data_4OLR # _entry.id 4OLR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4OLR pdb_00004olr 10.2210/pdb4olr/pdb RCSB RCSB084652 ? ? WWPDB D_1000084652 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-07-02 2 'Structure model' 1 1 2014-08-06 3 'Structure model' 1 2 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 4OLR _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2014-01-24 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sangwan, S.' 1 'Eisenberg, D.' 2 'Sawaya, M.R.' 3 'Do, T.D.' 4 'Bowers, M.T.' 5 'Lapointe, N.E.' 6 'Teplow, D.B.' 7 'Feinstein, S.C.' 8 # _citation.id primary _citation.title ;Factors that drive Peptide assembly from native to amyloid structures: experimental and theoretical analysis of [leu-5]-enkephalin mutants. ; _citation.journal_abbrev J.Phys.Chem.B _citation.journal_volume 118 _citation.page_first 7247 _citation.page_last 7256 _citation.year 2014 _citation.journal_id_ASTM JPCBFK _citation.country US _citation.journal_id_ISSN 1089-5647 _citation.journal_id_CSD 1278 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24915112 _citation.pdbx_database_id_DOI 10.1021/jp502473s # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Do, T.D.' 1 ? primary 'LaPointe, N.E.' 2 ? primary 'Sangwan, S.' 3 ? primary 'Teplow, D.B.' 4 ? primary 'Feinstein, S.C.' 5 ? primary 'Sawaya, M.R.' 6 ? primary 'Eisenberg, D.S.' 7 ? primary 'Bowers, M.T.' 8 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn '[Leu-5]-Enkephalin mutant - YVVFV' 625.755 2 ? G2V,G3V,L5V '[Leu-5]-Enkephalin' ? 2 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 1 ? ? ? ? 3 water nat water 18.015 5 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code YVVFV _entity_poly.pdbx_seq_one_letter_code_can YVVFV _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 TYR n 1 2 VAL n 1 3 VAL n 1 4 PHE n 1 5 VAL n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details synthesized # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight HOH non-polymer . WATER ? 'H2 O' 18.015 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 TYR 1 -2 -2 TYR TYR A . n A 1 2 VAL 2 -1 -1 VAL VAL A . n A 1 3 VAL 3 0 0 VAL VAL A . n A 1 4 PHE 4 1 1 PHE PHE A . n A 1 5 VAL 5 2 2 VAL VAL A . n B 1 1 TYR 1 -2 -2 TYR TYR B . n B 1 2 VAL 2 -1 -1 VAL VAL B . n B 1 3 VAL 3 0 0 VAL VAL B . n B 1 4 PHE 4 1 1 PHE PHE B . n B 1 5 VAL 5 2 2 VAL VAL B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MPD 1 101 1 MPD MPD A . D 3 HOH 1 201 3 HOH HOH A . D 3 HOH 2 202 4 HOH HOH A . D 3 HOH 3 203 5 HOH HOH A . E 3 HOH 1 101 1 HOH HOH B . E 3 HOH 2 102 2 HOH HOH B . # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 2 PHENIX 1.8.2_1309 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 3 PDB_EXTRACT 3.14 'Dec. 10, 2013' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 SHELXD . ? ? ? ? phasing ? ? ? # _cell.length_a 9.750 _cell.length_b 21.380 _cell.length_c 19.050 _cell.angle_alpha 90.000 _cell.angle_beta 93.170 _cell.angle_gamma 90.000 _cell.entry_id 4OLR _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.entry_id 4OLR _symmetry.Int_Tables_number 4 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 4OLR _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.58 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 22.35 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details ;reservoir contained 15% MPD, 0.1M Sodium Cacodylate, 0.1M Magnesium Acetate, pH 6.5, vapor diffusion, hanging drop, temperature 298K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2013-08-08 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9791 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 24-ID-E' _diffrn_source.pdbx_wavelength_list 0.9791 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 24-ID-E # _reflns.entry_id 4OLR _reflns.d_resolution_high 1.100 _reflns.number_obs 3191 _reflns.pdbx_Rmerge_I_obs 0.212 _reflns.pdbx_netI_over_sigmaI 5.910 _reflns.percent_possible_obs 98.400 _reflns.B_iso_Wilson_estimate 5.600 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 19.02 _reflns.number_all 3191 _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy 6.65 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.100 1.130 901 ? 203 0.769 1.500 ? ? ? ? ? 90.200 1 1 1.130 1.160 1388 ? 232 0.974 1.700 ? ? ? ? ? 97.500 2 1 1.160 1.190 1505 ? 219 0.867 2.150 ? ? ? ? ? 97.300 3 1 1.190 1.230 1526 ? 224 0.904 2.000 ? ? ? ? ? 98.700 4 1 1.230 1.270 1400 ? 200 0.686 2.620 ? ? ? ? ? 97.600 5 1 1.270 1.320 1358 ? 197 0.559 3.070 ? ? ? ? ? 99.000 6 1 1.320 1.360 1432 ? 209 0.468 3.720 ? ? ? ? ? 98.600 7 1 1.360 1.420 1255 ? 182 0.459 3.970 ? ? ? ? ? 99.500 8 1 1.420 1.480 1252 ? 182 0.405 4.510 ? ? ? ? ? 99.500 9 1 1.480 1.560 1256 ? 181 0.272 6.050 ? ? ? ? ? 99.500 10 1 1.560 1.640 1142 ? 164 0.230 6.650 ? ? ? ? ? 100.000 11 1 1.640 1.740 1086 ? 155 0.209 7.390 ? ? ? ? ? 100.000 12 1 1.740 1.860 1021 ? 147 0.175 9.100 ? ? ? ? ? 100.000 13 1 1.860 2.010 1011 ? 148 0.146 10.960 ? ? ? ? ? 100.000 14 1 2.010 2.200 836 ? 122 0.117 12.150 ? ? ? ? ? 100.000 15 1 2.200 2.460 808 ? 124 0.096 12.720 ? ? ? ? ? 100.000 16 1 2.460 2.840 668 ? 98 0.111 13.640 ? ? ? ? ? 100.000 17 1 2.840 3.480 657 ? 93 0.100 14.760 ? ? ? ? ? 100.000 18 1 3.480 4.920 506 ? 73 0.099 16.200 ? ? ? ? ? 98.600 19 1 4.920 ? 236 ? 38 0.095 14.080 ? ? ? ? ? 97.400 20 1 # _refine.entry_id 4OLR _refine.ls_d_res_high 1.1000 _refine.ls_d_res_low 19.02 _refine.pdbx_ls_sigma_F 1.380 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.0500 _refine.ls_number_reflns_obs 3170 _refine.ls_number_reflns_all 3170 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details Random _refine.details ? _refine.ls_R_factor_all 0.1532 _refine.ls_R_factor_obs 0.1532 _refine.ls_R_factor_R_work 0.1497 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.1871 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 9.9700 _refine.ls_number_reflns_R_free 316 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 8.3600 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.0900 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'AB INITIO PHASING' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8699 _refine.B_iso_max 31.870 _refine.B_iso_min 3.710 _refine.pdbx_overall_phase_error 19.8700 _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 90 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 8 _refine_hist.number_atoms_solvent 5 _refine_hist.number_atoms_total 103 _refine_hist.d_res_high 1.1000 _refine_hist.d_res_low 19.02 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 99 0.010 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 136 1.376 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 17 0.104 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 14 0.005 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 28 10.531 ? ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 1.1002 1.3861 2 97.0000 1397 . 0.2277 0.2723 . 155 . 1552 . . 'X-RAY DIFFRACTION' 1.3861 19.0238 2 100.0000 1457 . 0.1140 0.1451 . 161 . 1618 . . 'X-RAY DIFFRACTION' # _struct.entry_id 4OLR _struct.title '[Leu-5]-Enkephalin mutant - YVVFV' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4OLR _struct_keywords.text 'amyloid-like protofibril, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4OLR _struct_ref.pdbx_db_accession 4OLR _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4OLR A 1 ? 5 ? 4OLR -2 ? 2 ? -2 2 2 1 4OLR B 1 ? 5 ? 4OLR -2 ? 2 ? -2 2 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 1_655 x+1,y,z 1.0000000000 0.0000000000 0.0000000000 9.7500000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 1_755 x+2,y,z 1.0000000000 0.0000000000 0.0000000000 19.5000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 2_555 -x,y+1/2,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 10.6900000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 5 'crystal symmetry operation' 2_655 -x+1,y+1/2,-z -1.0000000000 0.0000000000 0.0000000000 9.7500000000 0.0000000000 1.0000000000 0.0000000000 10.6900000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 6 'crystal symmetry operation' 2_755 -x+2,y+1/2,-z -1.0000000000 0.0000000000 0.0000000000 19.5000000000 0.0000000000 1.0000000000 0.0000000000 10.6900000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.details ;;The biological unit is a pair of beta sheets. One sheet is constructed from chains A and B with unit cell translations along the a direction (i.e. X+1,Y,Z; X+2,Y,Z; X+3,Y,Z, etc.). The second sheet is constructed from -X,1/2+Y,-Z; 1-X,1/2+Y,-Z; 2-X,1/2+Y,-Z; etc.) ; # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 2 ? PHE A 4 ? VAL A -1 PHE A 1 A 2 VAL B 2 ? PHE B 4 ? VAL B -1 PHE B 1 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id PHE _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 4 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id PHE _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 1 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id VAL _pdbx_struct_sheet_hbond.range_2_label_asym_id B _pdbx_struct_sheet_hbond.range_2_label_seq_id 2 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id VAL _pdbx_struct_sheet_hbond.range_2_auth_asym_id B _pdbx_struct_sheet_hbond.range_2_auth_seq_id -1 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id MPD _struct_site.pdbx_auth_seq_id 101 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 2 _struct_site.details 'BINDING SITE FOR RESIDUE MPD A 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 TYR A 1 ? TYR A -2 . ? 1_555 ? 2 AC1 2 TYR B 1 ? TYR B -2 . ? 1_455 ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal HOH O O N N 1 HOH H1 H N N 2 HOH H2 H N N 3 MPD C1 C N N 4 MPD C2 C N N 5 MPD O2 O N N 6 MPD CM C N N 7 MPD C3 C N N 8 MPD C4 C N S 9 MPD O4 O N N 10 MPD C5 C N N 11 MPD H11 H N N 12 MPD H12 H N N 13 MPD H13 H N N 14 MPD HO2 H N N 15 MPD HM1 H N N 16 MPD HM2 H N N 17 MPD HM3 H N N 18 MPD H31 H N N 19 MPD H32 H N N 20 MPD H4 H N N 21 MPD HO4 H N N 22 MPD H51 H N N 23 MPD H52 H N N 24 MPD H53 H N N 25 PHE N N N N 26 PHE CA C N S 27 PHE C C N N 28 PHE O O N N 29 PHE CB C N N 30 PHE CG C Y N 31 PHE CD1 C Y N 32 PHE CD2 C Y N 33 PHE CE1 C Y N 34 PHE CE2 C Y N 35 PHE CZ C Y N 36 PHE OXT O N N 37 PHE H H N N 38 PHE H2 H N N 39 PHE HA H N N 40 PHE HB2 H N N 41 PHE HB3 H N N 42 PHE HD1 H N N 43 PHE HD2 H N N 44 PHE HE1 H N N 45 PHE HE2 H N N 46 PHE HZ H N N 47 PHE HXT H N N 48 TYR N N N N 49 TYR CA C N S 50 TYR C C N N 51 TYR O O N N 52 TYR CB C N N 53 TYR CG C Y N 54 TYR CD1 C Y N 55 TYR CD2 C Y N 56 TYR CE1 C Y N 57 TYR CE2 C Y N 58 TYR CZ C Y N 59 TYR OH O N N 60 TYR OXT O N N 61 TYR H H N N 62 TYR H2 H N N 63 TYR HA H N N 64 TYR HB2 H N N 65 TYR HB3 H N N 66 TYR HD1 H N N 67 TYR HD2 H N N 68 TYR HE1 H N N 69 TYR HE2 H N N 70 TYR HH H N N 71 TYR HXT H N N 72 VAL N N N N 73 VAL CA C N S 74 VAL C C N N 75 VAL O O N N 76 VAL CB C N N 77 VAL CG1 C N N 78 VAL CG2 C N N 79 VAL OXT O N N 80 VAL H H N N 81 VAL H2 H N N 82 VAL HA H N N 83 VAL HB H N N 84 VAL HG11 H N N 85 VAL HG12 H N N 86 VAL HG13 H N N 87 VAL HG21 H N N 88 VAL HG22 H N N 89 VAL HG23 H N N 90 VAL HXT H N N 91 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal HOH O H1 sing N N 1 HOH O H2 sing N N 2 MPD C1 C2 sing N N 3 MPD C1 H11 sing N N 4 MPD C1 H12 sing N N 5 MPD C1 H13 sing N N 6 MPD C2 O2 sing N N 7 MPD C2 CM sing N N 8 MPD C2 C3 sing N N 9 MPD O2 HO2 sing N N 10 MPD CM HM1 sing N N 11 MPD CM HM2 sing N N 12 MPD CM HM3 sing N N 13 MPD C3 C4 sing N N 14 MPD C3 H31 sing N N 15 MPD C3 H32 sing N N 16 MPD C4 O4 sing N N 17 MPD C4 C5 sing N N 18 MPD C4 H4 sing N N 19 MPD O4 HO4 sing N N 20 MPD C5 H51 sing N N 21 MPD C5 H52 sing N N 22 MPD C5 H53 sing N N 23 PHE N CA sing N N 24 PHE N H sing N N 25 PHE N H2 sing N N 26 PHE CA C sing N N 27 PHE CA CB sing N N 28 PHE CA HA sing N N 29 PHE C O doub N N 30 PHE C OXT sing N N 31 PHE CB CG sing N N 32 PHE CB HB2 sing N N 33 PHE CB HB3 sing N N 34 PHE CG CD1 doub Y N 35 PHE CG CD2 sing Y N 36 PHE CD1 CE1 sing Y N 37 PHE CD1 HD1 sing N N 38 PHE CD2 CE2 doub Y N 39 PHE CD2 HD2 sing N N 40 PHE CE1 CZ doub Y N 41 PHE CE1 HE1 sing N N 42 PHE CE2 CZ sing Y N 43 PHE CE2 HE2 sing N N 44 PHE CZ HZ sing N N 45 PHE OXT HXT sing N N 46 TYR N CA sing N N 47 TYR N H sing N N 48 TYR N H2 sing N N 49 TYR CA C sing N N 50 TYR CA CB sing N N 51 TYR CA HA sing N N 52 TYR C O doub N N 53 TYR C OXT sing N N 54 TYR CB CG sing N N 55 TYR CB HB2 sing N N 56 TYR CB HB3 sing N N 57 TYR CG CD1 doub Y N 58 TYR CG CD2 sing Y N 59 TYR CD1 CE1 sing Y N 60 TYR CD1 HD1 sing N N 61 TYR CD2 CE2 doub Y N 62 TYR CD2 HD2 sing N N 63 TYR CE1 CZ doub Y N 64 TYR CE1 HE1 sing N N 65 TYR CE2 CZ sing Y N 66 TYR CE2 HE2 sing N N 67 TYR CZ OH sing N N 68 TYR OH HH sing N N 69 TYR OXT HXT sing N N 70 VAL N CA sing N N 71 VAL N H sing N N 72 VAL N H2 sing N N 73 VAL CA C sing N N 74 VAL CA CB sing N N 75 VAL CA HA sing N N 76 VAL C O doub N N 77 VAL C OXT sing N N 78 VAL CB CG1 sing N N 79 VAL CB CG2 sing N N 80 VAL CB HB sing N N 81 VAL CG1 HG11 sing N N 82 VAL CG1 HG12 sing N N 83 VAL CG1 HG13 sing N N 84 VAL CG2 HG21 sing N N 85 VAL CG2 HG22 sing N N 86 VAL CG2 HG23 sing N N 87 VAL OXT HXT sing N N 88 # _atom_sites.entry_id 4OLR _atom_sites.fract_transf_matrix[1][1] 0.102564 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005671 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.046773 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.052574 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C H N O # loop_