HEADER ELECTRON TRANSPORT 24-JAN-14 4OLP TITLE LIGAND-FREE STRUCTURE OF THE GRPU MICROCOMPARTMENT SHELL PROTEIN FROM TITLE 2 PECTOBACTERIUM WASABIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GRPU MICROCOMPARTMENT SHELL PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PECTOBACTERIUM WASABIAE; SOURCE 3 ORGANISM_TAXID: 561231; SOURCE 4 STRAIN: WPP163; SOURCE 5 GENE: PECWA_4094; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B+ KEYWDS BACTERIAL MICROCOMPARTMENT, GLYCYL-RADICAL PROPANEDIOL, BMC SHELL KEYWDS 2 PROTEIN, IRON-SULFUR CLUSTER, ELECTRON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR N.M.WHEATLEY,M.C.THOMPSON,S.D.GIDANIYAN,M.R.SAWAYA,J.JORDA,T.O.YEATES REVDAT 4 28-FEB-24 4OLP 1 SEQADV REVDAT 3 17-SEP-14 4OLP 1 JRNL REVDAT 2 20-AUG-14 4OLP 1 JRNL REVDAT 1 30-JUL-14 4OLP 0 JRNL AUTH M.C.THOMPSON,N.M.WHEATLEY,J.JORDA,M.R.SAWAYA,S.D.GIDANIYAN, JRNL AUTH 2 H.AHMED,Z.YANG,K.N.MCCARTY,J.P.WHITELEGGE,T.O.YEATES JRNL TITL IDENTIFICATION OF A UNIQUE FE-S CLUSTER BINDING SITE IN A JRNL TITL 2 GLYCYL-RADICAL TYPE MICROCOMPARTMENT SHELL PROTEIN. JRNL REF J.MOL.BIOL. V. 426 3287 2014 JRNL REFN ISSN 0022-2836 JRNL PMID 25102080 JRNL DOI 10.1016/J.JMB.2014.07.018 REMARK 2 REMARK 2 RESOLUTION. 2.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 9710 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 468 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.79 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.86 REMARK 3 REFLECTION IN BIN (WORKING SET) : 633 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.3660 REMARK 3 BIN FREE R VALUE SET COUNT : 33 REMARK 3 BIN FREE R VALUE : 0.3750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2637 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 4 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 99.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.65000 REMARK 3 B22 (A**2) : -3.65000 REMARK 3 B33 (A**2) : 11.86000 REMARK 3 B12 (A**2) : -1.83000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.406 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.422 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 49.587 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2668 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2727 ; 0.007 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3592 ; 1.602 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6249 ; 1.446 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 327 ; 5.670 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 109 ;39.611 ;22.936 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 502 ;19.281 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;18.741 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 433 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2877 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 559 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1338 ; 4.506 ; 7.193 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1337 ; 4.505 ; 7.193 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1655 ; 6.947 ;10.753 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 2 94 B 2 94 4470 0.160 0.050 REMARK 3 2 A 2 94 C 2 94 4498 0.150 0.050 REMARK 3 3 A 2 94 D 2 94 4164 0.170 0.050 REMARK 3 4 B 2 94 C 2 94 4943 0.170 0.050 REMARK 3 5 B 2 94 D 2 94 4489 0.160 0.050 REMARK 3 6 C 2 94 D 2 94 4424 0.160 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 94 REMARK 3 ORIGIN FOR THE GROUP (A): -17.4512 14.4457 19.5561 REMARK 3 T TENSOR REMARK 3 T11: 0.1916 T22: 0.2053 REMARK 3 T33: 0.2220 T12: 0.0044 REMARK 3 T13: -0.1300 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 3.2326 L22: 4.6815 REMARK 3 L33: 0.3033 L12: 3.1966 REMARK 3 L13: 0.8514 L23: 1.1827 REMARK 3 S TENSOR REMARK 3 S11: -0.0709 S12: 0.0252 S13: 0.6335 REMARK 3 S21: -0.0906 S22: -0.0982 S23: 0.5105 REMARK 3 S31: -0.0305 S32: -0.0385 S33: 0.1691 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 94 REMARK 3 ORIGIN FOR THE GROUP (A): 3.8902 23.5275 20.0585 REMARK 3 T TENSOR REMARK 3 T11: 0.3069 T22: 0.1706 REMARK 3 T33: 0.1718 T12: -0.0958 REMARK 3 T13: -0.0589 T23: 0.1269 REMARK 3 L TENSOR REMARK 3 L11: 2.6136 L22: 5.3423 REMARK 3 L33: 0.7029 L12: -1.3192 REMARK 3 L13: -1.1384 L23: 1.2685 REMARK 3 S TENSOR REMARK 3 S11: -0.1002 S12: 0.1005 S13: -0.2709 REMARK 3 S21: -0.2849 S22: -0.0368 S23: 0.1986 REMARK 3 S31: -0.1606 S32: 0.0159 S33: 0.1371 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 94 REMARK 3 ORIGIN FOR THE GROUP (A): 6.6258 22.5933 -22.4456 REMARK 3 T TENSOR REMARK 3 T11: 0.2152 T22: 0.2741 REMARK 3 T33: 0.0889 T12: -0.0179 REMARK 3 T13: -0.0111 T23: -0.0816 REMARK 3 L TENSOR REMARK 3 L11: 6.2905 L22: 1.4874 REMARK 3 L33: 0.2599 L12: 1.8385 REMARK 3 L13: -0.2927 L23: 0.3870 REMARK 3 S TENSOR REMARK 3 S11: 0.2057 S12: 0.1121 S13: 0.5476 REMARK 3 S21: 0.3706 S22: -0.1413 S23: 0.1238 REMARK 3 S31: 0.1363 S32: -0.0439 S33: -0.0643 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 2 D 94 REMARK 3 ORIGIN FOR THE GROUP (A): -16.0122 16.9113 -21.4349 REMARK 3 T TENSOR REMARK 3 T11: 0.2152 T22: 0.2841 REMARK 3 T33: 0.1726 T12: 0.0665 REMARK 3 T13: 0.0878 T23: -0.1171 REMARK 3 L TENSOR REMARK 3 L11: 4.4547 L22: 0.8346 REMARK 3 L33: 0.2178 L12: 1.8951 REMARK 3 L13: 0.3828 L23: 0.2057 REMARK 3 S TENSOR REMARK 3 S11: -0.0076 S12: -0.1368 S13: 0.3030 REMARK 3 S21: 0.0104 S22: 0.0329 S23: 0.0872 REMARK 3 S31: 0.1258 S32: 0.1157 S33: -0.0253 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4OLP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000084650. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97920 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9715 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.790 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 12.90 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.60200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM/POTASSIUM PHOSPHATE, 30% 2 REMARK 280 -METHYL-2,4-PENTANEDIOL, PH 6.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 58.92250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.01892 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 25.34100 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 58.92250 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 34.01892 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 25.34100 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 58.92250 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 34.01892 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 25.34100 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 68.03784 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 50.68200 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 68.03784 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 50.68200 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 68.03784 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 50.68200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 29 REMARK 465 GLU A 30 REMARK 465 MET A 31 REMARK 465 VAL A 32 REMARK 465 ARG A 33 REMARK 465 ILE A 34 REMARK 465 SER A 68 REMARK 465 CYS A 69 REMARK 465 PRO A 70 REMARK 465 GLN A 71 REMARK 465 ASP A 95 REMARK 465 ALA A 96 REMARK 465 SER A 97 REMARK 465 THR A 98 REMARK 465 PHE A 99 REMARK 465 LEU A 100 REMARK 465 GLU A 101 REMARK 465 HIS A 102 REMARK 465 HIS A 103 REMARK 465 HIS A 104 REMARK 465 HIS A 105 REMARK 465 HIS A 106 REMARK 465 HIS A 107 REMARK 465 MET B 1 REMARK 465 GLY B 67 REMARK 465 SER B 68 REMARK 465 CYS B 69 REMARK 465 PRO B 70 REMARK 465 GLN B 71 REMARK 465 HIS B 72 REMARK 465 ASP B 95 REMARK 465 ALA B 96 REMARK 465 SER B 97 REMARK 465 THR B 98 REMARK 465 PHE B 99 REMARK 465 LEU B 100 REMARK 465 GLU B 101 REMARK 465 HIS B 102 REMARK 465 HIS B 103 REMARK 465 HIS B 104 REMARK 465 HIS B 105 REMARK 465 HIS B 106 REMARK 465 HIS B 107 REMARK 465 MET C 1 REMARK 465 GLY C 67 REMARK 465 SER C 68 REMARK 465 CYS C 69 REMARK 465 PRO C 70 REMARK 465 GLN C 71 REMARK 465 HIS C 72 REMARK 465 ASP C 95 REMARK 465 ALA C 96 REMARK 465 SER C 97 REMARK 465 THR C 98 REMARK 465 PHE C 99 REMARK 465 LEU C 100 REMARK 465 GLU C 101 REMARK 465 HIS C 102 REMARK 465 HIS C 103 REMARK 465 HIS C 104 REMARK 465 HIS C 105 REMARK 465 HIS C 106 REMARK 465 HIS C 107 REMARK 465 MET D 1 REMARK 465 ARG D 28 REMARK 465 LEU D 29 REMARK 465 GLU D 30 REMARK 465 MET D 31 REMARK 465 VAL D 32 REMARK 465 GLY D 67 REMARK 465 SER D 68 REMARK 465 CYS D 69 REMARK 465 PRO D 70 REMARK 465 GLN D 71 REMARK 465 HIS D 72 REMARK 465 ILE D 73 REMARK 465 THR D 74 REMARK 465 ASP D 95 REMARK 465 ALA D 96 REMARK 465 SER D 97 REMARK 465 THR D 98 REMARK 465 PHE D 99 REMARK 465 LEU D 100 REMARK 465 GLU D 101 REMARK 465 HIS D 102 REMARK 465 HIS D 103 REMARK 465 HIS D 104 REMARK 465 HIS D 105 REMARK 465 HIS D 106 REMARK 465 HIS D 107 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 33 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 59 -4.22 76.14 REMARK 500 HIS B 59 -1.56 71.60 REMARK 500 THR B 74 -168.09 -120.35 REMARK 500 ALA C 58 -4.27 71.79 REMARK 500 THR C 74 -169.07 -121.28 REMARK 500 HIS D 59 68.01 65.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4OLO RELATED DB: PDB DBREF 4OLP A 1 99 UNP D0KBF1 D0KBF1_PECWW 1 99 DBREF 4OLP B 1 99 UNP D0KBF1 D0KBF1_PECWW 1 99 DBREF 4OLP C 1 99 UNP D0KBF1 D0KBF1_PECWW 1 99 DBREF 4OLP D 1 99 UNP D0KBF1 D0KBF1_PECWW 1 99 SEQADV 4OLP LEU A 100 UNP D0KBF1 EXPRESSION TAG SEQADV 4OLP GLU A 101 UNP D0KBF1 EXPRESSION TAG SEQADV 4OLP HIS A 102 UNP D0KBF1 EXPRESSION TAG SEQADV 4OLP HIS A 103 UNP D0KBF1 EXPRESSION TAG SEQADV 4OLP HIS A 104 UNP D0KBF1 EXPRESSION TAG SEQADV 4OLP HIS A 105 UNP D0KBF1 EXPRESSION TAG SEQADV 4OLP HIS A 106 UNP D0KBF1 EXPRESSION TAG SEQADV 4OLP HIS A 107 UNP D0KBF1 EXPRESSION TAG SEQADV 4OLP LEU B 100 UNP D0KBF1 EXPRESSION TAG SEQADV 4OLP GLU B 101 UNP D0KBF1 EXPRESSION TAG SEQADV 4OLP HIS B 102 UNP D0KBF1 EXPRESSION TAG SEQADV 4OLP HIS B 103 UNP D0KBF1 EXPRESSION TAG SEQADV 4OLP HIS B 104 UNP D0KBF1 EXPRESSION TAG SEQADV 4OLP HIS B 105 UNP D0KBF1 EXPRESSION TAG SEQADV 4OLP HIS B 106 UNP D0KBF1 EXPRESSION TAG SEQADV 4OLP HIS B 107 UNP D0KBF1 EXPRESSION TAG SEQADV 4OLP LEU C 100 UNP D0KBF1 EXPRESSION TAG SEQADV 4OLP GLU C 101 UNP D0KBF1 EXPRESSION TAG SEQADV 4OLP HIS C 102 UNP D0KBF1 EXPRESSION TAG SEQADV 4OLP HIS C 103 UNP D0KBF1 EXPRESSION TAG SEQADV 4OLP HIS C 104 UNP D0KBF1 EXPRESSION TAG SEQADV 4OLP HIS C 105 UNP D0KBF1 EXPRESSION TAG SEQADV 4OLP HIS C 106 UNP D0KBF1 EXPRESSION TAG SEQADV 4OLP HIS C 107 UNP D0KBF1 EXPRESSION TAG SEQADV 4OLP LEU D 100 UNP D0KBF1 EXPRESSION TAG SEQADV 4OLP GLU D 101 UNP D0KBF1 EXPRESSION TAG SEQADV 4OLP HIS D 102 UNP D0KBF1 EXPRESSION TAG SEQADV 4OLP HIS D 103 UNP D0KBF1 EXPRESSION TAG SEQADV 4OLP HIS D 104 UNP D0KBF1 EXPRESSION TAG SEQADV 4OLP HIS D 105 UNP D0KBF1 EXPRESSION TAG SEQADV 4OLP HIS D 106 UNP D0KBF1 EXPRESSION TAG SEQADV 4OLP HIS D 107 UNP D0KBF1 EXPRESSION TAG SEQRES 1 A 107 MET LYS LYS ARG ILE ILE ASN ALA PRO THR LEU GLU THR SEQRES 2 A 107 LEU ALA MET LEU LYS ARG ARG MET PRO SER GLU SER ARG SEQRES 3 A 107 ASN ARG LEU GLU MET VAL ARG ILE ASP ALA ILE GLY LEU SEQRES 4 A 107 ILE MET LEU PRO VAL PRO ASP LEU TYR PHE TYR ALA ASP SEQRES 5 A 107 GLN ALA SER LYS SER ALA HIS VAL ALA VAL SER GLU ILE SEQRES 6 A 107 PHE GLY SER CYS PRO GLN HIS ILE THR THR LEU ALA ILE SEQRES 7 A 107 PHE GLY GLU VAL ALA ALA VAL ASN GLU ALA MET ARG ILE SEQRES 8 A 107 ILE GLU ASP ASP ALA SER THR PHE LEU GLU HIS HIS HIS SEQRES 9 A 107 HIS HIS HIS SEQRES 1 B 107 MET LYS LYS ARG ILE ILE ASN ALA PRO THR LEU GLU THR SEQRES 2 B 107 LEU ALA MET LEU LYS ARG ARG MET PRO SER GLU SER ARG SEQRES 3 B 107 ASN ARG LEU GLU MET VAL ARG ILE ASP ALA ILE GLY LEU SEQRES 4 B 107 ILE MET LEU PRO VAL PRO ASP LEU TYR PHE TYR ALA ASP SEQRES 5 B 107 GLN ALA SER LYS SER ALA HIS VAL ALA VAL SER GLU ILE SEQRES 6 B 107 PHE GLY SER CYS PRO GLN HIS ILE THR THR LEU ALA ILE SEQRES 7 B 107 PHE GLY GLU VAL ALA ALA VAL ASN GLU ALA MET ARG ILE SEQRES 8 B 107 ILE GLU ASP ASP ALA SER THR PHE LEU GLU HIS HIS HIS SEQRES 9 B 107 HIS HIS HIS SEQRES 1 C 107 MET LYS LYS ARG ILE ILE ASN ALA PRO THR LEU GLU THR SEQRES 2 C 107 LEU ALA MET LEU LYS ARG ARG MET PRO SER GLU SER ARG SEQRES 3 C 107 ASN ARG LEU GLU MET VAL ARG ILE ASP ALA ILE GLY LEU SEQRES 4 C 107 ILE MET LEU PRO VAL PRO ASP LEU TYR PHE TYR ALA ASP SEQRES 5 C 107 GLN ALA SER LYS SER ALA HIS VAL ALA VAL SER GLU ILE SEQRES 6 C 107 PHE GLY SER CYS PRO GLN HIS ILE THR THR LEU ALA ILE SEQRES 7 C 107 PHE GLY GLU VAL ALA ALA VAL ASN GLU ALA MET ARG ILE SEQRES 8 C 107 ILE GLU ASP ASP ALA SER THR PHE LEU GLU HIS HIS HIS SEQRES 9 C 107 HIS HIS HIS SEQRES 1 D 107 MET LYS LYS ARG ILE ILE ASN ALA PRO THR LEU GLU THR SEQRES 2 D 107 LEU ALA MET LEU LYS ARG ARG MET PRO SER GLU SER ARG SEQRES 3 D 107 ASN ARG LEU GLU MET VAL ARG ILE ASP ALA ILE GLY LEU SEQRES 4 D 107 ILE MET LEU PRO VAL PRO ASP LEU TYR PHE TYR ALA ASP SEQRES 5 D 107 GLN ALA SER LYS SER ALA HIS VAL ALA VAL SER GLU ILE SEQRES 6 D 107 PHE GLY SER CYS PRO GLN HIS ILE THR THR LEU ALA ILE SEQRES 7 D 107 PHE GLY GLU VAL ALA ALA VAL ASN GLU ALA MET ARG ILE SEQRES 8 D 107 ILE GLU ASP ASP ALA SER THR PHE LEU GLU HIS HIS HIS SEQRES 9 D 107 HIS HIS HIS FORMUL 5 HOH *4(H2 O) HELIX 1 1 THR A 10 ARG A 20 1 11 HELIX 2 2 PRO A 22 ASN A 27 1 6 HELIX 3 3 VAL A 44 SER A 57 1 14 HELIX 4 4 GLU A 81 GLU A 93 1 13 HELIX 5 5 THR B 10 ARG B 20 1 11 HELIX 6 6 PRO B 22 ASN B 27 1 6 HELIX 7 7 ARG B 28 VAL B 32 5 5 HELIX 8 8 PRO B 43 SER B 57 1 15 HELIX 9 9 GLU B 81 GLU B 93 1 13 HELIX 10 10 THR C 10 ARG C 20 1 11 HELIX 11 11 PRO C 22 MET C 31 1 10 HELIX 12 12 PRO C 43 ALA C 58 1 16 HELIX 13 13 GLU C 81 GLU C 93 1 13 HELIX 14 14 THR D 10 ARG D 20 1 11 HELIX 15 15 PRO D 43 ALA D 58 1 16 HELIX 16 16 GLU D 81 GLU D 93 1 13 SHEET 1 A 4 LYS A 3 ASN A 7 0 SHEET 2 A 4 ALA A 36 PRO A 43 -1 O LEU A 39 N ARG A 4 SHEET 3 A 4 ILE A 73 GLY A 80 -1 O LEU A 76 N ILE A 40 SHEET 4 A 4 VAL A 60 ILE A 65 -1 N ALA A 61 O PHE A 79 SHEET 1 B 4 LYS B 3 ASN B 7 0 SHEET 2 B 4 ALA B 36 LEU B 42 -1 O LEU B 39 N ARG B 4 SHEET 3 B 4 THR B 74 GLY B 80 -1 O LEU B 76 N ILE B 40 SHEET 4 B 4 VAL B 60 ILE B 65 -1 N ALA B 61 O PHE B 79 SHEET 1 C 4 ARG C 4 ASN C 7 0 SHEET 2 C 4 ALA C 36 LEU C 42 -1 O LEU C 39 N ARG C 4 SHEET 3 C 4 THR C 74 GLY C 80 -1 O LEU C 76 N ILE C 40 SHEET 4 C 4 ALA C 61 ILE C 65 -1 N ALA C 61 O PHE C 79 SHEET 1 D 4 LYS D 3 ASN D 7 0 SHEET 2 D 4 ALA D 36 ILE D 40 -1 O LEU D 39 N ARG D 4 SHEET 3 D 4 LEU D 76 GLY D 80 -1 O LEU D 76 N ILE D 40 SHEET 4 D 4 ALA D 61 GLU D 64 -1 N ALA D 61 O PHE D 79 CRYST1 117.845 117.845 76.023 90.00 90.00 120.00 H 3 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008486 0.004899 0.000000 0.00000 SCALE2 0.000000 0.009798 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013154 0.00000