HEADER DNA BINDING PROTEIN 23-JAN-14 4OKY TITLE CRYSTAL STRUCTURE OF PVURTS1I, A 5-HYDROXYMETHYLCYTOSINE DNA TITLE 2 RESTRICTION ENDONUCLEASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RESTRICTION ENDONUCLEASE PVURTS1 I; COMPND 3 CHAIN: C; COMPND 4 SYNONYM: RESTRICTION ENDONUCLEASE PVURTS1I; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PROTEUS VULGARIS; SOURCE 3 ORGANISM_TAXID: 585; SOURCE 4 GENE: PVURTS1I; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA2(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS SRA-LIKE DOMAIN, RESTRICTION ENDONUCLEASE, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.L.WANG,C.SHAO,J.Y.ZANG REVDAT 2 17-DEC-14 4OKY 1 JRNL REVDAT 1 10-SEP-14 4OKY 0 JRNL AUTH C.SHAO,C.WANG,J.ZANG JRNL TITL STRUCTURAL BASIS FOR THE SUBSTRATE SELECTIVITY OF PVURTS1I, JRNL TITL 2 A 5-HYDROXYMETHYLCYTOSINE DNA RESTRICTION ENDONUCLEASE JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 70 2477 2014 JRNL REFN ISSN 0907-4449 JRNL PMID 25195760 JRNL DOI 10.1107/S139900471401606X REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 12620 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.254 REMARK 3 R VALUE (WORKING SET) : 0.252 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 662 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 932 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.39 REMARK 3 BIN R VALUE (WORKING SET) : 0.3220 REMARK 3 BIN FREE R VALUE SET COUNT : 46 REMARK 3 BIN FREE R VALUE : 0.2810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2184 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.95000 REMARK 3 B22 (A**2) : -0.95000 REMARK 3 B33 (A**2) : 1.90000 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.562 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.355 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.275 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.504 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.900 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.876 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2229 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2023 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3031 ; 1.487 ; 1.941 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4592 ; 0.847 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 280 ; 7.484 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 107 ;36.111 ;23.645 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 330 ;24.478 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;25.153 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 340 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2588 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 548 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1129 ; 3.154 ; 5.827 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1128 ; 3.153 ; 5.823 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1406 ; 5.264 ; 8.723 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1407 ; 3.946 ; 8.303 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1100 ; 2.997 ; 5.814 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1076 ; 4.060 ; 5.461 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1592 ; 5.135 ; 8.130 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2552 ; 5.473 ;43.615 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2550 ; 5.474 ;43.588 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4OKY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-JAN-14. REMARK 100 THE RCSB ID CODE IS RCSB084623. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 10.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13311 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 56.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 12.900 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 10.500 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.128M NAH2PO4, 0.752M K2HPO4, 0.1M REMARK 280 CAPS PH 10.5, 0.19M LI2SO4, 6%(V/V) GLYCEROL , VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 286K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 22.56000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 80.10500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 80.10500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.84000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 80.10500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 80.10500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 11.28000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 80.10500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 80.10500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 33.84000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 80.10500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 80.10500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 11.28000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 22.56000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 22.56000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU C 71 REMARK 465 ALA C 72 REMARK 465 HIS C 73 REMARK 465 HIS C 74 REMARK 465 ASP C 75 REMARK 465 SER C 76 REMARK 465 GLU C 178 REMARK 465 GLY C 179 REMARK 465 HIS C 180 REMARK 465 HIS C 181 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG C 9 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 17 CG CD CE NZ REMARK 470 TRP C 19 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP C 19 CZ3 CH2 REMARK 470 GLU C 20 CG CD OE1 OE2 REMARK 470 LYS C 46 CG CD CE NZ REMARK 470 GLU C 47 CG CD OE1 OE2 REMARK 470 HIS C 49 CG ND1 CD2 CE1 NE2 REMARK 470 ILE C 106 CG1 CG2 CD1 REMARK 470 GLU C 110 CG CD OE1 OE2 REMARK 470 LYS C 113 CG CD CE NZ REMARK 470 ASP C 116 CG OD1 OD2 REMARK 470 GLU C 117 CG CD OE1 OE2 REMARK 470 ARG C 120 CG CD NE CZ NH1 NH2 REMARK 470 LEU C 121 CG CD1 CD2 REMARK 470 LYS C 123 CG CD CE NZ REMARK 470 LYS C 125 CG CD CE NZ REMARK 470 GLU C 127 CG CD OE1 OE2 REMARK 470 GLU C 130 CG CD OE1 OE2 REMARK 470 PHE C 135 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE C 136 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG C 137 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 164 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 176 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 177 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 182 CG CD OE1 NE2 REMARK 470 GLU C 211 CG CD OE1 OE2 REMARK 470 LYS C 216 CG CD CE NZ REMARK 470 LYS C 225 CG CD CE NZ REMARK 470 ARG C 256 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 260 CG CD NE CZ NH1 NH2 REMARK 470 SER C 272 OG REMARK 470 ARG C 290 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 292 CG CD OE1 NE2 REMARK 470 ASN C 293 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE C 60 O LEU C 63 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN C 160 CB - CA - C ANGL. DEV. = 13.3 DEGREES REMARK 500 ARG C 208 CB - CA - C ANGL. DEV. = 15.3 DEGREES REMARK 500 ARG C 208 N - CA - C ANGL. DEV. = -18.3 DEGREES REMARK 500 ARG C 251 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP C 35 32.54 -98.98 REMARK 500 LYS C 125 1.35 -67.91 REMARK 500 ARG C 167 -7.01 -57.41 REMARK 500 PHE C 206 72.64 -102.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 VAL C 246 24.8 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL DBREF 4OKY C 1 293 UNP Q52612 Q52612_PROVU 1 293 SEQRES 1 C 293 MSE SER LYS THR ASP TYR ILE LEU ARG ALA LEU SER LYS SEQRES 2 C 293 ILE SER HIS LYS ARG TRP GLU HIS TYR ILE ILE ASN ARG SEQRES 3 C 293 VAL VAL HIS THR LEU ASP ASP PRO ASP ILE GLU PHE VAL SEQRES 4 C 293 CYS GLN GLN CYS ILE ARG LYS GLU GLY HIS LEU GLY LYS SEQRES 5 C 293 ILE TYR LEU ALA ASP LEU LEU PHE PRO GLN LEU ASN LEU SEQRES 6 C 293 TYR LEU GLU ILE ASP GLU ALA HIS HIS ASP SER ASN ASP SEQRES 7 C 293 ALA ARG LYS ALA ASP ALA VAL ARG ARG LEU ASP ILE VAL SEQRES 8 C 293 GLU ALA THR GLY PHE GLN GLU GLU ARG ILE PRO ALA SER SEQRES 9 C 293 ASN ILE THR LEU SER GLU VAL ASN LYS LEU VAL ASP GLU SEQRES 10 C 293 PHE VAL ARG LEU VAL LYS ASP LYS LYS GLU GLU LEU GLU SEQRES 11 C 293 ASN GLN GLY LEU PHE PHE ARG TRP ASP TYR ASP GLU ARG SEQRES 12 C 293 TYR SER ALA LYS LYS HIS ILE ASN THR GLY TYR MSE ALA SEQRES 13 C 293 VAL GLY PRO ASN SER VAL PHE ARG TYR HIS ARG ASP ALA SEQRES 14 C 293 LEU GLN CYS PHE GLY TYR ARG ARG GLU GLY HIS HIS GLN SEQRES 15 C 293 SER GLY GLY TRP ALA LEU PRO ALA GLU VAL ALA GLN SER SEQRES 16 C 293 ILE GLY LEU THR GLY ARG VAL MSE VAL TRP PHE PRO ARG SEQRES 17 C 293 LEU TYR GLU ALA GLY GLU TRP LYS ASN ALA LEU SER ALA SEQRES 18 C 293 ASP GLY ASN LYS ILE THR GLU GLN SER LEU ASN ALA THR SEQRES 19 C 293 ARG ASN TYR GLN GLU THR TRP ASP TYR ARG ILE VAL MSE SEQRES 20 C 293 ALA HIS SER ARG ASP GLU LEU ASN ARG THR LEU TYR ARG SEQRES 21 C 293 PHE LEU GLY VAL PHE ALA ILE ASP VAL ASP LYS SER SER SEQRES 22 C 293 ASP GLU VAL LYS VAL PHE SER ARG VAL TYR SER ARG VAL SEQRES 23 C 293 ASN VAL TYR ARG SER GLN ASN MODRES 4OKY MSE C 1 MET SELENOMETHIONINE MODRES 4OKY MSE C 155 MET SELENOMETHIONINE MODRES 4OKY MSE C 203 MET SELENOMETHIONINE MODRES 4OKY MSE C 247 MET SELENOMETHIONINE HET MSE C 1 8 HET MSE C 155 8 HET MSE C 203 8 HET MSE C 247 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 4(C5 H11 N O2 SE) HELIX 1 1 SER C 2 LYS C 13 1 12 HELIX 2 2 LYS C 17 ASP C 32 1 16 HELIX 3 3 ASP C 78 ARG C 87 1 10 HELIX 4 4 THR C 107 GLN C 132 1 26 HELIX 5 5 ASP C 139 ARG C 143 5 5 HELIX 6 6 ALA C 146 GLY C 153 1 8 HELIX 7 7 TYR C 165 LEU C 170 1 6 HELIX 8 8 GLN C 171 GLY C 174 5 4 HELIX 9 9 PRO C 189 ILE C 196 1 8 SHEET 1 A 5 VAL C 91 GLU C 92 0 SHEET 2 A 5 VAL C 39 ARG C 45 1 N ARG C 45 O VAL C 91 SHEET 3 A 5 ILE C 53 PHE C 60 -1 O TYR C 54 N ILE C 44 SHEET 4 A 5 LEU C 65 ASP C 70 -1 O LEU C 67 N LEU C 58 SHEET 5 A 5 GLN C 97 PRO C 102 1 O ILE C 101 N GLU C 68 SHEET 1 B 2 TYR C 154 ALA C 156 0 SHEET 2 B 2 ARG C 285 ASN C 287 -1 O VAL C 286 N MSE C 155 SHEET 1 C 5 VAL C 162 PHE C 163 0 SHEET 2 C 5 THR C 257 ASP C 268 -1 O TYR C 259 N PHE C 163 SHEET 3 C 5 TYR C 243 ARG C 251 -1 N ARG C 244 O PHE C 265 SHEET 4 C 5 VAL C 202 TRP C 205 1 N MSE C 203 O ILE C 245 SHEET 5 C 5 GLY C 185 ALA C 187 -1 N TRP C 186 O VAL C 204 SHEET 1 D 6 VAL C 162 PHE C 163 0 SHEET 2 D 6 THR C 257 ASP C 268 -1 O TYR C 259 N PHE C 163 SHEET 3 D 6 VAL C 276 TYR C 283 -1 O TYR C 283 N VAL C 264 SHEET 4 D 6 LYS C 225 SER C 230 -1 N GLU C 228 O LYS C 277 SHEET 5 D 6 TRP C 215 LEU C 219 -1 N LYS C 216 O GLN C 229 SHEET 6 D 6 GLU C 211 ALA C 212 -1 N ALA C 212 O TRP C 215 LINK C MSE C 1 N SER C 2 1555 1555 1.33 LINK C TYR C 154 N MSE C 155 1555 1555 1.33 LINK C MSE C 155 N ALA C 156 1555 1555 1.34 LINK C VAL C 202 N MSE C 203 1555 1555 1.33 LINK C MSE C 203 N VAL C 204 1555 1555 1.32 LINK C VAL C 246 N MSE C 247 1555 1555 1.34 LINK C MSE C 247 N ALA C 248 1555 1555 1.32 CRYST1 160.210 160.210 45.120 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006242 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006242 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022163 0.00000 HETATM 1 N MSE C 1 49.660 -30.388 -3.859 1.00 75.49 N HETATM 2 CA MSE C 1 48.483 -30.992 -3.145 1.00 72.69 C HETATM 3 C MSE C 1 47.351 -30.008 -3.148 1.00 65.57 C HETATM 4 O MSE C 1 47.512 -28.868 -2.702 1.00 62.69 O HETATM 5 CB MSE C 1 48.821 -31.361 -1.699 1.00 78.68 C HETATM 6 CG MSE C 1 47.803 -32.371 -1.166 1.00 84.89 C HETATM 7 SE MSE C 1 47.782 -32.605 0.800 1.00 91.10 SE HETATM 8 CE MSE C 1 47.714 -30.717 1.303 1.00 87.79 C