HEADER HYDROLASE 23-JAN-14 4OL7 TITLE CRYSTAL STRUCTURE OF STAPHYLOCOCCAL NUCLEASE VARIANT DELTA+PHS V66E TITLE 2 A109E AT CRYOGENIC TEMPERATURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: THERMONUCLEASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: NUCLEASE A (UNP RESIDUES 83-231); COMPND 5 SYNONYM: TNASE, MICROCOCCAL NUCLEASE, STAPHYLOCOCCAL NUCLEASE; COMPND 6 EC: 3.1.31.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET24A+ KEYWDS NUCLEASE, PDTP, PH-SENSITIVE SWITCH, INTERNAL IONIZABLE GROUPS, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.C.BELL-UPP,J.L.SCHLESSMAN,B.GARCIA-MORENO E. REVDAT 3 20-SEP-23 4OL7 1 REMARK SEQADV LINK REVDAT 2 04-APR-18 4OL7 1 REMARK REVDAT 1 28-JAN-15 4OL7 0 JRNL AUTH P.C.BELL-UPP,J.L.SORENSON,A.C.ROBINSON,E.L.WHEELER,M.PECK, JRNL AUTH 2 I.CATUREGLI,J.L.SCHLESSMAN,B.GARCIA-MORENO E. JRNL TITL CRYSTAL STRUCTURE OF STAPHYLOCOCCAL NUCLEASE VARIANT JRNL TITL 2 DELTA+PHS V66E A109E AT CRYOGENIC TEMPERATURE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 32906 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1669 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.67 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.71 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2242 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.1810 REMARK 3 BIN FREE R VALUE SET COUNT : 148 REMARK 3 BIN FREE R VALUE : 0.2490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2157 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.59000 REMARK 3 B22 (A**2) : -0.09000 REMARK 3 B33 (A**2) : -0.50000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.096 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.094 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.982 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2411 ; 0.016 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2437 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3274 ; 1.798 ; 2.010 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5683 ; 0.797 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 315 ; 6.238 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;31.511 ;25.238 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 512 ;14.146 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;18.061 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 356 ; 0.116 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2653 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 506 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1122 ; 0.779 ; 0.657 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1121 ; 0.778 ; 0.655 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1412 ; 1.253 ; 0.977 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 16 REMARK 3 ORIGIN FOR THE GROUP (A): 26.0607 5.8326 -1.6492 REMARK 3 T TENSOR REMARK 3 T11: 0.0941 T22: 0.0306 REMARK 3 T33: 0.1152 T12: -0.0219 REMARK 3 T13: 0.0037 T23: 0.0130 REMARK 3 L TENSOR REMARK 3 L11: 0.8926 L22: 4.5304 REMARK 3 L33: 1.7160 L12: -1.4501 REMARK 3 L13: 0.7059 L23: -0.7166 REMARK 3 S TENSOR REMARK 3 S11: -0.0643 S12: 0.0752 S13: 0.2517 REMARK 3 S21: 0.0475 S22: -0.0793 S23: -0.7111 REMARK 3 S31: -0.0407 S32: 0.2129 S33: 0.1436 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 17 A 81 REMARK 3 ORIGIN FOR THE GROUP (A): 14.4803 2.2939 0.2118 REMARK 3 T TENSOR REMARK 3 T11: 0.0622 T22: 0.0235 REMARK 3 T33: 0.0397 T12: 0.0000 REMARK 3 T13: -0.0047 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 1.1363 L22: 1.1766 REMARK 3 L33: 1.0928 L12: 0.1845 REMARK 3 L13: 0.1941 L23: -0.1623 REMARK 3 S TENSOR REMARK 3 S11: -0.0322 S12: 0.0009 S13: 0.0427 REMARK 3 S21: -0.0608 S22: 0.0109 S23: -0.0585 REMARK 3 S31: -0.0834 S32: -0.0017 S33: 0.0213 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 82 A 132 REMARK 3 ORIGIN FOR THE GROUP (A): 20.6996 -3.2096 5.0110 REMARK 3 T TENSOR REMARK 3 T11: 0.0321 T22: 0.0191 REMARK 3 T33: 0.0312 T12: 0.0146 REMARK 3 T13: 0.0016 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 0.6129 L22: 0.6950 REMARK 3 L33: 1.0655 L12: -0.0898 REMARK 3 L13: 0.1340 L23: 0.0033 REMARK 3 S TENSOR REMARK 3 S11: -0.0286 S12: -0.0406 S13: -0.0246 REMARK 3 S21: 0.0094 S22: 0.0268 S23: -0.0943 REMARK 3 S31: 0.0387 S32: 0.0524 S33: 0.0018 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 133 A 142 REMARK 3 ORIGIN FOR THE GROUP (A): 11.6051 -9.7423 17.7182 REMARK 3 T TENSOR REMARK 3 T11: 0.0751 T22: 0.0463 REMARK 3 T33: 0.0582 T12: 0.0050 REMARK 3 T13: 0.0147 T23: 0.0417 REMARK 3 L TENSOR REMARK 3 L11: 7.3588 L22: 4.9285 REMARK 3 L33: 8.5636 L12: -0.2949 REMARK 3 L13: 3.0573 L23: 1.5741 REMARK 3 S TENSOR REMARK 3 S11: 0.0560 S12: -0.4778 S13: -0.5901 REMARK 3 S21: 0.0898 S22: 0.0245 S23: 0.2112 REMARK 3 S31: 0.6431 S32: -0.2535 S33: -0.0805 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 51 REMARK 3 ORIGIN FOR THE GROUP (A): 14.9450 -5.4343 -29.9686 REMARK 3 T TENSOR REMARK 3 T11: 0.0376 T22: 0.0538 REMARK 3 T33: 0.0267 T12: -0.0011 REMARK 3 T13: -0.0182 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 2.4056 L22: 1.5518 REMARK 3 L33: 1.5405 L12: -0.3765 REMARK 3 L13: -0.7405 L23: -0.1079 REMARK 3 S TENSOR REMARK 3 S11: 0.0155 S12: 0.0349 S13: -0.1470 REMARK 3 S21: -0.0487 S22: -0.0764 S23: -0.0727 REMARK 3 S31: 0.0181 S32: 0.0516 S33: 0.0610 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 52 B 81 REMARK 3 ORIGIN FOR THE GROUP (A): 16.5560 -3.1428 -24.0120 REMARK 3 T TENSOR REMARK 3 T11: 0.0318 T22: 0.0482 REMARK 3 T33: 0.0380 T12: -0.0098 REMARK 3 T13: -0.0191 T23: 0.0203 REMARK 3 L TENSOR REMARK 3 L11: 1.1124 L22: 1.5105 REMARK 3 L33: 1.2918 L12: -0.4925 REMARK 3 L13: -0.3073 L23: 0.0958 REMARK 3 S TENSOR REMARK 3 S11: 0.0126 S12: -0.0005 S13: -0.0504 REMARK 3 S21: 0.0805 S22: -0.0582 S23: -0.0990 REMARK 3 S31: -0.0623 S32: 0.0738 S33: 0.0456 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 82 B 137 REMARK 3 ORIGIN FOR THE GROUP (A): 7.8474 -8.2939 -20.6771 REMARK 3 T TENSOR REMARK 3 T11: 0.0209 T22: 0.0313 REMARK 3 T33: 0.0236 T12: -0.0084 REMARK 3 T13: 0.0037 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.4516 L22: 0.6911 REMARK 3 L33: 1.4954 L12: -0.0604 REMARK 3 L13: -0.0995 L23: 0.0950 REMARK 3 S TENSOR REMARK 3 S11: -0.0258 S12: -0.0076 S13: -0.0801 REMARK 3 S21: 0.0854 S22: -0.0450 S23: 0.0436 REMARK 3 S31: -0.0331 S32: -0.1112 S33: 0.0708 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 138 B 142 REMARK 3 ORIGIN FOR THE GROUP (A): 1.4685 2.3230 -11.6512 REMARK 3 T TENSOR REMARK 3 T11: 0.0762 T22: 0.0796 REMARK 3 T33: 0.0562 T12: 0.0393 REMARK 3 T13: 0.0199 T23: -0.0425 REMARK 3 L TENSOR REMARK 3 L11: 11.5796 L22: 17.2360 REMARK 3 L33: 14.3376 L12: 8.8386 REMARK 3 L13: 4.8285 L23: 1.1454 REMARK 3 S TENSOR REMARK 3 S11: 0.0816 S12: -0.6848 S13: 0.5666 REMARK 3 S21: 0.6697 S22: -0.4397 S23: 0.9276 REMARK 3 S31: -0.7698 S32: -0.9572 S33: 0.3581 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4OL7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000084632. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : OTHER REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : GE(111) REMARK 200 OPTICS : MULTI-LAYER OPTICS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : APEX II CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : SAINT REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32967 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.670 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 13.02 REMARK 200 R MERGE (I) : 0.02570 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.3300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.57 REMARK 200 R MERGE FOR SHELL (I) : 0.22810 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.370 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.2 REMARK 200 STARTING MODEL: PDB ENTRY 3BDC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% MPD, 25 MM POTASSIUM PHOSPHATE, REMARK 280 CALCIUM CHLORIDE, PDTP, PH 6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.57250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.06250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.07950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.06250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.57250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.07950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 143 REMARK 465 ASN A 144 REMARK 465 ALA A 145 REMARK 465 ASP A 146 REMARK 465 SER A 147 REMARK 465 GLY A 148 REMARK 465 GLN A 149 REMARK 465 ALA B 1 REMARK 465 THR B 2 REMARK 465 SER B 3 REMARK 465 THR B 4 REMARK 465 ASP B 143 REMARK 465 ASN B 144 REMARK 465 ALA B 145 REMARK 465 ASP B 146 REMARK 465 SER B 147 REMARK 465 GLY B 148 REMARK 465 GLN B 149 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 35 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 3 171.28 -56.37 REMARK 500 ILE A 18 -70.20 -113.30 REMARK 500 ASN A 138 -111.78 58.73 REMARK 500 ASN B 138 -109.49 59.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 19 OD2 REMARK 620 2 ASP A 19 OD1 47.3 REMARK 620 3 ASP A 21 OD1 123.6 76.5 REMARK 620 4 HOH A 307 O 158.4 154.1 77.6 REMARK 620 5 HOH A 310 O 92.4 87.5 87.5 92.3 REMARK 620 6 HOH A 312 O 84.8 77.5 79.4 96.9 162.0 REMARK 620 7 HOH A 370 O 80.1 126.8 156.0 79.1 87.6 109.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 19 OD2 REMARK 620 2 ASP B 19 OD1 47.8 REMARK 620 3 ASP B 21 OD1 125.1 77.6 REMARK 620 4 HOH B 304 O 83.6 77.8 78.8 REMARK 620 5 HOH B 314 O 155.9 155.6 78.1 96.1 REMARK 620 6 HOH B 322 O 96.7 89.7 87.2 162.9 90.5 REMARK 620 7 HOH B 347 O 77.1 122.4 155.8 116.5 81.6 80.0 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE THP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE THP B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 202 DBREF 4OL7 A 1 149 UNP P00644 NUC_STAAU 83 231 DBREF 4OL7 B 1 149 UNP P00644 NUC_STAAU 83 231 SEQADV 4OL7 A UNP P00644 THR 126 DELETION SEQADV 4OL7 A UNP P00644 LYS 127 DELETION SEQADV 4OL7 A UNP P00644 HIS 128 DELETION SEQADV 4OL7 A UNP P00644 PRO 129 DELETION SEQADV 4OL7 A UNP P00644 LYS 130 DELETION SEQADV 4OL7 A UNP P00644 LYS 131 DELETION SEQADV 4OL7 PHE A 50 UNP P00644 GLY 132 ENGINEERED MUTATION SEQADV 4OL7 ASN A 51 UNP P00644 VAL 133 ENGINEERED MUTATION SEQADV 4OL7 GLU A 66 UNP P00644 VAL 148 ENGINEERED MUTATION SEQADV 4OL7 GLU A 109 UNP P00644 ALA 191 ENGINEERED MUTATION SEQADV 4OL7 GLY A 117 UNP P00644 PRO 199 ENGINEERED MUTATION SEQADV 4OL7 LEU A 124 UNP P00644 HIS 206 ENGINEERED MUTATION SEQADV 4OL7 ALA A 128 UNP P00644 SER 210 ENGINEERED MUTATION SEQADV 4OL7 B UNP P00644 THR 126 DELETION SEQADV 4OL7 B UNP P00644 LYS 127 DELETION SEQADV 4OL7 B UNP P00644 HIS 128 DELETION SEQADV 4OL7 B UNP P00644 PRO 129 DELETION SEQADV 4OL7 B UNP P00644 LYS 130 DELETION SEQADV 4OL7 B UNP P00644 LYS 131 DELETION SEQADV 4OL7 PHE B 50 UNP P00644 GLY 132 ENGINEERED MUTATION SEQADV 4OL7 ASN B 51 UNP P00644 VAL 133 ENGINEERED MUTATION SEQADV 4OL7 GLU B 66 UNP P00644 VAL 148 ENGINEERED MUTATION SEQADV 4OL7 GLU B 109 UNP P00644 ALA 191 ENGINEERED MUTATION SEQADV 4OL7 GLY B 117 UNP P00644 PRO 199 ENGINEERED MUTATION SEQADV 4OL7 LEU B 124 UNP P00644 HIS 206 ENGINEERED MUTATION SEQADV 4OL7 ALA B 128 UNP P00644 SER 210 ENGINEERED MUTATION SEQRES 1 A 143 ALA THR SER THR LYS LYS LEU HIS LYS GLU PRO ALA THR SEQRES 2 A 143 LEU ILE LYS ALA ILE ASP GLY ASP THR VAL LYS LEU MET SEQRES 3 A 143 TYR LYS GLY GLN PRO MET THR PHE ARG LEU LEU LEU VAL SEQRES 4 A 143 ASP THR PRO GLU PHE ASN GLU LYS TYR GLY PRO GLU ALA SEQRES 5 A 143 SER ALA PHE THR LYS LYS MET GLU GLU ASN ALA LYS LYS SEQRES 6 A 143 ILE GLU VAL GLU PHE ASP LYS GLY GLN ARG THR ASP LYS SEQRES 7 A 143 TYR GLY ARG GLY LEU ALA TYR ILE TYR ALA ASP GLY LYS SEQRES 8 A 143 MET VAL ASN GLU ALA LEU VAL ARG GLN GLY LEU GLU LYS SEQRES 9 A 143 VAL ALA TYR VAL TYR LYS GLY ASN ASN THR HIS GLU GLN SEQRES 10 A 143 LEU LEU ARG LYS ALA GLU ALA GLN ALA LYS LYS GLU LYS SEQRES 11 A 143 LEU ASN ILE TRP SER GLU ASP ASN ALA ASP SER GLY GLN SEQRES 1 B 143 ALA THR SER THR LYS LYS LEU HIS LYS GLU PRO ALA THR SEQRES 2 B 143 LEU ILE LYS ALA ILE ASP GLY ASP THR VAL LYS LEU MET SEQRES 3 B 143 TYR LYS GLY GLN PRO MET THR PHE ARG LEU LEU LEU VAL SEQRES 4 B 143 ASP THR PRO GLU PHE ASN GLU LYS TYR GLY PRO GLU ALA SEQRES 5 B 143 SER ALA PHE THR LYS LYS MET GLU GLU ASN ALA LYS LYS SEQRES 6 B 143 ILE GLU VAL GLU PHE ASP LYS GLY GLN ARG THR ASP LYS SEQRES 7 B 143 TYR GLY ARG GLY LEU ALA TYR ILE TYR ALA ASP GLY LYS SEQRES 8 B 143 MET VAL ASN GLU ALA LEU VAL ARG GLN GLY LEU GLU LYS SEQRES 9 B 143 VAL ALA TYR VAL TYR LYS GLY ASN ASN THR HIS GLU GLN SEQRES 10 B 143 LEU LEU ARG LYS ALA GLU ALA GLN ALA LYS LYS GLU LYS SEQRES 11 B 143 LEU ASN ILE TRP SER GLU ASP ASN ALA ASP SER GLY GLN HET THP A 201 25 HET CA A 202 1 HET THP B 201 25 HET CA B 202 1 HETNAM THP THYMIDINE-3',5'-DIPHOSPHATE HETNAM CA CALCIUM ION FORMUL 3 THP 2(C10 H16 N2 O11 P2) FORMUL 4 CA 2(CA 2+) FORMUL 7 HOH *290(H2 O) HELIX 1 1 TYR A 54 ALA A 69 1 16 HELIX 2 2 VAL A 99 GLN A 106 1 8 HELIX 3 3 TYR A 115 ASN A 119 5 5 HELIX 4 4 HIS A 121 GLU A 135 1 15 HELIX 5 5 LEU A 137 SER A 141 5 5 HELIX 6 6 TYR B 54 ALA B 69 1 16 HELIX 7 7 VAL B 99 GLN B 106 1 8 HELIX 8 8 HIS B 121 GLU B 135 1 15 HELIX 9 9 LEU B 137 SER B 141 5 5 SHEET 1 A 7 LYS A 97 MET A 98 0 SHEET 2 A 7 GLY A 88 ALA A 94 -1 N ALA A 94 O LYS A 97 SHEET 3 A 7 ILE A 72 PHE A 76 -1 N GLU A 75 O TYR A 91 SHEET 4 A 7 GLU A 10 ASP A 19 -1 N GLU A 10 O VAL A 74 SHEET 5 A 7 THR A 22 TYR A 27 -1 O MET A 26 N THR A 13 SHEET 6 A 7 GLN A 30 LEU A 36 -1 O PHE A 34 N VAL A 23 SHEET 7 A 7 GLY A 88 ALA A 94 1 O GLY A 88 N ARG A 35 SHEET 1 B 2 VAL A 39 ASP A 40 0 SHEET 2 B 2 LYS A 110 VAL A 111 -1 O LYS A 110 N ASP A 40 SHEET 1 C 7 LYS B 97 MET B 98 0 SHEET 2 C 7 GLY B 88 ALA B 94 -1 N ALA B 94 O LYS B 97 SHEET 3 C 7 ILE B 72 PHE B 76 -1 N GLU B 73 O TYR B 93 SHEET 4 C 7 LYS B 9 ALA B 17 -1 N GLU B 10 O VAL B 74 SHEET 5 C 7 THR B 22 TYR B 27 -1 O MET B 26 N THR B 13 SHEET 6 C 7 GLN B 30 LEU B 36 -1 O PHE B 34 N VAL B 23 SHEET 7 C 7 GLY B 88 ALA B 94 1 O GLY B 88 N ARG B 35 SHEET 1 D 2 VAL B 39 ASP B 40 0 SHEET 2 D 2 LYS B 110 VAL B 111 -1 O LYS B 110 N ASP B 40 LINK OD2 ASP A 19 CA CA A 202 1555 1555 2.39 LINK OD1 ASP A 19 CA CA A 202 1555 1555 2.91 LINK OD1 ASP A 21 CA CA A 202 1555 1555 2.39 LINK CA CA A 202 O HOH A 307 1555 1555 2.38 LINK CA CA A 202 O HOH A 310 1555 1555 2.39 LINK CA CA A 202 O HOH A 312 1555 1555 2.36 LINK CA CA A 202 O HOH A 370 1555 1555 2.31 LINK OD2 ASP B 19 CA CA B 202 1555 1555 2.35 LINK OD1 ASP B 19 CA CA B 202 1555 1555 2.86 LINK OD1 ASP B 21 CA CA B 202 1555 1555 2.39 LINK CA CA B 202 O HOH B 304 1555 1555 2.38 LINK CA CA B 202 O HOH B 314 1555 1555 2.39 LINK CA CA B 202 O HOH B 322 1555 1555 2.31 LINK CA CA B 202 O HOH B 347 1555 1555 2.32 SITE 1 AC1 19 ALA A 1 ARG A 35 ASP A 40 LYS A 84 SITE 2 AC1 19 TYR A 85 ARG A 87 LEU A 89 TYR A 113 SITE 3 AC1 19 HOH A 307 HOH A 310 HOH A 313 HOH A 314 SITE 4 AC1 19 HOH A 315 HOH A 319 HOH A 341 HOH A 348 SITE 5 AC1 19 HOH A 383 HOH A 436 ARG B 105 SITE 1 AC2 6 ASP A 19 ASP A 21 HOH A 307 HOH A 310 SITE 2 AC2 6 HOH A 312 HOH A 370 SITE 1 AC3 20 ARG A 105 ARG B 35 ASP B 40 LYS B 84 SITE 2 AC3 20 TYR B 85 ARG B 87 LEU B 89 TYR B 113 SITE 3 AC3 20 HOH B 303 HOH B 308 HOH B 309 HOH B 314 SITE 4 AC3 20 HOH B 320 HOH B 322 HOH B 325 HOH B 345 SITE 5 AC3 20 HOH B 353 HOH B 384 HOH B 385 HOH B 395 SITE 1 AC4 6 ASP B 19 ASP B 21 HOH B 304 HOH B 314 SITE 2 AC4 6 HOH B 322 HOH B 347 CRYST1 47.145 54.159 108.125 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021211 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018464 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009249 0.00000