HEADER HYDROLASE/RNA 23-JAN-14 4OLB TITLE CRYSTAL STRUCTURE OF HUMAN ARGONAUTE2 BOUND TO TRYPTOPHAN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN ARGONAUTE-2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ARGONAUTE2, HAGO2, EUKARYOTIC TRANSLATION INITIATION FACTOR COMPND 5 2C 2, EIF-2C 2, EIF2C 2, PAZ PIWI DOMAIN PROTEIN, PPD, PROTEIN COMPND 6 SLICER; COMPND 7 EC: 3.1.26.-; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: 5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*U)-3'; COMPND 12 CHAIN: B; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EIF2C2, AGO2; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 15 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: SF9 KEYWDS RNA-BINDING PROTEIN, RNA INTERFERENCE, PROTEIN-RNA COMPLEX, AGO, KEYWDS 2 HYDROLASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.T.SCHIRLE,I.J.MACRAE REVDAT 2 20-SEP-23 4OLB 1 REMARK SEQADV REVDAT 1 05-FEB-14 4OLB 0 SPRSDE 05-FEB-14 4OLB 4EI3 JRNL AUTH N.T.SCHIRLE,I.J.MACRAE JRNL TITL THE CRYSTAL STRUCTURE OF HUMAN ARGONAUTE2. JRNL REF SCIENCE V. 336 1037 2012 JRNL REFN ISSN 0036-8075 JRNL PMID 22539551 JRNL DOI 10.1126/SCIENCE.1221551 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 18863 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 955 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.0483 - 5.5420 0.98 2601 146 0.1979 0.2414 REMARK 3 2 5.5420 - 4.4007 0.99 2600 138 0.1787 0.2016 REMARK 3 3 4.4007 - 3.8450 0.98 2545 150 0.1918 0.2313 REMARK 3 4 3.8450 - 3.4937 0.99 2583 124 0.2090 0.2542 REMARK 3 5 3.4937 - 3.2434 0.97 2566 113 0.2498 0.2818 REMARK 3 6 3.2434 - 3.0523 0.99 2554 153 0.2538 0.3290 REMARK 3 7 3.0523 - 2.8990 0.94 2459 131 0.2868 0.3190 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 6769 REMARK 3 ANGLE : 0.787 9197 REMARK 3 CHIRALITY : 0.053 1030 REMARK 3 PLANARITY : 0.003 1145 REMARK 3 DIHEDRAL : 14.531 2573 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -24.9963 12.6411 39.5314 REMARK 3 T TENSOR REMARK 3 T11: 0.2909 T22: 0.2855 REMARK 3 T33: 0.2761 T12: 0.0448 REMARK 3 T13: 0.0092 T23: 0.0399 REMARK 3 L TENSOR REMARK 3 L11: 0.8345 L22: 0.4723 REMARK 3 L33: 0.5868 L12: 0.0679 REMARK 3 L13: 0.1492 L23: 0.2998 REMARK 3 S TENSOR REMARK 3 S11: -0.0055 S12: 0.0243 S13: 0.1089 REMARK 3 S21: -0.0748 S22: -0.0474 S23: -0.0136 REMARK 3 S31: 0.0920 S32: 0.1137 S33: 0.0477 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4OLB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000084636. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97945 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19005 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.893 REMARK 200 RESOLUTION RANGE LOW (A) : 65.347 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.05 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.28600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 4OLA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG3350, 12% ISOPROPANOL, REMARK 280 SATURATED L-TRYPTOPHAN, 0.1 M TRIS, PH 9.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 53.37350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 TYR A 2 REMARK 465 SER A 3 REMARK 465 GLY A 4 REMARK 465 ALA A 5 REMARK 465 GLY A 6 REMARK 465 PRO A 7 REMARK 465 ALA A 8 REMARK 465 LEU A 9 REMARK 465 ALA A 10 REMARK 465 PRO A 11 REMARK 465 PRO A 12 REMARK 465 ALA A 13 REMARK 465 PRO A 14 REMARK 465 PRO A 15 REMARK 465 PRO A 16 REMARK 465 PRO A 17 REMARK 465 ILE A 18 REMARK 465 GLN A 19 REMARK 465 GLY A 20 REMARK 465 TYR A 21 REMARK 465 PRO A 120 REMARK 465 GLY A 121 REMARK 465 GLU A 122 REMARK 465 GLY A 123 REMARK 465 LYS A 124 REMARK 465 ASP A 125 REMARK 465 PRO A 152 REMARK 465 SER A 153 REMARK 465 GLU A 186 REMARK 465 GLY A 187 REMARK 465 CYS A 188 REMARK 465 GLU A 245 REMARK 465 GLN A 246 REMARK 465 CYS A 272 REMARK 465 GLY A 273 REMARK 465 GLN A 274 REMARK 465 MET A 275 REMARK 465 GLN A 334 REMARK 465 LYS A 335 REMARK 465 ALA A 603 REMARK 465 GLY A 604 REMARK 465 ASP A 605 REMARK 465 GLY A 606 REMARK 465 ASP A 819 REMARK 465 LYS A 820 REMARK 465 GLU A 821 REMARK 465 HIS A 822 REMARK 465 ASP A 823 REMARK 465 SER A 824 REMARK 465 ALA A 825 REMARK 465 GLU A 826 REMARK 465 GLY A 827 REMARK 465 SER A 828 REMARK 465 HIS A 829 REMARK 465 THR A 830 REMARK 465 SER A 831 REMARK 465 GLY A 832 REMARK 465 GLN A 833 REMARK 465 SER A 834 REMARK 465 ASN A 835 REMARK 465 GLY A 836 REMARK 465 ARG A 837 REMARK 465 ASP A 838 REMARK 465 HIS A 839 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 A B 8 N9 C8 N7 C5 C6 N6 N1 REMARK 470 A B 8 C2 N3 C4 REMARK 470 A B 9 C5' C4' O4' C3' O3' C2' O2' REMARK 470 A B 9 C1' N9 C8 N7 C5 C6 N6 REMARK 470 A B 9 N1 C2 N3 C4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HIS A 711 O HOH A 1005 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 65 OD1 ASP A 851 2546 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 A B 1 P A B 1 OP3 -0.128 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 280 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 23 -72.65 -143.45 REMARK 500 ASN A 43 41.63 -75.01 REMARK 500 ILE A 86 -61.87 -126.40 REMARK 500 ARG A 97 -83.78 -122.15 REMARK 500 PRO A 107 47.42 -70.88 REMARK 500 ARG A 110 -45.69 -174.68 REMARK 500 ARG A 150 85.34 -8.96 REMARK 500 PRO A 155 99.36 -62.15 REMARK 500 TRP A 211 -19.13 70.29 REMARK 500 LYS A 248 143.60 -175.03 REMARK 500 PRO A 326 -178.54 -69.58 REMARK 500 ASN A 439 39.81 29.03 REMARK 500 CYS A 492 107.15 -162.24 REMARK 500 THR A 526 143.21 -172.92 REMARK 500 VAL A 539 -71.51 -91.26 REMARK 500 ASN A 623 -60.53 -129.94 REMARK 500 ASP A 641 34.59 -91.95 REMARK 500 LYS A 739 -49.90 66.18 REMARK 500 ALA A 845 0.12 -69.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 TRP A 901 REMARK 610 TRP A 902 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRP A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRP A 902 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4OLA RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE RNA STRAND BETWEEN RESIDUES A9 AND U21 IS DISORDERED. BOTH THE REMARK 999 SEQUENCE AND LENGTH OF THE DISORDERED REGION ARE UNKNOWN. DBREF 4OLB A 1 859 UNP Q9UKV8 AGO2_HUMAN 1 859 DBREF 4OLB B 1 21 PDB 4OLB 4OLB 1 21 SEQADV 4OLB ASP A 387 UNP Q9UKV8 SER 387 ENGINEERED MUTATION SEQRES 1 A 859 MET TYR SER GLY ALA GLY PRO ALA LEU ALA PRO PRO ALA SEQRES 2 A 859 PRO PRO PRO PRO ILE GLN GLY TYR ALA PHE LYS PRO PRO SEQRES 3 A 859 PRO ARG PRO ASP PHE GLY THR SER GLY ARG THR ILE LYS SEQRES 4 A 859 LEU GLN ALA ASN PHE PHE GLU MET ASP ILE PRO LYS ILE SEQRES 5 A 859 ASP ILE TYR HIS TYR GLU LEU ASP ILE LYS PRO GLU LYS SEQRES 6 A 859 CYS PRO ARG ARG VAL ASN ARG GLU ILE VAL GLU HIS MET SEQRES 7 A 859 VAL GLN HIS PHE LYS THR GLN ILE PHE GLY ASP ARG LYS SEQRES 8 A 859 PRO VAL PHE ASP GLY ARG LYS ASN LEU TYR THR ALA MET SEQRES 9 A 859 PRO LEU PRO ILE GLY ARG ASP LYS VAL GLU LEU GLU VAL SEQRES 10 A 859 THR LEU PRO GLY GLU GLY LYS ASP ARG ILE PHE LYS VAL SEQRES 11 A 859 SER ILE LYS TRP VAL SER CYS VAL SER LEU GLN ALA LEU SEQRES 12 A 859 HIS ASP ALA LEU SER GLY ARG LEU PRO SER VAL PRO PHE SEQRES 13 A 859 GLU THR ILE GLN ALA LEU ASP VAL VAL MET ARG HIS LEU SEQRES 14 A 859 PRO SER MET ARG TYR THR PRO VAL GLY ARG SER PHE PHE SEQRES 15 A 859 THR ALA SER GLU GLY CYS SER ASN PRO LEU GLY GLY GLY SEQRES 16 A 859 ARG GLU VAL TRP PHE GLY PHE HIS GLN SER VAL ARG PRO SEQRES 17 A 859 SER LEU TRP LYS MET MET LEU ASN ILE ASP VAL SER ALA SEQRES 18 A 859 THR ALA PHE TYR LYS ALA GLN PRO VAL ILE GLU PHE VAL SEQRES 19 A 859 CYS GLU VAL LEU ASP PHE LYS SER ILE GLU GLU GLN GLN SEQRES 20 A 859 LYS PRO LEU THR ASP SER GLN ARG VAL LYS PHE THR LYS SEQRES 21 A 859 GLU ILE LYS GLY LEU LYS VAL GLU ILE THR HIS CYS GLY SEQRES 22 A 859 GLN MET LYS ARG LYS TYR ARG VAL CYS ASN VAL THR ARG SEQRES 23 A 859 ARG PRO ALA SER HIS GLN THR PHE PRO LEU GLN GLN GLU SEQRES 24 A 859 SER GLY GLN THR VAL GLU CYS THR VAL ALA GLN TYR PHE SEQRES 25 A 859 LYS ASP ARG HIS LYS LEU VAL LEU ARG TYR PRO HIS LEU SEQRES 26 A 859 PRO CYS LEU GLN VAL GLY GLN GLU GLN LYS HIS THR TYR SEQRES 27 A 859 LEU PRO LEU GLU VAL CYS ASN ILE VAL ALA GLY GLN ARG SEQRES 28 A 859 CYS ILE LYS LYS LEU THR ASP ASN GLN THR SER THR MET SEQRES 29 A 859 ILE ARG ALA THR ALA ARG SER ALA PRO ASP ARG GLN GLU SEQRES 30 A 859 GLU ILE SER LYS LEU MET ARG SER ALA ASP PHE ASN THR SEQRES 31 A 859 ASP PRO TYR VAL ARG GLU PHE GLY ILE MET VAL LYS ASP SEQRES 32 A 859 GLU MET THR ASP VAL THR GLY ARG VAL LEU GLN PRO PRO SEQRES 33 A 859 SER ILE LEU TYR GLY GLY ARG ASN LYS ALA ILE ALA THR SEQRES 34 A 859 PRO VAL GLN GLY VAL TRP ASP MET ARG ASN LYS GLN PHE SEQRES 35 A 859 HIS THR GLY ILE GLU ILE LYS VAL TRP ALA ILE ALA CYS SEQRES 36 A 859 PHE ALA PRO GLN ARG GLN CYS THR GLU VAL HIS LEU LYS SEQRES 37 A 859 SER PHE THR GLU GLN LEU ARG LYS ILE SER ARG ASP ALA SEQRES 38 A 859 GLY MET PRO ILE GLN GLY GLN PRO CYS PHE CYS LYS TYR SEQRES 39 A 859 ALA GLN GLY ALA ASP SER VAL GLU PRO MET PHE ARG HIS SEQRES 40 A 859 LEU LYS ASN THR TYR ALA GLY LEU GLN LEU VAL VAL VAL SEQRES 41 A 859 ILE LEU PRO GLY LYS THR PRO VAL TYR ALA GLU VAL LYS SEQRES 42 A 859 ARG VAL GLY ASP THR VAL LEU GLY MET ALA THR GLN CYS SEQRES 43 A 859 VAL GLN MET LYS ASN VAL GLN ARG THR THR PRO GLN THR SEQRES 44 A 859 LEU SER ASN LEU CYS LEU LYS ILE ASN VAL LYS LEU GLY SEQRES 45 A 859 GLY VAL ASN ASN ILE LEU LEU PRO GLN GLY ARG PRO PRO SEQRES 46 A 859 VAL PHE GLN GLN PRO VAL ILE PHE LEU GLY ALA ASP VAL SEQRES 47 A 859 THR HIS PRO PRO ALA GLY ASP GLY LYS LYS PRO SER ILE SEQRES 48 A 859 ALA ALA VAL VAL GLY SER MET ASP ALA HIS PRO ASN ARG SEQRES 49 A 859 TYR CYS ALA THR VAL ARG VAL GLN GLN HIS ARG GLN GLU SEQRES 50 A 859 ILE ILE GLN ASP LEU ALA ALA MET VAL ARG GLU LEU LEU SEQRES 51 A 859 ILE GLN PHE TYR LYS SER THR ARG PHE LYS PRO THR ARG SEQRES 52 A 859 ILE ILE PHE TYR ARG ASP GLY VAL SER GLU GLY GLN PHE SEQRES 53 A 859 GLN GLN VAL LEU HIS HIS GLU LEU LEU ALA ILE ARG GLU SEQRES 54 A 859 ALA CYS ILE LYS LEU GLU LYS ASP TYR GLN PRO GLY ILE SEQRES 55 A 859 THR PHE ILE VAL VAL GLN LYS ARG HIS HIS THR ARG LEU SEQRES 56 A 859 PHE CYS THR ASP LYS ASN GLU ARG VAL GLY LYS SER GLY SEQRES 57 A 859 ASN ILE PRO ALA GLY THR THR VAL ASP THR LYS ILE THR SEQRES 58 A 859 HIS PRO THR GLU PHE ASP PHE TYR LEU CYS SER HIS ALA SEQRES 59 A 859 GLY ILE GLN GLY THR SER ARG PRO SER HIS TYR HIS VAL SEQRES 60 A 859 LEU TRP ASP ASP ASN ARG PHE SER SER ASP GLU LEU GLN SEQRES 61 A 859 ILE LEU THR TYR GLN LEU CYS HIS THR TYR VAL ARG CYS SEQRES 62 A 859 THR ARG SER VAL SER ILE PRO ALA PRO ALA TYR TYR ALA SEQRES 63 A 859 HIS LEU VAL ALA PHE ARG ALA ARG TYR HIS LEU VAL ASP SEQRES 64 A 859 LYS GLU HIS ASP SER ALA GLU GLY SER HIS THR SER GLY SEQRES 65 A 859 GLN SER ASN GLY ARG ASP HIS GLN ALA LEU ALA LYS ALA SEQRES 66 A 859 VAL GLN VAL HIS GLN ASP THR LEU ARG THR MET TYR PHE SEQRES 67 A 859 ALA SEQRES 1 B 10 A A A A A A A A A U HET TRP A 901 14 HET TRP A 902 14 HETNAM TRP TRYPTOPHAN FORMUL 3 TRP 2(C11 H12 N2 O2) FORMUL 5 HOH *7(H2 O) HELIX 1 1 PRO A 67 PHE A 82 1 16 HELIX 2 2 LEU A 140 GLY A 149 1 10 HELIX 3 3 PRO A 155 ARG A 167 1 13 HELIX 4 4 LEU A 169 TYR A 174 1 6 HELIX 5 5 PRO A 229 ASP A 239 1 11 HELIX 6 6 THR A 251 LYS A 263 1 13 HELIX 7 7 VAL A 308 ARG A 315 1 8 HELIX 8 8 THR A 357 ALA A 369 1 13 HELIX 9 9 SER A 371 ASP A 387 1 17 HELIX 10 10 PHE A 388 THR A 390 5 3 HELIX 11 11 ASP A 391 PHE A 397 1 7 HELIX 12 12 THR A 463 GLY A 482 1 20 HELIX 13 13 GLY A 497 ASP A 499 5 3 HELIX 14 14 SER A 500 TYR A 512 1 13 HELIX 15 15 PRO A 527 THR A 538 1 12 HELIX 16 16 MET A 549 ARG A 554 1 6 HELIX 17 17 THR A 556 LEU A 571 1 16 HELIX 18 18 PRO A 584 GLN A 589 5 6 HELIX 19 19 ASP A 641 ARG A 658 1 18 HELIX 20 20 SER A 672 GLY A 674 5 3 HELIX 21 21 GLN A 675 GLU A 695 1 21 HELIX 22 22 ASP A 719 ARG A 723 5 5 HELIX 23 23 SER A 775 CYS A 787 1 13 HELIX 24 24 PRO A 800 LEU A 817 1 18 HELIX 25 25 HIS A 849 ARG A 854 1 6 SHEET 1 A11 TYR A 625 GLN A 632 0 SHEET 2 A11 SER A 610 SER A 617 -1 N VAL A 614 O THR A 628 SHEET 3 A11 VAL A 591 THR A 599 -1 N ASP A 597 O ALA A 613 SHEET 4 A11 ARG A 663 ASP A 669 1 O ILE A 665 N LEU A 594 SHEET 5 A11 GLY A 701 GLN A 708 1 O ILE A 705 N ARG A 668 SHEET 6 A11 SER A 763 ASP A 770 -1 O HIS A 764 N GLN A 708 SHEET 7 A11 PHE A 746 CYS A 751 -1 N PHE A 746 O VAL A 767 SHEET 8 A11 THR A 734 VAL A 736 -1 N VAL A 736 O TYR A 749 SHEET 9 A11 THR A 406 VAL A 412 -1 N ARG A 411 O THR A 735 SHEET 10 A11 ARG A 36 ALA A 42 -1 N LEU A 40 O VAL A 408 SHEET 11 A11 LEU A 715 CYS A 717 -1 O PHE A 716 N GLN A 41 SHEET 1 B 5 THR A 175 VAL A 177 0 SHEET 2 B 5 SER A 180 THR A 183 -1 O PHE A 182 N THR A 175 SHEET 3 B 5 ARG A 196 PRO A 208 -1 O PHE A 202 N PHE A 181 SHEET 4 B 5 MET A 213 TYR A 225 -1 O MET A 214 N ARG A 207 SHEET 5 B 5 GLN A 350 ARG A 351 -1 O GLN A 350 N TYR A 225 SHEET 1 C 5 PRO A 191 GLY A 193 0 SHEET 2 C 5 ARG A 196 PRO A 208 -1 O ARG A 196 N LEU A 192 SHEET 3 C 5 MET A 213 TYR A 225 -1 O MET A 214 N ARG A 207 SHEET 4 C 5 PHE A 44 ASP A 48 -1 N PHE A 45 O LEU A 215 SHEET 5 C 5 MET A 400 VAL A 401 -1 O MET A 400 N ASP A 48 SHEET 1 D 5 VAL A 93 PHE A 94 0 SHEET 2 D 5 ASN A 99 THR A 102 -1 O TYR A 101 N VAL A 93 SHEET 3 D 5 ASP A 53 LYS A 62 -1 N TYR A 57 O LEU A 100 SHEET 4 D 5 PHE A 128 SER A 139 -1 O VAL A 138 N ILE A 54 SHEET 5 D 5 VAL A 113 VAL A 117 -1 N LEU A 115 O VAL A 130 SHEET 1 E 5 THR A 337 PRO A 340 0 SHEET 2 E 5 PRO A 326 VAL A 330 -1 N LEU A 328 O LEU A 339 SHEET 3 E 5 LYS A 278 PRO A 288 -1 N ASN A 283 O GLN A 329 SHEET 4 E 5 LYS A 266 ILE A 269 -1 N VAL A 267 O TYR A 279 SHEET 5 E 5 CYS A 344 ILE A 346 -1 O ASN A 345 N GLU A 268 SHEET 1 F 2 THR A 293 GLN A 297 0 SHEET 2 F 2 THR A 303 THR A 307 -1 O VAL A 304 N LEU A 296 SHEET 1 G 3 ILE A 427 ALA A 428 0 SHEET 2 G 3 ILE A 418 LEU A 419 -1 N ILE A 418 O ALA A 428 SHEET 3 G 3 ILE A 577 LEU A 578 -1 O ILE A 577 N LEU A 419 SHEET 1 H 4 PHE A 491 TYR A 494 0 SHEET 2 H 4 TRP A 451 CYS A 455 1 N CYS A 455 O LYS A 493 SHEET 3 H 4 LEU A 517 LEU A 522 1 O ILE A 521 N ALA A 454 SHEET 4 H 4 THR A 544 GLN A 548 1 O VAL A 547 N VAL A 520 CISPEP 1 LYS A 62 PRO A 63 0 6.66 CISPEP 2 ARG A 150 LEU A 151 0 -22.47 CISPEP 3 HIS A 621 PRO A 622 0 -8.08 SITE 1 AC1 7 PHE A 587 GLN A 589 PRO A 590 VAL A 591 SITE 2 AC1 7 ALA A 620 PHE A 653 PHE A 659 SITE 1 AC2 6 LEU A 650 TYR A 654 LYS A 660 LEU A 694 SITE 2 AC2 6 GLU A 695 TYR A 698 CRYST1 63.207 106.747 68.341 90.00 107.01 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015821 0.000000 0.004839 0.00000 SCALE2 0.000000 0.009368 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015302 0.00000