HEADER LIGASE 23-JAN-14 4OLF TITLE CRYSTAL STRUCTURE OF PROLYL-TRNA SYNTHETASE (PRORS, PROLINE--TRNA TITLE 2 LIGASE)FROM PLASMODIUM FALCIPARUM IN COMPLEX WITH HALOFUGINONE AND TITLE 3 AMPPNP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROLINE--TRNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 249-746; COMPND 5 SYNONYM: PROLYL-TRNA SYNTHETASE, PRORS; COMPND 6 EC: 6.1.1.15; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 GENE: PRORS, PFL0670C; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL GENOMICS, NIAID, NATIONAL INSTITUTE OF ALLERGY AND KEYWDS 2 INFECTIOUS DISEASES, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 3 INFECTIOUS DISEASE, SSGCID, PROLYL-TRNA SYNTHETASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 20-SEP-23 4OLF 1 REMARK SEQADV REVDAT 1 15-APR-15 4OLF 0 JRNL AUTH D.M.DRANOW,T.E.EDWARDS,D.LORIMER, JRNL AUTH 2 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL TITL CRYSTAL STRUCTURE OF PROLYL-TRNA SYNTHETASE (PRORS, JRNL TITL 2 PROLINE--TRNA LIGASE)FROM PLASMODIUM FALCIPARUM IN COMPLEX JRNL TITL 3 WITH HALOFUGINONE AND AMPPNP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 27357 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1337 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1944 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.3580 REMARK 3 BIN FREE R VALUE SET COUNT : 90 REMARK 3 BIN FREE R VALUE : 0.4150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3773 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 135 REMARK 3 SOLVENT ATOMS : 8 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 68.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 74.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.51000 REMARK 3 B22 (A**2) : 0.51000 REMARK 3 B33 (A**2) : -1.64000 REMARK 3 B12 (A**2) : 0.25000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.360 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.272 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.204 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.189 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3993 ; 0.011 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3515 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5458 ; 1.482 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8067 ; 0.786 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 479 ; 6.784 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 174 ;36.236 ;24.368 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 603 ;16.301 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;17.864 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 603 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4448 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 908 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1925 ; 2.295 ; 4.571 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1924 ; 2.295 ; 4.572 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2401 ; 3.618 ; 6.857 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 251 A 335 REMARK 3 ORIGIN FOR THE GROUP (A): 28.6515 39.2158 10.7269 REMARK 3 T TENSOR REMARK 3 T11: 0.3557 T22: 0.2303 REMARK 3 T33: 0.0978 T12: 0.1549 REMARK 3 T13: -0.1483 T23: -0.0164 REMARK 3 L TENSOR REMARK 3 L11: 0.5639 L22: 1.4161 REMARK 3 L33: 1.9343 L12: 0.0838 REMARK 3 L13: 0.0019 L23: -0.4591 REMARK 3 S TENSOR REMARK 3 S11: -0.0973 S12: 0.1859 S13: 0.1721 REMARK 3 S21: 0.4348 S22: 0.1038 S23: -0.1438 REMARK 3 S31: 0.2258 S32: 0.1061 S33: -0.0065 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 336 A 688 REMARK 3 ORIGIN FOR THE GROUP (A): 21.9475 35.5767 15.8649 REMARK 3 T TENSOR REMARK 3 T11: 0.4180 T22: 0.1708 REMARK 3 T33: 0.0265 T12: 0.1704 REMARK 3 T13: -0.0663 T23: -0.0117 REMARK 3 L TENSOR REMARK 3 L11: 1.1777 L22: 0.5990 REMARK 3 L33: 1.2049 L12: -0.3029 REMARK 3 L13: 0.1211 L23: 0.1750 REMARK 3 S TENSOR REMARK 3 S11: -0.0291 S12: 0.1619 S13: 0.0397 REMARK 3 S21: 0.3402 S22: 0.0639 S23: -0.0097 REMARK 3 S31: 0.1546 S32: -0.0979 S33: -0.0348 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 689 A 746 REMARK 3 ORIGIN FOR THE GROUP (A): 17.5856 49.9244 36.8099 REMARK 3 T TENSOR REMARK 3 T11: 0.5290 T22: 0.1765 REMARK 3 T33: 0.0424 T12: 0.2318 REMARK 3 T13: -0.0265 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 2.2538 L22: 4.3529 REMARK 3 L33: 2.2815 L12: -1.7101 REMARK 3 L13: 0.3132 L23: 2.3292 REMARK 3 S TENSOR REMARK 3 S11: -0.2680 S12: -0.0398 S13: 0.3065 REMARK 3 S21: 0.3379 S22: 0.1972 S23: -0.2014 REMARK 3 S31: 0.2745 S32: 0.2366 S33: 0.0709 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4OLF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000084640. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JAN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.977408 REMARK 200 MONOCHROMATOR : SI(220) ASYMMETRIC CUT SINGLE REMARK 200 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27391 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.5600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.55800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.130 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.5 REMARK 200 STARTING MODEL: 4NCX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 76.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN INCUBATED WITH 4MM EACH OF REMARK 280 AMPPNP, HALOFUGINONE, B-ME, AND MGCL2 FOR 5MIN, THEN ADDED 1 TO REMARK 280 1 WITH WIZ3/4(H5)- 20%PEG-8000, 0.1M HEPES/NAOH, PH=7.5, 10% REMARK 280 ISOPROPANOL, 0.2M AMSO4, CRYOPROTECTED WITH 20%EG, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.05333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 124.10667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 124.10667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 62.05333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -454.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 241 REMARK 465 ALA A 242 REMARK 465 HIS A 243 REMARK 465 HIS A 244 REMARK 465 HIS A 245 REMARK 465 HIS A 246 REMARK 465 HIS A 247 REMARK 465 HIS A 248 REMARK 465 SER A 249 REMARK 465 ASN A 250 REMARK 465 GLU A 328 REMARK 465 LYS A 329 REMARK 465 ASN A 330 REMARK 465 HIS A 331 REMARK 465 SER A 697 REMARK 465 LEU A 698 REMARK 465 ASN A 699 REMARK 465 GLN A 700 REMARK 465 THR A 701 REMARK 465 ASN A 702 REMARK 465 SER A 703 REMARK 465 GLU A 704 REMARK 465 THR A 705 REMARK 465 THR A 706 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 251 CG1 CG2 CD1 REMARK 470 LYS A 257 CG CD CE NZ REMARK 470 LYS A 307 CG CD CE NZ REMARK 470 LYS A 322 CG CD CE NZ REMARK 470 LYS A 327 CG CD CE NZ REMARK 470 ILE A 332 CG1 CG2 CD1 REMARK 470 ASN A 349 CG OD1 ND2 REMARK 470 GLU A 352 CG CD OE1 OE2 REMARK 470 ARG A 373 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 393 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 394 CG CD CE NZ REMARK 470 GLN A 395 CG CD OE1 NE2 REMARK 470 LYS A 415 CG CD CE NZ REMARK 470 GLU A 418 CG CD OE1 OE2 REMARK 470 LYS A 488 CG CD CE NZ REMARK 470 LYS A 491 CG CD CE NZ REMARK 470 GLU A 497 CG CD OE1 OE2 REMARK 470 GLU A 499 CG CD OE1 OE2 REMARK 470 VAL A 500 CG1 CG2 REMARK 470 LYS A 501 CG CD CE NZ REMARK 470 LYS A 537 CG CD CE NZ REMARK 470 ILE A 545 CG1 CG2 CD1 REMARK 470 LYS A 548 CG CD CE NZ REMARK 470 ASN A 553 CG OD1 ND2 REMARK 470 HIS A 556 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 560 CG CD CE NZ REMARK 470 ILE A 562 CG1 CG2 CD1 REMARK 470 LYS A 564 CG CD CE NZ REMARK 470 LYS A 604 CG CD CE NZ REMARK 470 VAL A 612 CG1 CG2 REMARK 470 LYS A 625 CG CD CE NZ REMARK 470 GLU A 627 CG CD OE1 OE2 REMARK 470 LYS A 642 CG CD CE NZ REMARK 470 LYS A 649 CG CD CE NZ REMARK 470 LYS A 650 CG CD CE NZ REMARK 470 LEU A 669 CG CD1 CD2 REMARK 470 ASN A 670 CG OD1 ND2 REMARK 470 LYS A 671 CG CD CE NZ REMARK 470 LYS A 672 CG CD CE NZ REMARK 470 LYS A 690 CG CD CE NZ REMARK 470 LYS A 691 CG CD CE NZ REMARK 470 LEU A 707 CG CD1 CD2 REMARK 470 LYS A 712 CG CD CE NZ REMARK 470 ASN A 726 CG OD1 ND2 REMARK 470 LYS A 728 CG CD CE NZ REMARK 470 SER A 732 OG REMARK 470 LYS A 737 CG CD CE NZ REMARK 470 ARG A 744 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 326 57.99 -97.56 REMARK 500 GLU A 333 137.92 -178.39 REMARK 500 PHE A 393 -70.78 -61.29 REMARK 500 LYS A 394 136.84 -35.47 REMARK 500 PHE A 399 -46.17 68.57 REMARK 500 ASP A 496 159.22 -47.04 REMARK 500 GLU A 499 10.16 80.49 REMARK 500 TYR A 547 -39.65 -139.45 REMARK 500 SER A 580 32.29 -97.00 REMARK 500 ASN A 609 76.11 41.95 REMARK 500 SER A 610 -169.08 -167.32 REMARK 500 LYS A 671 34.79 -88.47 REMARK 500 LYS A 672 27.03 49.33 REMARK 500 GLU A 681 7.40 83.10 REMARK 500 LYS A 690 -70.21 -58.38 REMARK 500 GLN A 694 -9.83 -51.25 REMARK 500 LEU A 714 -65.47 -93.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HFG A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 806 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 807 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 808 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 809 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 810 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 811 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 812 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 813 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 814 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 815 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 816 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 817 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 818 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 819 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4NCX RELATED DB: PDB REMARK 900 APO FORM OF THE SAME PROTEIN REMARK 900 RELATED ID: SSGCID-PLFAA.18681.A RELATED DB: TARGETTRACK DBREF 4OLF A 249 746 UNP Q8I5R7 SYP_PLAF7 249 746 SEQADV 4OLF MET A 241 UNP Q8I5R7 EXPRESSION TAG SEQADV 4OLF ALA A 242 UNP Q8I5R7 EXPRESSION TAG SEQADV 4OLF HIS A 243 UNP Q8I5R7 EXPRESSION TAG SEQADV 4OLF HIS A 244 UNP Q8I5R7 EXPRESSION TAG SEQADV 4OLF HIS A 245 UNP Q8I5R7 EXPRESSION TAG SEQADV 4OLF HIS A 246 UNP Q8I5R7 EXPRESSION TAG SEQADV 4OLF HIS A 247 UNP Q8I5R7 EXPRESSION TAG SEQADV 4OLF HIS A 248 UNP Q8I5R7 EXPRESSION TAG SEQRES 1 A 506 MET ALA HIS HIS HIS HIS HIS HIS SER ASN ILE LEU GLY SEQRES 2 A 506 ILE THR SER LYS LYS ILE GLU ASN PHE SER ASP TRP TYR SEQRES 3 A 506 THR GLN VAL ILE VAL LYS SER GLU LEU ILE GLU TYR TYR SEQRES 4 A 506 ASP ILE SER GLY CYS TYR ILE LEU ARG PRO ALA ALA TYR SEQRES 5 A 506 TYR ILE TRP GLU CYS VAL GLN ALA PHE PHE ASN LYS GLU SEQRES 6 A 506 ILE LYS LYS LEU ASN VAL GLU ASN SER TYR PHE PRO LEU SEQRES 7 A 506 PHE VAL THR LYS ASN LYS LEU GLU LYS GLU LYS ASN HIS SEQRES 8 A 506 ILE GLU GLY PHE SER PRO GLU VAL ALA TRP VAL THR LYS SEQRES 9 A 506 TYR GLY ASP SER ASN LEU PRO GLU GLU ILE ALA ILE ARG SEQRES 10 A 506 PRO THR SER GLU THR ILE MET TYR SER VAL PHE PRO LYS SEQRES 11 A 506 TRP ILE ARG SER TYR ARG ASP LEU PRO LEU LYS LEU ASN SEQRES 12 A 506 GLN TRP ASN THR VAL VAL ARG TRP GLU PHE LYS GLN PRO SEQRES 13 A 506 THR PRO PHE ILE ARG THR ARG GLU PHE LEU TRP GLN GLU SEQRES 14 A 506 GLY HIS THR ALA HIS LYS ASN GLU GLU GLU ALA VAL LYS SEQRES 15 A 506 LEU VAL PHE ASP ILE LEU ASP LEU TYR ARG ARG TRP TYR SEQRES 16 A 506 GLU GLU TYR LEU ALA VAL PRO ILE ILE LYS GLY ILE LYS SEQRES 17 A 506 SER GLU GLY GLU LYS PHE GLY GLY ALA ASN PHE THR SER SEQRES 18 A 506 THR ALA GLU ALA PHE ILE SER GLU ASN GLY ARG ALA ILE SEQRES 19 A 506 GLN ALA ALA THR SER HIS TYR LEU GLY THR ASN PHE ALA SEQRES 20 A 506 LYS MET PHE LYS ILE GLU PHE GLU ASP GLU ASN GLU VAL SEQRES 21 A 506 LYS GLN TYR VAL HIS GLN THR SER TRP GLY CYS THR THR SEQRES 22 A 506 ARG SER ILE GLY ILE MET ILE MET THR HIS GLY ASP ASP SEQRES 23 A 506 LYS GLY LEU VAL LEU PRO PRO ASN VAL SER LYS TYR LYS SEQRES 24 A 506 VAL VAL ILE VAL PRO ILE PHE TYR LYS THR THR ASP GLU SEQRES 25 A 506 ASN ALA ILE HIS SER TYR CYS LYS ASP ILE GLU LYS ILE SEQRES 26 A 506 LEU LYS ASN ALA GLN ILE ASN CYS VAL TYR ASP ASP ARG SEQRES 27 A 506 ALA SER TYR SER PRO GLY TYR LYS PHE ASN HIS TRP GLU SEQRES 28 A 506 LEU ARG GLY ILE PRO ILE ARG ILE GLU VAL GLY PRO LYS SEQRES 29 A 506 ASP LEU GLN ASN ASN SER CYS VAL ILE VAL ARG ARG ASP SEQRES 30 A 506 ASN ASN GLU LYS CYS ASN VAL LYS LYS GLU SER VAL LEU SEQRES 31 A 506 LEU GLU THR GLN GLN MET LEU VAL ASP ILE HIS LYS ASN SEQRES 32 A 506 LEU PHE LEU LYS ALA LYS LYS LYS LEU ASP ASP SER ILE SEQRES 33 A 506 VAL GLN VAL THR SER PHE SER GLU VAL MET ASN ALA LEU SEQRES 34 A 506 ASN LYS LYS LYS MET VAL LEU ALA PRO TRP CYS GLU ASP SEQRES 35 A 506 ILE ALA THR GLU GLU GLU ILE LYS LYS GLU THR GLN ARG SEQRES 36 A 506 LEU SER LEU ASN GLN THR ASN SER GLU THR THR LEU SER SEQRES 37 A 506 GLY ALA MET LYS PRO LEU CYS ILE PRO LEU ASP GLN PRO SEQRES 38 A 506 PRO MET PRO PRO ASN MET LYS CYS PHE TRP SER GLY LYS SEQRES 39 A 506 PRO ALA LYS ARG TRP CYS LEU PHE GLY ARG SER TYR HET ANP A 801 31 HET HFG A 802 24 HET SO4 A 803 5 HET SO4 A 804 5 HET SO4 A 805 5 HET SO4 A 806 5 HET SO4 A 807 5 HET SO4 A 808 5 HET SO4 A 809 5 HET SO4 A 810 5 HET SO4 A 811 5 HET SO4 A 812 5 HET SO4 A 813 5 HET SO4 A 814 5 HET SO4 A 815 5 HET SO4 A 816 5 HET SO4 A 817 5 HET NA A 818 1 HET EDO A 819 4 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM HFG 7-BROMO-6-CHLORO-3-{3-[(2R,3S)-3-HYDROXYPIPERIDIN-2- HETNAM 2 HFG YL]-2-OXOPROPYL}QUINAZOLIN-4(3H)-ONE HETNAM SO4 SULFATE ION HETNAM NA SODIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN HFG HALOFUGINONE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ANP C10 H17 N6 O12 P3 FORMUL 3 HFG C16 H17 BR CL N3 O3 FORMUL 4 SO4 15(O4 S 2-) FORMUL 19 NA NA 1+ FORMUL 20 EDO C2 H6 O2 FORMUL 21 HOH *8(H2 O) HELIX 1 1 ASN A 261 SER A 273 1 13 HELIX 2 2 ARG A 288 LYS A 308 1 21 HELIX 3 3 LYS A 322 GLU A 326 1 5 HELIX 4 4 PHE A 335 VAL A 339 5 5 HELIX 5 5 SER A 360 SER A 366 1 7 HELIX 6 6 VAL A 367 ILE A 372 1 6 HELIX 7 7 SER A 374 LEU A 378 5 5 HELIX 8 8 ASN A 416 LEU A 439 1 24 HELIX 9 9 THR A 484 LYS A 491 1 8 HELIX 10 10 THR A 513 GLY A 524 1 12 HELIX 11 11 PRO A 532 SER A 536 5 5 HELIX 12 12 LYS A 548 THR A 550 5 3 HELIX 13 13 ASP A 551 ALA A 569 1 19 HELIX 14 14 SER A 582 ARG A 593 1 12 HELIX 15 15 GLY A 602 ASN A 608 1 7 HELIX 16 16 SER A 628 SER A 655 1 28 HELIX 17 17 SER A 661 LYS A 671 1 11 HELIX 18 18 ILE A 683 GLN A 694 1 12 SHEET 1 A 2 ILE A 276 GLU A 277 0 SHEET 2 A 2 ILE A 286 LEU A 287 -1 O ILE A 286 N GLU A 277 SHEET 1 B11 GLU A 312 ASN A 313 0 SHEET 2 B11 LEU A 380 VAL A 389 1 O LYS A 381 N GLU A 312 SHEET 3 B11 GLU A 404 HIS A 414 -1 O HIS A 411 N LEU A 382 SHEET 4 B11 HIS A 505 THR A 512 -1 O TRP A 509 N GLY A 410 SHEET 5 B11 ARG A 472 GLY A 483 -1 N HIS A 480 O SER A 508 SHEET 6 B11 PHE A 459 ILE A 467 -1 N ALA A 463 O ALA A 476 SHEET 7 B11 ILE A 444 ILE A 447 -1 N GLY A 446 O THR A 462 SHEET 8 B11 LYS A 712 PRO A 717 -1 O ILE A 716 N ILE A 447 SHEET 9 B11 ARG A 738 GLY A 743 -1 O GLY A 743 N LYS A 712 SHEET 10 B11 MET A 674 TRP A 679 -1 N ALA A 677 O CYS A 740 SHEET 11 B11 ILE A 656 GLN A 658 1 N VAL A 657 O LEU A 676 SHEET 1 C 3 PHE A 319 THR A 321 0 SHEET 2 C 3 SER A 348 ILE A 356 -1 O ALA A 355 N VAL A 320 SHEET 3 C 3 TRP A 341 TYR A 345 -1 N THR A 343 O LEU A 350 SHEET 1 D 2 GLU A 493 GLU A 495 0 SHEET 2 D 2 LYS A 501 TYR A 503 -1 O GLN A 502 N PHE A 494 SHEET 1 E 5 CYS A 573 TYR A 575 0 SHEET 2 E 5 VAL A 540 PRO A 544 1 N ILE A 542 O VAL A 574 SHEET 3 E 5 ILE A 597 VAL A 601 1 O ILE A 599 N VAL A 543 SHEET 4 E 5 SER A 610 ARG A 615 -1 O VAL A 612 N GLU A 600 SHEET 5 E 5 LYS A 621 LYS A 625 -1 O CYS A 622 N ILE A 613 LINK O TYR A 746 NA NA A 818 1555 1555 3.17 CISPEP 1 LEU A 378 PRO A 379 0 -5.07 SITE 1 AC1 16 ARG A 390 GLU A 392 ILE A 400 ARG A 401 SITE 2 AC1 16 THR A 402 PHE A 405 TRP A 407 GLN A 475 SITE 3 AC1 16 ALA A 476 ALA A 477 THR A 512 ARG A 514 SITE 4 AC1 16 HFG A 802 NA A 818 HOH A 904 HOH A 905 SITE 1 AC2 15 PHE A 335 GLU A 338 VAL A 339 PRO A 358 SITE 2 AC2 15 THR A 359 GLU A 361 ARG A 390 TRP A 407 SITE 3 AC2 15 PHE A 454 THR A 478 HIS A 480 SER A 508 SITE 4 AC2 15 TRP A 509 GLY A 510 ANP A 801 SITE 1 AC3 4 ASN A 261 PHE A 262 SER A 263 HOH A 907 SITE 1 AC4 4 TYR A 278 SER A 282 GLY A 283 TYR A 285 SITE 1 AC5 3 GLU A 312 TYR A 538 ARG A 593 SITE 1 AC6 3 GLY A 334 PHE A 335 SER A 336 SITE 1 AC7 4 ARG A 376 ARG A 578 ALA A 579 SER A 580 SITE 1 AC8 4 GLU A 274 HIS A 589 TRP A 590 ARG A 593 SITE 1 AC9 6 LYS A 258 GLU A 469 THR A 522 HIS A 523 SITE 2 AC9 6 GLY A 524 LYS A 651 SITE 1 BC1 2 SER A 282 ARG A 403 SITE 1 BC2 3 TYR A 293 GLU A 296 CYS A 297 SITE 1 BC3 3 TYR A 293 LYS A 537 ASN A 572 SITE 1 BC4 6 TYR A 292 GLU A 296 GLN A 299 ASN A 303 SITE 2 BC4 6 ASN A 313 TRP A 385 SITE 1 BC5 5 ASN A 303 LYS A 307 VAL A 311 GLU A 312 SITE 2 BC5 5 ASN A 313 SITE 1 BC6 4 GLU A 417 TYR A 481 GLY A 483 THR A 484 SITE 1 BC7 4 ASN A 618 GLU A 620 ASN A 643 LYS A 647 SITE 1 BC8 2 ASN A 623 ARG A 695 SITE 1 BC9 5 GLN A 475 ARG A 514 SER A 745 TYR A 746 SITE 2 BC9 5 ANP A 801 SITE 1 CC1 3 GLU A 277 ARG A 288 LYS A 370 CRYST1 106.550 106.550 186.160 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009385 0.005419 0.000000 0.00000 SCALE2 0.000000 0.010837 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005372 0.00000