HEADER OXIDOREDUCTASE 23-JAN-14 4OL9 TITLE CRYSTAL STRUCTURE OF PUTATIVE 2-DEHYDROPANTOATE 2-REDUCTASE PANE FROM TITLE 2 MYCOBACTERIUM TUBERCULOSIS COMPLEXED WITH NADP AND OXAMATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE 2-DEHYDROPANTOATE 2-REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MYTUD.18678.A.B1; COMPND 5 SYNONYM: KETOPANTOATE REDUCTASE, KPA REDUCTASE, KPR; COMPND 6 EC: 1.1.1.169; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: RV2573, MT2649, MTCY227.28C; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL GENOMICS, NIAID, NATIONAL INSTITUTE OF ALLERGY AND KEYWDS 2 INFECTIOUS DISEASES, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 3 INFECTIOUS DISEASE, SSGCID, KETOPANTOATE REDUCTASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE,SEATTLE AUTHOR 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 20-SEP-23 4OL9 1 REMARK SEQADV REVDAT 2 22-NOV-17 4OL9 1 REMARK REVDAT 1 26-FEB-14 4OL9 0 JRNL AUTH D.M.DRANOW,A.K.WERNIMONT,A.ABENDROTH,P.G.PIERCE,J.BULLEN, JRNL AUTH 2 T.E.EDWARDS,D.LORIMER, JRNL AUTH 3 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE 2-DEHYDROPANTOATE 2-REDUCTASE JRNL TITL 2 PANE FROM MYCOBACTERIUM TUBERCULOSIS COMPLEXED WITH NADP AND JRNL TITL 3 OXAMATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 29066 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.146 REMARK 3 FREE R VALUE : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1475 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2017 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.1940 REMARK 3 BIN FREE R VALUE SET COUNT : 123 REMARK 3 BIN FREE R VALUE : 0.2370 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2170 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 65 REMARK 3 SOLVENT ATOMS : 283 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.39 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.60000 REMARK 3 B22 (A**2) : -1.04000 REMARK 3 B33 (A**2) : 0.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.105 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.101 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.066 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.973 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2315 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2236 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3181 ; 1.496 ; 2.001 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5111 ; 0.788 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 304 ; 5.110 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 85 ;29.657 ;22.353 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 333 ;11.447 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;19.879 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 377 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2646 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 505 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1208 ; 0.822 ; 1.123 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1206 ; 0.822 ; 1.121 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1514 ; 1.385 ; 1.676 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 87 REMARK 3 ORIGIN FOR THE GROUP (A): 56.7262 16.2592 -11.3791 REMARK 3 T TENSOR REMARK 3 T11: 0.0479 T22: 0.0625 REMARK 3 T33: 0.0419 T12: -0.0166 REMARK 3 T13: 0.0191 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 1.2968 L22: 1.2013 REMARK 3 L33: 1.2408 L12: -0.1548 REMARK 3 L13: -0.1762 L23: -0.2681 REMARK 3 S TENSOR REMARK 3 S11: -0.0213 S12: 0.0831 S13: -0.0433 REMARK 3 S21: -0.0804 S22: -0.0024 S23: -0.0861 REMARK 3 S31: -0.0078 S32: 0.0780 S33: 0.0237 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 88 A 140 REMARK 3 ORIGIN FOR THE GROUP (A): 54.1524 15.2740 -1.2615 REMARK 3 T TENSOR REMARK 3 T11: 0.0513 T22: 0.0417 REMARK 3 T33: 0.0587 T12: -0.0088 REMARK 3 T13: -0.0046 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 1.2911 L22: 0.5445 REMARK 3 L33: 1.1429 L12: -0.0555 REMARK 3 L13: 0.0775 L23: -0.1684 REMARK 3 S TENSOR REMARK 3 S11: -0.0338 S12: -0.0567 S13: -0.0648 REMARK 3 S21: 0.0078 S22: 0.0076 S23: -0.0785 REMARK 3 S31: 0.0176 S32: 0.0111 S33: 0.0262 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 141 A 225 REMARK 3 ORIGIN FOR THE GROUP (A): 43.2804 17.0234 9.1950 REMARK 3 T TENSOR REMARK 3 T11: 0.0718 T22: 0.0688 REMARK 3 T33: 0.0530 T12: -0.0119 REMARK 3 T13: -0.0085 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.4653 L22: 0.4228 REMARK 3 L33: 0.3279 L12: 0.2299 REMARK 3 L13: -0.1891 L23: -0.2067 REMARK 3 S TENSOR REMARK 3 S11: 0.0206 S12: -0.0744 S13: 0.0087 REMARK 3 S21: 0.0037 S22: -0.0384 S23: 0.0212 REMARK 3 S31: -0.0537 S32: 0.0417 S33: 0.0178 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 226 A 295 REMARK 3 ORIGIN FOR THE GROUP (A): 39.7897 6.7801 7.5880 REMARK 3 T TENSOR REMARK 3 T11: 0.0545 T22: 0.0571 REMARK 3 T33: 0.0496 T12: -0.0102 REMARK 3 T13: -0.0030 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 0.6499 L22: 0.7226 REMARK 3 L33: 0.7325 L12: 0.0129 REMARK 3 L13: 0.0568 L23: 0.1217 REMARK 3 S TENSOR REMARK 3 S11: -0.0416 S12: 0.0023 S13: -0.0556 REMARK 3 S21: 0.0133 S22: -0.0006 S23: -0.0602 REMARK 3 S31: 0.0050 S32: 0.0098 S33: 0.0422 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4OL9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000084634. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29066 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 55.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.53700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.410 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: 3G17 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN INCUBATED WITH 4MM NADP FOR REMARK 280 ~5MIN, THEN ADDED 1 TO 1 WITH MORPHEUS(G5): 10% PEG-20,0000, 20% REMARK 280 PEG-MME-550, 0.1M MOPS/HEPES-NA, PH=7.5, 0.02M EACH SODIUM REMARK 280 FORMATE, AMMONIUM ACETATE, TRISODIUM CITRATE, SODIUM POTASSIUM L- REMARK 280 TARTARATE, SODIUM OXAMATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 32.29500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.26000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.29500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.26000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 64.59000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 674 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -8 REMARK 465 ALA A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A -1 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 60 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 92 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 139 CG CD OE1 OE2 REMARK 470 ARG A 223 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 1 -64.33 -98.78 REMARK 500 ASP A 90 -168.80 -129.19 REMARK 500 GLU A 258 42.52 -76.54 REMARK 500 ASN A 263 -44.40 -134.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXM A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-MYTUD.18678.A RELATED DB: TARGETTRACK DBREF 4OL9 A 2 295 UNP Q50648 PANE_MYCTU 2 295 SEQADV 4OL9 MET A -8 UNP Q50648 EXPRESSION TAG SEQADV 4OL9 ALA A -7 UNP Q50648 EXPRESSION TAG SEQADV 4OL9 HIS A -6 UNP Q50648 EXPRESSION TAG SEQADV 4OL9 HIS A -5 UNP Q50648 EXPRESSION TAG SEQADV 4OL9 HIS A -4 UNP Q50648 EXPRESSION TAG SEQADV 4OL9 HIS A -3 UNP Q50648 EXPRESSION TAG SEQADV 4OL9 HIS A -2 UNP Q50648 EXPRESSION TAG SEQADV 4OL9 HIS A -1 UNP Q50648 EXPRESSION TAG SEQADV 4OL9 MET A 0 UNP Q50648 EXPRESSION TAG SEQADV 4OL9 ILE A 1 UNP Q50648 EXPRESSION TAG SEQRES 1 A 304 MET ALA HIS HIS HIS HIS HIS HIS MET ILE ALA THR GLY SEQRES 2 A 304 ILE ALA LEU VAL GLY PRO GLY ALA VAL GLY THR THR VAL SEQRES 3 A 304 ALA ALA LEU LEU HIS LYS ALA GLY TYR SER PRO LEU LEU SEQRES 4 A 304 CYS GLY HIS THR PRO ARG ALA GLY ILE GLU LEU ARG ARG SEQRES 5 A 304 ASP GLY ALA ASP PRO ILE VAL VAL PRO GLY PRO VAL HIS SEQRES 6 A 304 THR SER PRO ARG GLU VAL ALA GLY PRO VAL ASP VAL LEU SEQRES 7 A 304 ILE LEU ALA VAL LYS ALA THR GLN ASN ASP ALA ALA ARG SEQRES 8 A 304 PRO TRP LEU THR ARG LEU CYS ASP GLU ARG THR VAL VAL SEQRES 9 A 304 ALA VAL LEU GLN ASN GLY VAL GLU GLN VAL GLU GLN VAL SEQRES 10 A 304 GLN PRO HIS CYS PRO SER SER ALA VAL VAL PRO ALA ILE SEQRES 11 A 304 VAL TRP CYS SER ALA GLU THR GLN PRO GLN GLY TRP VAL SEQRES 12 A 304 ARG LEU ARG GLY GLU ALA ALA LEU VAL VAL PRO THR GLY SEQRES 13 A 304 PRO ALA ALA GLU GLN PHE ALA GLY LEU LEU ARG GLY ALA SEQRES 14 A 304 GLY ALA THR VAL ASP CYS ASP PRO ASP PHE THR THR ALA SEQRES 15 A 304 ALA TRP ARG LYS LEU LEU VAL ASN ALA LEU ALA GLY PHE SEQRES 16 A 304 MET VAL LEU SER GLY ARG ARG SER ALA MET PHE ARG ARG SEQRES 17 A 304 ASP ASP VAL ALA ALA LEU SER ARG ARG TYR VAL ALA GLU SEQRES 18 A 304 CYS LEU ALA VAL ALA ARG ALA GLU GLY ALA ARG LEU ASP SEQRES 19 A 304 ASP ASP VAL VAL ASP GLU VAL VAL ARG LEU VAL ARG SER SEQRES 20 A 304 ALA PRO GLN ASP MET GLY THR SER MET LEU ALA ASP ARG SEQRES 21 A 304 ALA ALA HIS ARG PRO LEU GLU TRP ASP LEU ARG ASN GLY SEQRES 22 A 304 VAL ILE VAL ARG LYS ALA ARG ALA HIS GLY LEU ALA THR SEQRES 23 A 304 PRO ILE SER ASP VAL LEU VAL PRO LEU LEU ALA ALA ALA SEQRES 24 A 304 SER ASP GLY PRO GLY HET NAP A 301 48 HET OXM A 302 6 HET ACT A 303 4 HET CL A 304 1 HET GOL A 305 6 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM OXM OXAMIC ACID HETNAM ACT ACETATE ION HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NAP C21 H28 N7 O17 P3 FORMUL 3 OXM C2 H3 N O3 FORMUL 4 ACT C2 H3 O2 1- FORMUL 5 CL CL 1- FORMUL 6 GOL C3 H8 O3 FORMUL 7 HOH *283(H2 O) HELIX 1 1 GLY A 11 GLY A 25 1 15 HELIX 2 2 SER A 58 VAL A 62 5 5 HELIX 3 3 LYS A 74 THR A 76 5 3 HELIX 4 4 GLN A 77 CYS A 89 1 13 HELIX 5 5 GLU A 103 GLN A 109 1 7 HELIX 6 6 PRO A 110 CYS A 112 5 3 HELIX 7 7 GLY A 147 ALA A 160 1 14 HELIX 8 8 ASP A 169 GLY A 191 1 23 HELIX 9 9 ARG A 193 ARG A 198 5 6 HELIX 10 10 ARG A 199 GLU A 220 1 22 HELIX 11 11 ASP A 227 ALA A 239 1 13 HELIX 12 12 THR A 245 ALA A 253 1 9 HELIX 13 13 GLU A 258 ASN A 263 1 6 HELIX 14 14 ASN A 263 ARG A 271 1 9 HELIX 15 15 ALA A 272 GLY A 274 5 3 HELIX 16 16 THR A 277 GLY A 293 1 17 SHEET 1 A 7 LEU A 29 CYS A 31 0 SHEET 2 A 7 ILE A 5 VAL A 8 1 N LEU A 7 O LEU A 29 SHEET 3 A 7 VAL A 68 LEU A 71 1 O ILE A 70 N ALA A 6 SHEET 4 A 7 VAL A 94 LEU A 98 1 O ALA A 96 N LEU A 71 SHEET 5 A 7 ALA A 116 TRP A 123 1 O VAL A 118 N VAL A 95 SHEET 6 A 7 ALA A 141 VAL A 144 -1 O ALA A 141 N TRP A 123 SHEET 7 A 7 THR A 163 CYS A 166 1 O ASP A 165 N VAL A 144 SHEET 1 B 4 ILE A 49 PRO A 52 0 SHEET 2 B 4 GLY A 38 ARG A 43 -1 N ILE A 39 O VAL A 51 SHEET 3 B 4 VAL A 134 LEU A 136 1 O VAL A 134 N ARG A 42 SHEET 4 B 4 ALA A 126 THR A 128 -1 N GLU A 127 O ARG A 135 CISPEP 1 GLY A 53 PRO A 54 0 4.00 CISPEP 2 GLY A 64 PRO A 65 0 -4.16 CISPEP 3 GLY A 293 PRO A 294 0 3.29 SITE 1 AC1 35 GLY A 9 PRO A 10 GLY A 11 ALA A 12 SITE 2 AC1 35 VAL A 13 CYS A 31 GLY A 32 HIS A 33 SITE 3 AC1 35 THR A 34 ALA A 72 VAL A 73 LYS A 74 SITE 4 AC1 35 GLN A 77 ALA A 80 TRP A 84 LEU A 98 SITE 5 AC1 35 GLN A 99 ASN A 100 VAL A 122 CYS A 124 SITE 6 AC1 35 ALA A 126 SER A 246 ARG A 255 GLU A 258 SITE 7 AC1 35 OXM A 302 ACT A 303 HOH A 409 HOH A 444 SITE 8 AC1 35 HOH A 503 HOH A 516 HOH A 579 HOH A 580 SITE 9 AC1 35 HOH A 619 HOH A 620 HOH A 659 SITE 1 AC2 9 ASN A 100 CYS A 124 LYS A 177 ASN A 181 SITE 2 AC2 9 THR A 245 SER A 246 ARG A 262 NAP A 301 SITE 3 AC2 9 HOH A 580 SITE 1 AC3 5 PRO A 10 THR A 34 VAL A 55 NAP A 301 SITE 2 AC3 5 HOH A 620 SITE 1 AC4 3 ARG A 158 ARG A 198 GLN A 241 SITE 1 AC5 4 ARG A 199 ASP A 200 ASP A 201 HOH A 590 CRYST1 64.590 108.520 47.290 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015482 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009215 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021146 0.00000