP HIS LEU GLY SEQRES 9 A 185 LYS LEU GLU LEU ASP PHE ASP LEU CYS GLU GLY THR THR SEQRES 10 A 185 VAL VAL VAL ASP GLU HIS CYS GLY ASN ARG GLY PRO SER SEQRES 11 A 185 LEU ARG THR THR THR VAL THR GLY LYS THR ILE HIS GLU SEQRES 12 A 185 TRP CYS CYS ARG SER CYS THR LEU PRO PRO LEU ARG PHE SEQRES 13 A 185 LYS GLY GLU ASP GLY CYS TRP TYR GLY MSE GLU ILE ARG SEQRES 14 A 185 PRO VAL LYS GLU LYS GLU GLU ASN LEU VAL LYS SER MSE SEQRES 15 A 185 VAL SER ALA SEQRES 1 B 185 MSE ALA SER MSE ARG ASP SER TYR THR GLN VAL CYS ASP SEQRES 2 B 185 HIS ARG LEU MSE SER ALA ALA ILE LYS ASP SER LYS ALA SEQRES 3 B 185 VAL HIS ALA ASP MSE GLY TYR TRP ILE GLU SER GLU LYS SEQRES 4 B 185 ASN GLU THR TRP LYS LEU ALA ARG ALA SER PHE ILE GLU SEQRES 5 B 185 VAL LYS THR CYS ILE TRP PRO LYS SER HIS THR LEU TRP SEQRES 6 B 185 SER ASN GLY VAL LEU GLU SER GLU MSE ILE ILE PRO LYS SEQRES 7 B 185 ILE TYR GLY GLY PRO ILE SER GLN HIS ASN TYR ARG PRO SEQRES 8 B 185 GLY TYR PHE THR GLN THR ALA GLY PRO TRP HIS LEU GLY SEQRES 9 B 185 LYS LEU GLU LEU ASP PHE ASP LEU CYS GLU GLY THR THR SEQRES 10 B 185 VAL VAL VAL ASP GLU HIS CYS GLY ASN ARG GLY PRO SER SEQRES 11 B 185 LEU ARG THR THR THR VAL THR GLY LYS THR ILE HIS GLU SEQRES 12 B 185 TRP CYS CYS ARG SER CYS THR LEU PRO PRO LEU ARG PHE SEQRES 13 B 185 LYS GLY GLU ASP GLY CYS TRP TYR GLY MSE GLU ILE ARG SEQRES 14 B 185 PRO VAL LYS GLU LYS GLU GLU ASN LEU VAL LYS SER MSE SEQRES 15 B 185 VAL SER ALA SEQRES 1 D 185 MSE ALA SER MSE ARG ASP SER TYR THR GLN VAL CYS ASP SEQRES 2 D 185 HIS ARG LEU MSE SER ALA ALA ILE LYS ASP SER LYS ALA SEQRES 3 D 185 VAL HIS ALA ASP MSE GLY TYR TRP ILE GLU SER GLU LYS SEQRES 4 D 185 ASN GLU THR TRP LYS LEU ALA ARG ALA SER PHE ILE GLU SEQRES 5 D 185 VAL LYS THR CYS ILE TRP PRO LYS SER HIS THR LEU TRP SEQRES 6 D 185 SER ASN GLY VAL LEU GLU SER GLU MSE ILE ILE PRO LYS SEQRES 7 D 185 ILE TYR GLY GLY PRO ILE SER GLN HIS ASN TYR ARG PRO SEQRES 8 D 185 GLY TYR PHE THR GLN THR ALA GLY PRO TRP HIS LEU GLY SEQRES 9 D 185 LYS LEU GLU LEU ASP PHE ASP LEU CYS GLU GLY THR THR SEQRES 10 D 185 VAL VAL VAL ASP GLU HIS CYS GLY ASN ARG GLY PRO SER SEQRES 11 D 185 LEU ARG THR THR THR VAL THR GLY LYS THR ILE HIS GLU SEQRES 12 D 185 TRP CYS CYS ARG SER CYS THR LEU PRO PRO LEU ARG PHE SEQRES 13 D 185 LYS GLY GLU ASP GLY CYS TRP TYR GLY MSE GLU ILE ARG SEQRES 14 D 185 PRO VAL LYS GLU LYS GLU GLU ASN LEU VAL LYS SER MSE SEQRES 15 D 185 VAL SER ALA SEQRES 1 E 185 MSE ALA SER MSE ARG ASP SER TYR THR GLN VAL CYS ASP SEQRES 2 E 185 HIS ARG LEU MSE SER ALA ALA ILE LYS ASP SER LYS ALA SEQRES 3 E 185 VAL HIS ALA ASP MSE GLY TYR TRP ILE GLU SER GLU LYS SEQRES 4 E 185 ASN GLU THR TRP LYS LEU ALA ARG ALA SER PHE ILE GLU SEQRES 5 E 185 VAL LYS THR CYS ILE TRP PRO LYS SER HIS THR LEU TRP SEQRES 6 E 185 SER ASN GLY VAL LEU GLU SER GLU MSE ILE ILE PRO LYS SEQRES 7 E 185 ILE TYR GLY GLY PRO ILE SER GLN HIS ASN TYR ARG PRO SEQRES 8 E 185 GLY TYR PHE THR GLN THR ALA GLY PRO TRP HIS LEU GLY SEQRES 9 E 185 LYS LEU GLU LEU ASP PHE ASP LEU CYS GLU GLY THR THR SEQRES 10 E 185 VAL VAL VAL ASP GLU HIS CYS GLY ASN ARG GLY PRO SER SEQRES 11 E 185 LEU ARG THR THR THR VAL THR GLY LYS THR ILE HIS GLU SEQRES 12 E 185 TRP CYS CYS ARG SER CYS THR LEU PRO PRO LEU ARG PHE SEQRES 13 E 185 LYS GLY GLU ASP GLY CYS TRP TYR GLY MSE GLU ILE ARG SEQRES 14 E 185 PRO VAL LYS GLU LYS GLU GLU ASN LEU VAL LYS SER MSE SEQRES 15 E 185 VAL SER ALA MODRES 4OIG MSE A 184 MET SELENOMETHIONINE MODRES 4OIG MSE A 198 MET SELENOMETHIONINE MODRES 4OIG MSE A 241 MET SELENOMETHIONINE MODRES 4OIG MSE A 333 MET SELENOMETHIONINE MODRES 4OIG MSE A 349 MET SELENOMETHIONINE MODRES 4OIG MSE B 184 MET SELENOMETHIONINE MODRES 4OIG MSE B 198 MET SELENOMETHIONINE MODRES 4OIG MSE B 241 MET SELENOMETHIONINE MODRES 4OIG MSE B 333 MET SELENOMETHIONINE MODRES 4OIG MSE B 349 MET SELENOMETHIONINE MODRES 4OIG MSE D 184 MET SELENOMETHIONINE MODRES 4OIG MSE D 198 MET SELENOMETHIONINE MODRES 4OIG MSE D 241 MET SELENOMETHIONINE MODRES 4OIG MSE D 333 MET SELENOMETHIONINE MODRES 4OIG MSE D 349 MET SELENOMETHIONINE MODRES 4OIG MSE E 184 MET SELENOMETHIONINE MODRES 4OIG MSE E 198 MET SELENOMETHIONINE MODRES 4OIG MSE E 241 MET SELENOMETHIONINE MODRES 4OIG MSE E 333 MET SELENOMETHIONINE MODRES 4OIG MSE E 349 MET SELENOMETHIONINE HET MSE A 184 8 HET MSE A 198 8 HET MSE A 241 8 HET MSE A 333 8 HET MSE A 349 8 HET MSE B 184 8 HET MSE B 198 8 HET MSE B 241 8 HET MSE B 333 8 HET MSE B 349 8 HET MSE D 184 8 HET MSE D 198 8 HET MSE D 241 8 HET MSE D 333 8 HET MSE D 349 8 HET MSE E 184 8 HET MSE E 198 8 HET MSE E 241 8 HET MSE E 333 8 HET MSE E 349 8 HET SO4 A 401 5 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET SO4 A 406 5 HET SO4 B 401 5 HET SO4 B 402 5 HET SO4 D 401 5 HET SO4 D 402 5 HET SO4 D 403 5 HET SO4 D 404 5 HET SO4 E 401 5 HET SO4 E 402 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION FORMUL 1 MSE 20(C5 H11 N O2 SE) FORMUL 5 SO4 14(O4 S 2-) FORMUL 19 HOH *145(H2 O) HELIX 1 1 PRO A 226 THR A 230 5 5 HELIX 2 2 LEU A 237 MSE A 241 5 5 HELIX 3 3 PRO A 244 GLY A 248 5 5 HELIX 4 4 SER A 252 TYR A 256 5 5 HELIX 5 5 PRO A 267 GLY A 271 5 5 HELIX 6 6 ASP B 180 MSE B 184 5 5 HELIX 7 7 PRO B 226 THR B 230 5 5 HELIX 8 8 LEU B 237 MSE B 241 5 5 HELIX 9 9 PRO B 244 GLY B 248 5 5 HELIX 10 10 SER B 252 TYR B 256 5 5 HELIX 11 11 PRO B 267 GLY B 271 5 5 HELIX 12 12 ASP D 180 MSE D 184 5 5 HELIX 13 13 PRO D 226 THR D 230 5 5 HELIX 14 14 LEU D 237 MSE D 241 5 5 HELIX 15 15 PRO D 244 GLY D 248 5 5 HELIX 16 16 SER D 252 TYR D 256 5 5 HELIX 17 17 PRO D 267 GLY D 271 5 5 HELIX 18 18 ASP E 180 MSE E 184 5 5 HELIX 19 19 PRO E 226 THR E 230 5 5 HELIX 20 20 LEU E 237 MSE E 241 5 5 HELIX 21 21 PRO E 244 GLY E 248 5 5 HELIX 22 22 SER E 252 TYR E 256 5 5 HELIX 23 23 PRO E 267 GLY E 271 5 5 SHEET 1 A15 LEU A 298 ARG A 299 0 SHEET 2 A15 CYS A 329 TYR A 331 -1 O TYR A 331 N LEU A 298 SHEET 3 A15 LEU A 321 LYS A 324 -1 N PHE A 323 O TRP A 330 SHEET 4 A15 LEU A 273 PHE A 277 -1 N ASP A 276 O ARG A 322 SHEET 5 A15 TRP A 210 PHE A 217 -1 N PHE A 217 O LEU A 273 SHEET 6 A15 TYR A 200 LYS A 206 -1 N GLU A 203 O ARG A 214 SHEET 7 A15 LYS A 192 ALA A 196 -1 N ALA A 193 O SER A 204 SHEET 8 A15 SER A 185 LYS A 189 -1 N SER A 185 O ALA A 196 SHEET 9 A15 SER B 185 LYS B 189 -1 O ALA B 186 N ILE A 188 SHEET 10 A15 LYS B 192 ALA B 196 -1 O ALA B 196 N SER B 185 SHEET 11 A15 TYR B 200 LYS B 206 -1 O SER B 204 N ALA B 193 SHEET 12 A15 TRP B 210 PHE B 217 -1 O ALA B 213 N GLU B 203 SHEET 13 A15 LEU B 273 PHE B 277 -1 O LEU B 273 N PHE B 217 SHEET 14 A15 LEU B 321 LYS B 324 -1 O ARG B 322 N ASP B 276 SHEET 15 A15 CYS B 329 TYR B 331 -1 O TRP B 330 N PHE B 323 SHEET 1 B 3 THR A 284 VAL A 287 0 SHEET 2 B 3 GLU A 310 CYS A 313 1 O TRP A 311 N THR A 284 SHEET 3 B 3 ARG A 336 PRO A 337 -1 O ARG A 336 N CYS A 312 SHEET 1 C 3 THR B 284 VAL B 287 0 SHEET 2 C 3 GLU B 310 CYS B 313 1 O TRP B 311 N THR B 284 SHEET 3 C 3 ILE B 335 PRO B 337 -1 O ARG B 336 N CYS B 312 SHEET 1 D16 LEU D 298 ARG D 299 0 SHEET 2 D16 CYS D 329 TYR D 331 -1 O TYR D 331 N LEU D 298 SHEET 3 D16 LEU D 321 LYS D 324 -1 N PHE D 323 O TRP D 330 SHEET 4 D16 LEU D 273 PHE D 277 -1 N ASP D 276 O ARG D 322 SHEET 5 D16 TRP D 210 PHE D 217 -1 N PHE D 217 O LEU D 273 SHEET 6 D16 TYR D 200 LYS D 206 -1 N GLU D 203 O ALA D 213 SHEET 7 D16 LYS D 192 ALA D 196 -1 N ALA D 193 O SER D 204 SHEET 8 D16 SER D 185 LYS D 189 -1 N SER D 185 O ALA D 196 SHEET 9 D16 SER E 185 LYS E 189 -1 O ILE E 188 N ALA D 186 SHEET 10 D16 LYS E 192 ALA E 196 -1 O ALA E 196 N SER E 185 SHEET 11 D16 TYR E 200 LYS E 206 -1 O SER E 204 N ALA E 193 SHEET 12 D16 TRP E 210 PHE E 217 -1 O SER E 216 N TRP E 201 SHEET 13 D16 LEU E 273 PHE E 277 -1 O LEU E 275 N ALA E 215 SHEET 14 D16 LEU E 321 LYS E 324 -1 O ARG E 322 N ASP E 276 SHEET 15 D16 CYS E 329 TYR E 331 -1 O TRP E 330 N PHE E 323 SHEET 16 D16 LEU E 298 ARG E 299 -1 N LEU E 298 O TYR E 331 SHEET 1 E 3 THR D 284 VAL D 287 0 SHEET 2 E 3 GLU D 310 CYS D 313 1 O TRP D 311 N THR D 284 SHEET 3 E 3 ILE D 335 PRO D 337 -1 O ARG D 336 N CYS D 312 SHEET 1 F 3 THR E 284 VAL E 287 0 SHEET 2 F 3 GLU E 310 CYS E 313 1 O TRP E 311 N THR E 284 SHEET 3 F 3 ILE E 335 PRO E 337 -1 O ARG E 336 N CYS E 312 SSBOND 1 CYS A 179 CYS A 223 1555 1555 2.04 SSBOND 2 CYS A 280 CYS A 329 1555 1555 2.04 SSBOND 3 CYS A 291 CYS A 312 1555 1555 2.03 SSBOND 4 CYS A 313 CYS A 316 1555 1555 2.03 SSBOND 5 CYS B 179 CYS B 223 1555 1555 2.03 SSBOND 6 CYS B 280 CYS B 329 1555 1555 2.03 SSBOND 7 CYS B 291 CYS B 312 1555 1555 2.05 SSBOND 8 CYS B 313 CYS B 316 1555 1555 2.03 SSBOND 9 CYS D 179 CYS D 223 1555 1555 2.03 SSBOND 10 CYS D 280 CYS D 329 1555 1555 2.03 SSBOND 11 CYS D 291 CYS D 312 1555 1555 2.04 SSBOND 12 CYS D 313 CYS D 316 1555 1555 2.04 SSBOND 13 CYS E 179 CYS E 223 1555 1555 2.03 SSBOND 14 CYS E 280 CYS E 329 1555 1555 2.02 SSBOND 15 CYS E 291 CYS E 312 1555 1555 2.03 SSBOND 16 CYS E 313 CYS E 316 1555 1555 2.03 LINK C LEU A 183 N MSE A 184 1555 1555 1.33 LINK C MSE A 184 N SER A 185 1555 1555 1.33 LINK C ASP A 197 N MSE A 198 1555 1555 1.33 LINK C MSE A 198 N GLY A 199 1555 1555 1.33 LINK C GLU A 240 N MSE A 241 1555 1555 1.33 LINK C MSE A 241 N ILE A 242 1555 1555 1.33 LINK C GLY A 332 N MSE A 333 1555 1555 1.33 LINK C MSE A 333 N GLU A 334 1555 1555 1.33 LINK C SER A 348 N MSE A 349 1555 1555 1.33 LINK C MSE A 349 N VAL A 350 1555 1555 1.33 LINK C LEU B 183 N MSE B 184 1555 1555 1.33 LINK C MSE B 184 N SER B 185 1555 1555 1.33 LINK C ASP B 197 N MSE B 198 1555 1555 1.33 LINK C MSE B 198 N GLY B 199 1555 1555 1.33 LINK C GLU B 240 N MSE B 241 1555 1555 1.33 LINK C MSE B 241 N ILE B 242 1555 1555 1.33 LINK C GLY B 332 N MSE B 333 1555 1555 1.33 LINK C MSE B 333 N GLU B 334 1555 1555 1.33 LINK C SER B 348 N MSE B 349 1555 1555 1.32 LINK C MSE B 349 N VAL B 350 1555 1555 1.32 LINK C LEU D 183 N MSE D 184 1555 1555 1.33 LINK C MSE D 184 N SER D 185 1555 1555 1.33 LINK C ASP D 197 N MSE D 198 1555 1555 1.33 LINK C MSE D 198 N GLY D 199 1555 1555 1.33 LINK C GLU D 240 N MSE D 241 1555 1555 1.33 LINK C MSE D 241 N ILE D 242 1555 1555 1.33 LINK C GLY D 332 N MSE D 333 1555 1555 1.32 LINK C MSE D 333 N GLU D 334 1555 1555 1.33 LINK C SER D 348 N MSE D 349 1555 1555 1.33 LINK C MSE D 349 N VAL D 350 1555 1555 1.33 LINK C LEU E 183 N MSE E 184 1555 1555 1.33 LINK C MSE E 184 N SER E 185 1555 1555 1.33 LINK C ASP E 197 N MSE E 198 1555 1555 1.33 LINK C MSE E 198 N GLY E 199 1555 1555 1.33 LINK C GLU E 240 N MSE E 241 1555 1555 1.33 LINK C MSE E 241 N ILE E 242 1555 1555 1.33 LINK C GLY E 332 N MSE E 333 1555 1555 1.33 LINK C MSE E 333 N GLU E 334 1555 1555 1.33 LINK C SER E 348 N MSE E 349 1555 1555 1.33 LINK C MSE E 349 N VAL E 350 1555 1555 1.33 CISPEP 1 LEU A 318 PRO A 319 0 -1.19 CISPEP 2 LEU B 318 PRO B 319 0 -0.06 CISPEP 3 LEU D 318 PRO D 319 0 0.21 CISPEP 4 LEU E 318 PRO E 319 0 -0.85 SITE 1 AC1 4 TRP A 232 ASN A 234 LYS B 227 ASN E 293 SITE 1 AC2 6 ASN A 234 GLY A 235 HOH A 522 HOH A 524 SITE 2 AC2 6 ASN B 234 GLY B 235 SITE 1 AC3 7 LYS A 206 TRP A 210 HOH A 528 HIS B 181 SITE 2 AC3 7 PRO B 226 SER B 228 HIS B 229 SITE 1 AC4 5 HIS A 181 SER A 228 HIS A 229 LYS B 206 SITE 2 AC4 5 TRP B 210 SITE 1 AC5 5 ASN A 293 HOH A 530 LYS D 227 TRP E 232 SITE 2 AC5 5 ASN E 234 SITE 1 AC6 6 ILE A 308 HIS A 309 GLU A 310 LYS A 339 SITE 2 AC6 6 GLU A 340 HOH A 513 SITE 1 AC7 7 ILE B 308 HIS B 309 GLU B 310 LYS B 339 SITE 2 AC7 7 HOH B 528 HOH B 532 HIS D 290 SITE 1 AC8 3 LYS A 227 TRP B 232 ASN B 234 SITE 1 AC9 6 ASN D 234 GLY D 235 HOH D 518 ASN E 234 SITE 2 AC9 6 GLY E 235 HOH E 508 SITE 1 BC1 3 TRP D 232 ASN D 234 LYS E 227 SITE 1 BC2 7 HIS B 290 ILE D 308 HIS D 309 GLU D 310 SITE 2 BC2 7 LYS D 339 GLU D 340 HOH D 515 SITE 1 BC3 6 LYS D 206 TRP D 210 HOH D 517 HIS E 181 SITE 2 BC3 6 SER E 228 HIS E 229 SITE 1 BC4 5 HIS D 181 SER D 228 HIS D 229 LYS E 206 SITE 2 BC4 5 TRP E 210 SITE 1 BC5 6 LYS E 306 ILE E 308 HIS E 309 GLU E 310 SITE 2 BC5 6 LYS E 339 HOH E 506 CRYST1 109.175 81.962 97.189 90.00 97.78 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009160 0.000000 0.001252 0.00000 SCALE2 0.000000 0.012201 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010385 0.00000