data_4OM4 # _entry.id 4OM4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4OM4 pdb_00004om4 10.2210/pdb4om4/pdb RCSB RCSB084665 ? ? WWPDB D_1000084665 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-06-11 2 'Structure model' 1 1 2014-07-02 3 'Structure model' 1 2 2014-07-30 4 'Structure model' 1 3 2017-11-22 5 'Structure model' 1 4 2023-09-20 6 'Structure model' 1 5 2024-10-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Refinement description' 7 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_initial_refinement_model 6 6 'Structure model' pdbx_entry_details 7 6 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.entry_id 4OM4 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2014-01-26 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4OM5 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lin, C.C.' 1 'Chang, C.I.' 2 'Wu, W.G.' 3 # _citation.id primary _citation.title ;Endocytotic Routes of Cobra Cardiotoxins Depend on Spatial Distribution of Positively Charged and Hydrophobic Domains to Target Distinct Types of Sulfated Glycoconjugates on Cell Surface. ; _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 289 _citation.page_first 20170 _citation.page_last 20181 _citation.year 2014 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24898246 _citation.pdbx_database_id_DOI 10.1074/jbc.M114.557157 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lee, S.C.' 1 ? primary 'Lin, C.C.' 2 ? primary 'Wang, C.H.' 3 ? primary 'Wu, P.L.' 4 ? primary 'Huang, H.W.' 5 ? primary 'Chang, C.I.' 6 ? primary 'Wu, W.G.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Cytotoxin 2' 6760.242 5 ? ? 'UNP residues 22-81' ? 2 water nat water 18.015 92 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'CX2, Cardiotoxin 1A, Cardiotoxin analog II, CTX II, Cardiotoxin-A2, CTX-2, CTX-A2, CTX2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code LKCNKLVPLFYKTCPAGKNLCYKMFMVSNLTVPVKRGCIDVCPKNSALVKYVCCNTDRCN _entity_poly.pdbx_seq_one_letter_code_can LKCNKLVPLFYKTCPAGKNLCYKMFMVSNLTVPVKRGCIDVCPKNSALVKYVCCNTDRCN _entity_poly.pdbx_strand_id A,B,C,D,E _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LEU n 1 2 LYS n 1 3 CYS n 1 4 ASN n 1 5 LYS n 1 6 LEU n 1 7 VAL n 1 8 PRO n 1 9 LEU n 1 10 PHE n 1 11 TYR n 1 12 LYS n 1 13 THR n 1 14 CYS n 1 15 PRO n 1 16 ALA n 1 17 GLY n 1 18 LYS n 1 19 ASN n 1 20 LEU n 1 21 CYS n 1 22 TYR n 1 23 LYS n 1 24 MET n 1 25 PHE n 1 26 MET n 1 27 VAL n 1 28 SER n 1 29 ASN n 1 30 LEU n 1 31 THR n 1 32 VAL n 1 33 PRO n 1 34 VAL n 1 35 LYS n 1 36 ARG n 1 37 GLY n 1 38 CYS n 1 39 ILE n 1 40 ASP n 1 41 VAL n 1 42 CYS n 1 43 PRO n 1 44 LYS n 1 45 ASN n 1 46 SER n 1 47 ALA n 1 48 LEU n 1 49 VAL n 1 50 LYS n 1 51 TYR n 1 52 VAL n 1 53 CYS n 1 54 CYS n 1 55 ASN n 1 56 THR n 1 57 ASP n 1 58 ARG n 1 59 CYS n 1 60 ASN n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name 'Taiwan cobra' _entity_src_nat.pdbx_organism_scientific 'Naja atra' _entity_src_nat.pdbx_ncbi_taxonomy_id 8656 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion venom _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LEU 1 1 1 LEU LEU A . n A 1 2 LYS 2 2 2 LYS LYS A . n A 1 3 CYS 3 3 3 CYS CYS A . n A 1 4 ASN 4 4 4 ASN ASN A . n A 1 5 LYS 5 5 5 LYS LYS A . n A 1 6 LEU 6 6 6 LEU LEU A . n A 1 7 VAL 7 7 7 VAL VAL A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 LEU 9 9 9 LEU LEU A . n A 1 10 PHE 10 10 10 PHE PHE A . n A 1 11 TYR 11 11 11 TYR TYR A . n A 1 12 LYS 12 12 12 LYS LYS A . n A 1 13 THR 13 13 13 THR THR A . n A 1 14 CYS 14 14 14 CYS CYS A . n A 1 15 PRO 15 15 15 PRO PRO A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 LYS 18 18 18 LYS LYS A . n A 1 19 ASN 19 19 19 ASN ASN A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 CYS 21 21 21 CYS CYS A . n A 1 22 TYR 22 22 22 TYR TYR A . n A 1 23 LYS 23 23 23 LYS LYS A . n A 1 24 MET 24 24 24 MET MET A . n A 1 25 PHE 25 25 25 PHE PHE A . n A 1 26 MET 26 26 26 MET MET A . n A 1 27 VAL 27 27 27 VAL VAL A . n A 1 28 SER 28 28 28 SER SER A . n A 1 29 ASN 29 29 29 ASN ASN A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 PRO 33 33 33 PRO PRO A . n A 1 34 VAL 34 34 34 VAL VAL A . n A 1 35 LYS 35 35 35 LYS LYS A . n A 1 36 ARG 36 36 36 ARG ARG A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 CYS 38 38 38 CYS CYS A . n A 1 39 ILE 39 39 39 ILE ILE A . n A 1 40 ASP 40 40 40 ASP ASP A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 CYS 42 42 42 CYS CYS A . n A 1 43 PRO 43 43 43 PRO PRO A . n A 1 44 LYS 44 44 44 LYS LYS A . n A 1 45 ASN 45 45 45 ASN ASN A . n A 1 46 SER 46 46 46 SER SER A . n A 1 47 ALA 47 47 47 ALA ALA A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 VAL 49 49 49 VAL VAL A . n A 1 50 LYS 50 50 50 LYS LYS A . n A 1 51 TYR 51 51 51 TYR TYR A . n A 1 52 VAL 52 52 52 VAL VAL A . n A 1 53 CYS 53 53 53 CYS CYS A . n A 1 54 CYS 54 54 54 CYS CYS A . n A 1 55 ASN 55 55 55 ASN ASN A . n A 1 56 THR 56 56 56 THR THR A . n A 1 57 ASP 57 57 57 ASP ASP A . n A 1 58 ARG 58 58 58 ARG ARG A . n A 1 59 CYS 59 59 59 CYS CYS A . n A 1 60 ASN 60 60 60 ASN ASN A . n B 1 1 LEU 1 1 1 LEU LEU B . n B 1 2 LYS 2 2 2 LYS LYS B . n B 1 3 CYS 3 3 3 CYS CYS B . n B 1 4 ASN 4 4 4 ASN ASN B . n B 1 5 LYS 5 5 5 LYS LYS B . n B 1 6 LEU 6 6 6 LEU LEU B . n B 1 7 VAL 7 7 7 VAL VAL B . n B 1 8 PRO 8 8 8 PRO PRO B . n B 1 9 LEU 9 9 9 LEU LEU B . n B 1 10 PHE 10 10 10 PHE PHE B . n B 1 11 TYR 11 11 11 TYR TYR B . n B 1 12 LYS 12 12 12 LYS LYS B . n B 1 13 THR 13 13 13 THR THR B . n B 1 14 CYS 14 14 14 CYS CYS B . n B 1 15 PRO 15 15 15 PRO PRO B . n B 1 16 ALA 16 16 16 ALA ALA B . n B 1 17 GLY 17 17 17 GLY GLY B . n B 1 18 LYS 18 18 18 LYS LYS B . n B 1 19 ASN 19 19 19 ASN ASN B . n B 1 20 LEU 20 20 20 LEU LEU B . n B 1 21 CYS 21 21 21 CYS CYS B . n B 1 22 TYR 22 22 22 TYR TYR B . n B 1 23 LYS 23 23 23 LYS LYS B . n B 1 24 MET 24 24 24 MET MET B . n B 1 25 PHE 25 25 25 PHE PHE B . n B 1 26 MET 26 26 26 MET MET B . n B 1 27 VAL 27 27 27 VAL VAL B . n B 1 28 SER 28 28 28 SER SER B . n B 1 29 ASN 29 29 29 ASN ASN B . n B 1 30 LEU 30 30 30 LEU LEU B . n B 1 31 THR 31 31 31 THR THR B . n B 1 32 VAL 32 32 32 VAL VAL B . n B 1 33 PRO 33 33 33 PRO PRO B . n B 1 34 VAL 34 34 34 VAL VAL B . n B 1 35 LYS 35 35 35 LYS LYS B . n B 1 36 ARG 36 36 36 ARG ARG B . n B 1 37 GLY 37 37 37 GLY GLY B . n B 1 38 CYS 38 38 38 CYS CYS B . n B 1 39 ILE 39 39 39 ILE ILE B . n B 1 40 ASP 40 40 40 ASP ASP B . n B 1 41 VAL 41 41 41 VAL VAL B . n B 1 42 CYS 42 42 42 CYS CYS B . n B 1 43 PRO 43 43 43 PRO PRO B . n B 1 44 LYS 44 44 44 LYS LYS B . n B 1 45 ASN 45 45 45 ASN ASN B . n B 1 46 SER 46 46 46 SER SER B . n B 1 47 ALA 47 47 47 ALA ALA B . n B 1 48 LEU 48 48 48 LEU LEU B . n B 1 49 VAL 49 49 49 VAL VAL B . n B 1 50 LYS 50 50 50 LYS LYS B . n B 1 51 TYR 51 51 51 TYR TYR B . n B 1 52 VAL 52 52 52 VAL VAL B . n B 1 53 CYS 53 53 53 CYS CYS B . n B 1 54 CYS 54 54 54 CYS CYS B . n B 1 55 ASN 55 55 55 ASN ASN B . n B 1 56 THR 56 56 56 THR THR B . n B 1 57 ASP 57 57 57 ASP ASP B . n B 1 58 ARG 58 58 58 ARG ARG B . n B 1 59 CYS 59 59 59 CYS CYS B . n B 1 60 ASN 60 60 60 ASN ASN B . n C 1 1 LEU 1 1 1 LEU LEU C . n C 1 2 LYS 2 2 2 LYS LYS C . n C 1 3 CYS 3 3 3 CYS CYS C . n C 1 4 ASN 4 4 4 ASN ASN C . n C 1 5 LYS 5 5 5 LYS LYS C . n C 1 6 LEU 6 6 6 LEU LEU C . n C 1 7 VAL 7 7 7 VAL VAL C . n C 1 8 PRO 8 8 8 PRO PRO C . n C 1 9 LEU 9 9 9 LEU LEU C . n C 1 10 PHE 10 10 10 PHE PHE C . n C 1 11 TYR 11 11 11 TYR TYR C . n C 1 12 LYS 12 12 12 LYS LYS C . n C 1 13 THR 13 13 13 THR THR C . n C 1 14 CYS 14 14 14 CYS CYS C . n C 1 15 PRO 15 15 15 PRO PRO C . n C 1 16 ALA 16 16 16 ALA ALA C . n C 1 17 GLY 17 17 17 GLY GLY C . n C 1 18 LYS 18 18 18 LYS LYS C . n C 1 19 ASN 19 19 19 ASN ASN C . n C 1 20 LEU 20 20 20 LEU LEU C . n C 1 21 CYS 21 21 21 CYS CYS C . n C 1 22 TYR 22 22 22 TYR TYR C . n C 1 23 LYS 23 23 23 LYS LYS C . n C 1 24 MET 24 24 24 MET MET C . n C 1 25 PHE 25 25 25 PHE PHE C . n C 1 26 MET 26 26 26 MET MET C . n C 1 27 VAL 27 27 27 VAL VAL C . n C 1 28 SER 28 28 28 SER SER C . n C 1 29 ASN 29 29 29 ASN ASN C . n C 1 30 LEU 30 30 30 LEU LEU C . n C 1 31 THR 31 31 31 THR THR C . n C 1 32 VAL 32 32 32 VAL VAL C . n C 1 33 PRO 33 33 33 PRO PRO C . n C 1 34 VAL 34 34 34 VAL VAL C . n C 1 35 LYS 35 35 35 LYS LYS C . n C 1 36 ARG 36 36 36 ARG ARG C . n C 1 37 GLY 37 37 37 GLY GLY C . n C 1 38 CYS 38 38 38 CYS CYS C . n C 1 39 ILE 39 39 39 ILE ILE C . n C 1 40 ASP 40 40 40 ASP ASP C . n C 1 41 VAL 41 41 41 VAL VAL C . n C 1 42 CYS 42 42 42 CYS CYS C . n C 1 43 PRO 43 43 43 PRO PRO C . n C 1 44 LYS 44 44 44 LYS LYS C . n C 1 45 ASN 45 45 45 ASN ASN C . n C 1 46 SER 46 46 46 SER SER C . n C 1 47 ALA 47 47 47 ALA ALA C . n C 1 48 LEU 48 48 48 LEU LEU C . n C 1 49 VAL 49 49 49 VAL VAL C . n C 1 50 LYS 50 50 50 LYS LYS C . n C 1 51 TYR 51 51 51 TYR TYR C . n C 1 52 VAL 52 52 52 VAL VAL C . n C 1 53 CYS 53 53 53 CYS CYS C . n C 1 54 CYS 54 54 54 CYS CYS C . n C 1 55 ASN 55 55 55 ASN ASN C . n C 1 56 THR 56 56 56 THR THR C . n C 1 57 ASP 57 57 57 ASP ASP C . n C 1 58 ARG 58 58 58 ARG ARG C . n C 1 59 CYS 59 59 59 CYS CYS C . n C 1 60 ASN 60 60 60 ASN ASN C . n D 1 1 LEU 1 1 1 LEU LEU D . n D 1 2 LYS 2 2 2 LYS LYS D . n D 1 3 CYS 3 3 3 CYS CYS D . n D 1 4 ASN 4 4 4 ASN ASN D . n D 1 5 LYS 5 5 5 LYS LYS D . n D 1 6 LEU 6 6 6 LEU LEU D . n D 1 7 VAL 7 7 7 VAL VAL D . n D 1 8 PRO 8 8 8 PRO PRO D . n D 1 9 LEU 9 9 9 LEU LEU D . n D 1 10 PHE 10 10 10 PHE PHE D . n D 1 11 TYR 11 11 11 TYR TYR D . n D 1 12 LYS 12 12 12 LYS LYS D . n D 1 13 THR 13 13 13 THR THR D . n D 1 14 CYS 14 14 14 CYS CYS D . n D 1 15 PRO 15 15 15 PRO PRO D . n D 1 16 ALA 16 16 16 ALA ALA D . n D 1 17 GLY 17 17 17 GLY GLY D . n D 1 18 LYS 18 18 18 LYS LYS D . n D 1 19 ASN 19 19 19 ASN ASN D . n D 1 20 LEU 20 20 20 LEU LEU D . n D 1 21 CYS 21 21 21 CYS CYS D . n D 1 22 TYR 22 22 22 TYR TYR D . n D 1 23 LYS 23 23 23 LYS LYS D . n D 1 24 MET 24 24 24 MET MET D . n D 1 25 PHE 25 25 25 PHE PHE D . n D 1 26 MET 26 26 26 MET MET D . n D 1 27 VAL 27 27 27 VAL VAL D . n D 1 28 SER 28 28 28 SER SER D . n D 1 29 ASN 29 29 29 ASN ASN D . n D 1 30 LEU 30 30 30 LEU LEU D . n D 1 31 THR 31 31 31 THR THR D . n D 1 32 VAL 32 32 32 VAL VAL D . n D 1 33 PRO 33 33 33 PRO PRO D . n D 1 34 VAL 34 34 34 VAL VAL D . n D 1 35 LYS 35 35 35 LYS LYS D . n D 1 36 ARG 36 36 36 ARG ARG D . n D 1 37 GLY 37 37 37 GLY GLY D . n D 1 38 CYS 38 38 38 CYS CYS D . n D 1 39 ILE 39 39 39 ILE ILE D . n D 1 40 ASP 40 40 40 ASP ASP D . n D 1 41 VAL 41 41 41 VAL VAL D . n D 1 42 CYS 42 42 42 CYS CYS D . n D 1 43 PRO 43 43 43 PRO PRO D . n D 1 44 LYS 44 44 44 LYS LYS D . n D 1 45 ASN 45 45 45 ASN ASN D . n D 1 46 SER 46 46 46 SER SER D . n D 1 47 ALA 47 47 47 ALA ALA D . n D 1 48 LEU 48 48 48 LEU LEU D . n D 1 49 VAL 49 49 49 VAL VAL D . n D 1 50 LYS 50 50 50 LYS LYS D . n D 1 51 TYR 51 51 51 TYR TYR D . n D 1 52 VAL 52 52 52 VAL VAL D . n D 1 53 CYS 53 53 53 CYS CYS D . n D 1 54 CYS 54 54 54 CYS CYS D . n D 1 55 ASN 55 55 55 ASN ASN D . n D 1 56 THR 56 56 56 THR THR D . n D 1 57 ASP 57 57 57 ASP ASP D . n D 1 58 ARG 58 58 58 ARG ARG D . n D 1 59 CYS 59 59 59 CYS CYS D . n D 1 60 ASN 60 60 60 ASN ASN D . n E 1 1 LEU 1 1 1 LEU LEU E . n E 1 2 LYS 2 2 2 LYS LYS E . n E 1 3 CYS 3 3 3 CYS CYS E . n E 1 4 ASN 4 4 4 ASN ASN E . n E 1 5 LYS 5 5 5 LYS LYS E . n E 1 6 LEU 6 6 6 LEU LEU E . n E 1 7 VAL 7 7 7 VAL VAL E . n E 1 8 PRO 8 8 8 PRO PRO E . n E 1 9 LEU 9 9 9 LEU LEU E . n E 1 10 PHE 10 10 10 PHE PHE E . n E 1 11 TYR 11 11 11 TYR TYR E . n E 1 12 LYS 12 12 12 LYS LYS E . n E 1 13 THR 13 13 13 THR THR E . n E 1 14 CYS 14 14 14 CYS CYS E . n E 1 15 PRO 15 15 15 PRO PRO E . n E 1 16 ALA 16 16 16 ALA ALA E . n E 1 17 GLY 17 17 17 GLY GLY E . n E 1 18 LYS 18 18 18 LYS LYS E . n E 1 19 ASN 19 19 19 ASN ASN E . n E 1 20 LEU 20 20 20 LEU LEU E . n E 1 21 CYS 21 21 21 CYS CYS E . n E 1 22 TYR 22 22 22 TYR TYR E . n E 1 23 LYS 23 23 23 LYS LYS E . n E 1 24 MET 24 24 24 MET MET E . n E 1 25 PHE 25 25 25 PHE PHE E . n E 1 26 MET 26 26 26 MET MET E . n E 1 27 VAL 27 27 27 VAL VAL E . n E 1 28 SER 28 28 28 SER SER E . n E 1 29 ASN 29 29 29 ASN ASN E . n E 1 30 LEU 30 30 30 LEU LEU E . n E 1 31 THR 31 31 31 THR THR E . n E 1 32 VAL 32 32 32 VAL VAL E . n E 1 33 PRO 33 33 33 PRO PRO E . n E 1 34 VAL 34 34 34 VAL VAL E . n E 1 35 LYS 35 35 35 LYS LYS E . n E 1 36 ARG 36 36 36 ARG ARG E . n E 1 37 GLY 37 37 37 GLY GLY E . n E 1 38 CYS 38 38 38 CYS CYS E . n E 1 39 ILE 39 39 39 ILE ILE E . n E 1 40 ASP 40 40 40 ASP ASP E . n E 1 41 VAL 41 41 41 VAL VAL E . n E 1 42 CYS 42 42 42 CYS CYS E . n E 1 43 PRO 43 43 43 PRO PRO E . n E 1 44 LYS 44 44 44 LYS LYS E . n E 1 45 ASN 45 45 45 ASN ASN E . n E 1 46 SER 46 46 46 SER SER E . n E 1 47 ALA 47 47 47 ALA ALA E . n E 1 48 LEU 48 48 48 LEU LEU E . n E 1 49 VAL 49 49 49 VAL VAL E . n E 1 50 LYS 50 50 50 LYS LYS E . n E 1 51 TYR 51 51 51 TYR TYR E . n E 1 52 VAL 52 52 52 VAL VAL E . n E 1 53 CYS 53 53 53 CYS CYS E . n E 1 54 CYS 54 54 54 CYS CYS E . n E 1 55 ASN 55 55 55 ASN ASN E . n E 1 56 THR 56 56 56 THR THR E . n E 1 57 ASP 57 57 57 ASP ASP E . n E 1 58 ARG 58 58 58 ARG ARG E . n E 1 59 CYS 59 59 59 CYS CYS E . n E 1 60 ASN 60 60 60 ASN ASN E . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 HOH 1 101 101 HOH HOH A . F 2 HOH 2 102 102 HOH HOH A . F 2 HOH 3 103 103 HOH HOH A . F 2 HOH 4 104 104 HOH HOH A . F 2 HOH 5 105 105 HOH HOH A . F 2 HOH 6 106 106 HOH HOH A . F 2 HOH 7 107 107 HOH HOH A . F 2 HOH 8 108 108 HOH HOH A . F 2 HOH 9 109 109 HOH HOH A . F 2 HOH 10 110 110 HOH HOH A . F 2 HOH 11 111 111 HOH HOH A . F 2 HOH 12 112 112 HOH HOH A . F 2 HOH 13 113 113 HOH HOH A . F 2 HOH 14 114 114 HOH HOH A . F 2 HOH 15 115 115 HOH HOH A . F 2 HOH 16 116 116 HOH HOH A . F 2 HOH 17 117 117 HOH HOH A . F 2 HOH 18 118 118 HOH HOH A . F 2 HOH 19 119 119 HOH HOH A . F 2 HOH 20 120 120 HOH HOH A . G 2 HOH 1 101 101 HOH HOH B . G 2 HOH 2 102 102 HOH HOH B . G 2 HOH 3 103 103 HOH HOH B . G 2 HOH 4 104 104 HOH HOH B . G 2 HOH 5 105 105 HOH HOH B . G 2 HOH 6 106 106 HOH HOH B . G 2 HOH 7 107 107 HOH HOH B . G 2 HOH 8 108 108 HOH HOH B . G 2 HOH 9 109 109 HOH HOH B . G 2 HOH 10 110 110 HOH HOH B . G 2 HOH 11 111 111 HOH HOH B . G 2 HOH 12 112 112 HOH HOH B . G 2 HOH 13 113 113 HOH HOH B . G 2 HOH 14 114 114 HOH HOH B . G 2 HOH 15 115 115 HOH HOH B . G 2 HOH 16 116 116 HOH HOH B . G 2 HOH 17 117 117 HOH HOH B . G 2 HOH 18 118 118 HOH HOH B . G 2 HOH 19 119 119 HOH HOH B . G 2 HOH 20 120 120 HOH HOH B . G 2 HOH 21 121 121 HOH HOH B . G 2 HOH 22 122 122 HOH HOH B . H 2 HOH 1 101 101 HOH HOH C . H 2 HOH 2 102 102 HOH HOH C . H 2 HOH 3 103 103 HOH HOH C . H 2 HOH 4 104 104 HOH HOH C . H 2 HOH 5 105 105 HOH HOH C . H 2 HOH 6 106 106 HOH HOH C . H 2 HOH 7 107 107 HOH HOH C . H 2 HOH 8 108 108 HOH HOH C . H 2 HOH 9 109 109 HOH HOH C . H 2 HOH 10 110 110 HOH HOH C . H 2 HOH 11 111 111 HOH HOH C . H 2 HOH 12 112 112 HOH HOH C . H 2 HOH 13 113 113 HOH HOH C . H 2 HOH 14 114 114 HOH HOH C . H 2 HOH 15 115 115 HOH HOH C . H 2 HOH 16 116 116 HOH HOH C . H 2 HOH 17 117 117 HOH HOH C . H 2 HOH 18 118 118 HOH HOH C . I 2 HOH 1 101 101 HOH HOH D . I 2 HOH 2 102 102 HOH HOH D . I 2 HOH 3 103 103 HOH HOH D . I 2 HOH 4 104 104 HOH HOH D . I 2 HOH 5 105 105 HOH HOH D . I 2 HOH 6 106 106 HOH HOH D . I 2 HOH 7 107 107 HOH HOH D . I 2 HOH 8 108 108 HOH HOH D . I 2 HOH 9 109 109 HOH HOH D . I 2 HOH 10 110 110 HOH HOH D . I 2 HOH 11 111 111 HOH HOH D . I 2 HOH 12 112 112 HOH HOH D . I 2 HOH 13 113 113 HOH HOH D . I 2 HOH 14 114 114 HOH HOH D . I 2 HOH 15 115 115 HOH HOH D . I 2 HOH 16 116 116 HOH HOH D . I 2 HOH 17 117 117 HOH HOH D . I 2 HOH 18 118 118 HOH HOH D . I 2 HOH 19 119 119 HOH HOH D . I 2 HOH 20 120 120 HOH HOH D . I 2 HOH 21 121 121 HOH HOH D . I 2 HOH 22 122 122 HOH HOH D . I 2 HOH 23 123 123 HOH HOH D . J 2 HOH 1 101 101 HOH HOH E . J 2 HOH 2 102 102 HOH HOH E . J 2 HOH 3 103 103 HOH HOH E . J 2 HOH 4 104 104 HOH HOH E . J 2 HOH 5 105 105 HOH HOH E . J 2 HOH 6 106 106 HOH HOH E . J 2 HOH 7 107 107 HOH HOH E . J 2 HOH 8 108 108 HOH HOH E . J 2 HOH 9 109 109 HOH HOH E . # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 REFMAC 5.7.0032 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.14 'Dec. 10, 2013' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 6 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 7 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 8 PHASER . ? ? ? ? phasing ? ? ? # _cell.entry_id 4OM4 _cell.length_a 107.412 _cell.length_b 107.412 _cell.length_c 100.256 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 40 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4OM4 _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # _exptl.entry_id 4OM4 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 4.28 _exptl_crystal.density_percent_sol 71.25 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.2 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '5.5 M ammonium nitrate, 0.1 M Bis-Tris, pH 7.2, VAPOR DIFFUSION, HANGING DROP, temperature 291K' # _diffrn.id 1 _diffrn.ambient_temp 200 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2009-08-04 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'LN2-cooled, fixed-exit double crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSRRC BEAMLINE BL13B1' _diffrn_source.pdbx_synchrotron_site NSRRC _diffrn_source.pdbx_synchrotron_beamline BL13B1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4OM4 _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 30.0 _reflns.d_resolution_high 2.740 _reflns.number_obs 15865 _reflns.number_all 15886 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.103 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 13.2 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 15.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared 1 1 2.740 2.840 100.0 0.494 ? ? 15.0 ? ? ? ? ? ? 1 2 2.840 2.950 100.0 0.380 ? ? 15.7 ? ? ? ? ? ? 1 3 2.950 3.090 100.0 0.294 ? ? 16.0 ? ? ? ? ? ? 1 4 3.090 3.250 100.0 0.181 ? ? 16.1 ? ? ? ? ? ? 1 5 3.250 3.450 100.0 0.139 ? ? 16.0 ? ? ? ? ? ? 1 6 3.450 3.720 100.0 0.103 ? ? 16.0 ? ? ? ? ? ? 1 7 3.720 4.090 100.0 0.081 ? ? 15.9 ? ? ? ? ? ? 1 8 4.090 4.680 100.0 0.064 ? ? 15.7 ? ? ? ? ? ? 1 9 4.680 5.890 100.0 0.071 ? ? 15.4 ? ? ? ? ? ? 1 10 5.890 30.000 99.4 0.059 ? ? 13.9 ? ? ? ? ? ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4OM4 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 15030 _refine.ls_number_reflns_all 15886 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 25.62 _refine.ls_d_res_high 2.74 _refine.ls_percent_reflns_obs 99.58 _refine.ls_R_factor_obs 0.19979 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.19660 _refine.ls_R_factor_R_free 0.25960 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 792 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.940 _refine.correlation_coeff_Fo_to_Fc_free 0.894 _refine.B_iso_mean 44.846 _refine.aniso_B[1][1] -2.31 _refine.aniso_B[2][2] -2.31 _refine.aniso_B[3][3] 4.62 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB ENTRY 2BHI' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.369 _refine.pdbx_overall_ESU_R_Free 0.291 _refine.overall_SU_ML 0.205 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 10.183 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2325 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 92 _refine_hist.number_atoms_total 2417 _refine_hist.d_res_high 2.74 _refine_hist.d_res_low 25.62 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.015 0.020 ? 2385 'X-RAY DIFFRACTION' ? r_bond_other_d 0.003 0.020 ? 2430 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.914 2.003 ? 3230 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.877 3.014 ? 5575 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.743 5.000 ? 295 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 32.630 24.000 ? 75 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 23.129 15.000 ? 455 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 24.847 15.000 ? 10 'X-RAY DIFFRACTION' ? r_chiral_restr 0.098 0.200 ? 375 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.008 0.021 ? 2565 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 485 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 3.368 4.261 ? 1195 'X-RAY DIFFRACTION' ? r_mcbond_other 3.360 4.260 ? 1194 'X-RAY DIFFRACTION' ? r_mcangle_it 5.152 6.384 ? 1485 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 3.746 4.631 ? 1189 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.745 _refine_ls_shell.d_res_low 2.816 _refine_ls_shell.number_reflns_R_work 1063 _refine_ls_shell.R_factor_R_work 0.308 _refine_ls_shell.percent_reflns_obs 96.79 _refine_ls_shell.R_factor_R_free 0.431 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 52 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 4OM4 _struct.title 'Crystal structure of CTX A2 from Taiwan Cobra (Naja naja atra)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4OM4 _struct_keywords.pdbx_keywords TOXIN _struct_keywords.text 'Five beta sheets, three functional loops, endocytosis, heparin, heparan sulfate, TOXIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CTXA2_NAJAT _struct_ref.pdbx_db_accession P01442 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code LKCNKLVPLFYKTCPAGKNLCYKMFMVSNLTVPVKRGCIDVCPKNSALVKYVCCNTDRCN _struct_ref.pdbx_align_begin 22 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4OM4 A 1 ? 60 ? P01442 22 ? 81 ? 1 60 2 1 4OM4 B 1 ? 60 ? P01442 22 ? 81 ? 1 60 3 1 4OM4 C 1 ? 60 ? P01442 22 ? 81 ? 1 60 4 1 4OM4 D 1 ? 60 ? P01442 22 ? 81 ? 1 60 5 1 4OM4 E 1 ? 60 ? P01442 22 ? 81 ? 1 60 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details 'The biological assembly is an oligomer.' # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 3 SG ? ? ? 1_555 A CYS 21 SG ? ? A CYS 3 A CYS 21 1_555 ? ? ? ? ? ? ? 1.980 ? ? disulf2 disulf ? ? A CYS 14 SG ? ? ? 1_555 A CYS 38 SG ? ? A CYS 14 A CYS 38 1_555 ? ? ? ? ? ? ? 2.007 ? ? disulf3 disulf ? ? A CYS 42 SG ? ? ? 1_555 A CYS 53 SG ? ? A CYS 42 A CYS 53 1_555 ? ? ? ? ? ? ? 2.016 ? ? disulf4 disulf ? ? A CYS 54 SG ? ? ? 1_555 A CYS 59 SG ? ? A CYS 54 A CYS 59 1_555 ? ? ? ? ? ? ? 1.984 ? ? disulf5 disulf ? ? B CYS 3 SG ? ? ? 1_555 B CYS 21 SG ? ? B CYS 3 B CYS 21 1_555 ? ? ? ? ? ? ? 1.967 ? ? disulf6 disulf ? ? B CYS 14 SG ? ? ? 1_555 B CYS 38 SG ? ? B CYS 14 B CYS 38 1_555 ? ? ? ? ? ? ? 1.988 ? ? disulf7 disulf ? ? B CYS 42 SG ? ? ? 1_555 B CYS 53 SG ? ? B CYS 42 B CYS 53 1_555 ? ? ? ? ? ? ? 2.010 ? ? disulf8 disulf ? ? B CYS 54 SG ? ? ? 1_555 B CYS 59 SG ? ? B CYS 54 B CYS 59 1_555 ? ? ? ? ? ? ? 1.987 ? ? disulf9 disulf ? ? C CYS 3 SG ? ? ? 1_555 C CYS 21 SG ? ? C CYS 3 C CYS 21 1_555 ? ? ? ? ? ? ? 2.014 ? ? disulf10 disulf ? ? C CYS 14 SG ? ? ? 1_555 C CYS 38 SG ? ? C CYS 14 C CYS 38 1_555 ? ? ? ? ? ? ? 2.028 ? ? disulf11 disulf ? ? C CYS 42 SG ? ? ? 1_555 C CYS 53 SG ? ? C CYS 42 C CYS 53 1_555 ? ? ? ? ? ? ? 2.001 ? ? disulf12 disulf ? ? C CYS 54 SG ? ? ? 1_555 C CYS 59 SG ? ? C CYS 54 C CYS 59 1_555 ? ? ? ? ? ? ? 2.017 ? ? disulf13 disulf ? ? D CYS 3 SG ? ? ? 1_555 D CYS 21 SG ? ? D CYS 3 D CYS 21 1_555 ? ? ? ? ? ? ? 1.973 ? ? disulf14 disulf ? ? D CYS 14 SG ? ? ? 1_555 D CYS 38 SG ? ? D CYS 14 D CYS 38 1_555 ? ? ? ? ? ? ? 1.980 ? ? disulf15 disulf ? ? D CYS 42 SG ? ? ? 1_555 D CYS 53 SG ? ? D CYS 42 D CYS 53 1_555 ? ? ? ? ? ? ? 2.040 ? ? disulf16 disulf ? ? D CYS 54 SG ? ? ? 1_555 D CYS 59 SG ? ? D CYS 54 D CYS 59 1_555 ? ? ? ? ? ? ? 1.951 ? ? disulf17 disulf ? ? E CYS 3 SG ? ? ? 1_555 E CYS 21 SG ? ? E CYS 3 E CYS 21 1_555 ? ? ? ? ? ? ? 2.010 ? ? disulf18 disulf ? ? E CYS 14 SG ? ? ? 1_555 E CYS 38 SG ? ? E CYS 14 E CYS 38 1_555 ? ? ? ? ? ? ? 2.049 ? ? disulf19 disulf ? ? E CYS 42 SG ? ? ? 1_555 E CYS 53 SG ? ? E CYS 42 E CYS 53 1_555 ? ? ? ? ? ? ? 2.010 ? ? disulf20 disulf ? ? E CYS 54 SG ? ? ? 1_555 E CYS 59 SG ? ? E CYS 54 E CYS 59 1_555 ? ? ? ? ? ? ? 2.016 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 CYS A 3 ? CYS A 21 ? CYS A 3 ? 1_555 CYS A 21 ? 1_555 SG SG . . . None 'Disulfide bridge' 2 CYS A 14 ? CYS A 38 ? CYS A 14 ? 1_555 CYS A 38 ? 1_555 SG SG . . . None 'Disulfide bridge' 3 CYS A 42 ? CYS A 53 ? CYS A 42 ? 1_555 CYS A 53 ? 1_555 SG SG . . . None 'Disulfide bridge' 4 CYS A 54 ? CYS A 59 ? CYS A 54 ? 1_555 CYS A 59 ? 1_555 SG SG . . . None 'Disulfide bridge' 5 CYS B 3 ? CYS B 21 ? CYS B 3 ? 1_555 CYS B 21 ? 1_555 SG SG . . . None 'Disulfide bridge' 6 CYS B 14 ? CYS B 38 ? CYS B 14 ? 1_555 CYS B 38 ? 1_555 SG SG . . . None 'Disulfide bridge' 7 CYS B 42 ? CYS B 53 ? CYS B 42 ? 1_555 CYS B 53 ? 1_555 SG SG . . . None 'Disulfide bridge' 8 CYS B 54 ? CYS B 59 ? CYS B 54 ? 1_555 CYS B 59 ? 1_555 SG SG . . . None 'Disulfide bridge' 9 CYS C 3 ? CYS C 21 ? CYS C 3 ? 1_555 CYS C 21 ? 1_555 SG SG . . . None 'Disulfide bridge' 10 CYS C 14 ? CYS C 38 ? CYS C 14 ? 1_555 CYS C 38 ? 1_555 SG SG . . . None 'Disulfide bridge' 11 CYS C 42 ? CYS C 53 ? CYS C 42 ? 1_555 CYS C 53 ? 1_555 SG SG . . . None 'Disulfide bridge' 12 CYS C 54 ? CYS C 59 ? CYS C 54 ? 1_555 CYS C 59 ? 1_555 SG SG . . . None 'Disulfide bridge' 13 CYS D 3 ? CYS D 21 ? CYS D 3 ? 1_555 CYS D 21 ? 1_555 SG SG . . . None 'Disulfide bridge' 14 CYS D 14 ? CYS D 38 ? CYS D 14 ? 1_555 CYS D 38 ? 1_555 SG SG . . . None 'Disulfide bridge' 15 CYS D 42 ? CYS D 53 ? CYS D 42 ? 1_555 CYS D 53 ? 1_555 SG SG . . . None 'Disulfide bridge' 16 CYS D 54 ? CYS D 59 ? CYS D 54 ? 1_555 CYS D 59 ? 1_555 SG SG . . . None 'Disulfide bridge' 17 CYS E 3 ? CYS E 21 ? CYS E 3 ? 1_555 CYS E 21 ? 1_555 SG SG . . . None 'Disulfide bridge' 18 CYS E 14 ? CYS E 38 ? CYS E 14 ? 1_555 CYS E 38 ? 1_555 SG SG . . . None 'Disulfide bridge' 19 CYS E 42 ? CYS E 53 ? CYS E 42 ? 1_555 CYS E 53 ? 1_555 SG SG . . . None 'Disulfide bridge' 20 CYS E 54 ? CYS E 59 ? CYS E 54 ? 1_555 CYS E 59 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 3 ? C ? 2 ? D ? 3 ? E ? 2 ? F ? 3 ? G ? 2 ? H ? 3 ? I ? 2 ? J ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel E 1 2 ? anti-parallel F 1 2 ? anti-parallel F 2 3 ? anti-parallel G 1 2 ? anti-parallel H 1 2 ? anti-parallel H 2 3 ? anti-parallel I 1 2 ? anti-parallel J 1 2 ? anti-parallel J 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 2 ? ASN A 4 ? LYS A 2 ASN A 4 A 2 TYR A 11 ? THR A 13 ? TYR A 11 THR A 13 B 1 LYS A 35 ? ILE A 39 ? LYS A 35 ILE A 39 B 2 LEU A 20 ? MET A 26 ? LEU A 20 MET A 26 B 3 VAL A 49 ? CYS A 54 ? VAL A 49 CYS A 54 C 1 LYS B 2 ? ASN B 4 ? LYS B 2 ASN B 4 C 2 TYR B 11 ? THR B 13 ? TYR B 11 THR B 13 D 1 LYS B 35 ? ILE B 39 ? LYS B 35 ILE B 39 D 2 LEU B 20 ? MET B 26 ? LEU B 20 MET B 26 D 3 VAL B 49 ? CYS B 54 ? VAL B 49 CYS B 54 E 1 LYS C 2 ? ASN C 4 ? LYS C 2 ASN C 4 E 2 TYR C 11 ? THR C 13 ? TYR C 11 THR C 13 F 1 LYS C 35 ? ILE C 39 ? LYS C 35 ILE C 39 F 2 LEU C 20 ? MET C 26 ? LEU C 20 MET C 26 F 3 VAL C 49 ? CYS C 54 ? VAL C 49 CYS C 54 G 1 LYS D 2 ? ASN D 4 ? LYS D 2 ASN D 4 G 2 TYR D 11 ? THR D 13 ? TYR D 11 THR D 13 H 1 LYS D 35 ? ILE D 39 ? LYS D 35 ILE D 39 H 2 LEU D 20 ? MET D 26 ? LEU D 20 MET D 26 H 3 VAL D 49 ? CYS D 54 ? VAL D 49 CYS D 54 I 1 LYS E 2 ? ASN E 4 ? LYS E 2 ASN E 4 I 2 TYR E 11 ? THR E 13 ? TYR E 11 THR E 13 J 1 LYS E 35 ? ILE E 39 ? LYS E 35 ILE E 39 J 2 LEU E 20 ? MET E 26 ? LEU E 20 MET E 26 J 3 VAL E 49 ? CYS E 54 ? VAL E 49 CYS E 54 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N CYS A 3 ? N CYS A 3 O LYS A 12 ? O LYS A 12 B 1 2 O LYS A 35 ? O LYS A 35 N MET A 24 ? N MET A 24 B 2 3 N CYS A 21 ? N CYS A 21 O CYS A 54 ? O CYS A 54 C 1 2 N CYS B 3 ? N CYS B 3 O LYS B 12 ? O LYS B 12 D 1 2 O LYS B 35 ? O LYS B 35 N MET B 24 ? N MET B 24 D 2 3 N CYS B 21 ? N CYS B 21 O CYS B 54 ? O CYS B 54 E 1 2 N CYS C 3 ? N CYS C 3 O LYS C 12 ? O LYS C 12 F 1 2 O ILE C 39 ? O ILE C 39 N LEU C 20 ? N LEU C 20 F 2 3 N CYS C 21 ? N CYS C 21 O CYS C 54 ? O CYS C 54 G 1 2 N CYS D 3 ? N CYS D 3 O LYS D 12 ? O LYS D 12 H 1 2 O ILE D 39 ? O ILE D 39 N LEU D 20 ? N LEU D 20 H 2 3 N CYS D 21 ? N CYS D 21 O CYS D 54 ? O CYS D 54 I 1 2 N CYS E 3 ? N CYS E 3 O LYS E 12 ? O LYS E 12 J 1 2 O GLY E 37 ? O GLY E 37 N TYR E 22 ? N TYR E 22 J 2 3 N CYS E 21 ? N CYS E 21 O CYS E 54 ? O CYS E 54 # _pdbx_entry_details.entry_id 4OM4 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O B HOH 111 ? ? 1_555 O E HOH 107 ? ? 7_555 1.80 2 1 CD2 A LEU 9 ? ? 1_555 CD2 B LEU 9 ? ? 3_454 2.10 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 58 ? ? 36.05 38.08 2 1 LEU B 9 ? ? 107.40 -17.12 3 1 PRO D 15 ? ? -62.19 -176.57 4 1 LEU E 6 ? ? 76.31 -56.55 5 1 PRO E 15 ? ? -59.86 -178.88 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id D _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 104 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id I _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLY N N N N 88 GLY CA C N N 89 GLY C C N N 90 GLY O O N N 91 GLY OXT O N N 92 GLY H H N N 93 GLY H2 H N N 94 GLY HA2 H N N 95 GLY HA3 H N N 96 GLY HXT H N N 97 HOH O O N N 98 HOH H1 H N N 99 HOH H2 H N N 100 ILE N N N N 101 ILE CA C N S 102 ILE C C N N 103 ILE O O N N 104 ILE CB C N S 105 ILE CG1 C N N 106 ILE CG2 C N N 107 ILE CD1 C N N 108 ILE OXT O N N 109 ILE H H N N 110 ILE H2 H N N 111 ILE HA H N N 112 ILE HB H N N 113 ILE HG12 H N N 114 ILE HG13 H N N 115 ILE HG21 H N N 116 ILE HG22 H N N 117 ILE HG23 H N N 118 ILE HD11 H N N 119 ILE HD12 H N N 120 ILE HD13 H N N 121 ILE HXT H N N 122 LEU N N N N 123 LEU CA C N S 124 LEU C C N N 125 LEU O O N N 126 LEU CB C N N 127 LEU CG C N N 128 LEU CD1 C N N 129 LEU CD2 C N N 130 LEU OXT O N N 131 LEU H H N N 132 LEU H2 H N N 133 LEU HA H N N 134 LEU HB2 H N N 135 LEU HB3 H N N 136 LEU HG H N N 137 LEU HD11 H N N 138 LEU HD12 H N N 139 LEU HD13 H N N 140 LEU HD21 H N N 141 LEU HD22 H N N 142 LEU HD23 H N N 143 LEU HXT H N N 144 LYS N N N N 145 LYS CA C N S 146 LYS C C N N 147 LYS O O N N 148 LYS CB C N N 149 LYS CG C N N 150 LYS CD C N N 151 LYS CE C N N 152 LYS NZ N N N 153 LYS OXT O N N 154 LYS H H N N 155 LYS H2 H N N 156 LYS HA H N N 157 LYS HB2 H N N 158 LYS HB3 H N N 159 LYS HG2 H N N 160 LYS HG3 H N N 161 LYS HD2 H N N 162 LYS HD3 H N N 163 LYS HE2 H N N 164 LYS HE3 H N N 165 LYS HZ1 H N N 166 LYS HZ2 H N N 167 LYS HZ3 H N N 168 LYS HXT H N N 169 MET N N N N 170 MET CA C N S 171 MET C C N N 172 MET O O N N 173 MET CB C N N 174 MET CG C N N 175 MET SD S N N 176 MET CE C N N 177 MET OXT O N N 178 MET H H N N 179 MET H2 H N N 180 MET HA H N N 181 MET HB2 H N N 182 MET HB3 H N N 183 MET HG2 H N N 184 MET HG3 H N N 185 MET HE1 H N N 186 MET HE2 H N N 187 MET HE3 H N N 188 MET HXT H N N 189 PHE N N N N 190 PHE CA C N S 191 PHE C C N N 192 PHE O O N N 193 PHE CB C N N 194 PHE CG C Y N 195 PHE CD1 C Y N 196 PHE CD2 C Y N 197 PHE CE1 C Y N 198 PHE CE2 C Y N 199 PHE CZ C Y N 200 PHE OXT O N N 201 PHE H H N N 202 PHE H2 H N N 203 PHE HA H N N 204 PHE HB2 H N N 205 PHE HB3 H N N 206 PHE HD1 H N N 207 PHE HD2 H N N 208 PHE HE1 H N N 209 PHE HE2 H N N 210 PHE HZ H N N 211 PHE HXT H N N 212 PRO N N N N 213 PRO CA C N S 214 PRO C C N N 215 PRO O O N N 216 PRO CB C N N 217 PRO CG C N N 218 PRO CD C N N 219 PRO OXT O N N 220 PRO H H N N 221 PRO HA H N N 222 PRO HB2 H N N 223 PRO HB3 H N N 224 PRO HG2 H N N 225 PRO HG3 H N N 226 PRO HD2 H N N 227 PRO HD3 H N N 228 PRO HXT H N N 229 SER N N N N 230 SER CA C N S 231 SER C C N N 232 SER O O N N 233 SER CB C N N 234 SER OG O N N 235 SER OXT O N N 236 SER H H N N 237 SER H2 H N N 238 SER HA H N N 239 SER HB2 H N N 240 SER HB3 H N N 241 SER HG H N N 242 SER HXT H N N 243 THR N N N N 244 THR CA C N S 245 THR C C N N 246 THR O O N N 247 THR CB C N R 248 THR OG1 O N N 249 THR CG2 C N N 250 THR OXT O N N 251 THR H H N N 252 THR H2 H N N 253 THR HA H N N 254 THR HB H N N 255 THR HG1 H N N 256 THR HG21 H N N 257 THR HG22 H N N 258 THR HG23 H N N 259 THR HXT H N N 260 TYR N N N N 261 TYR CA C N S 262 TYR C C N N 263 TYR O O N N 264 TYR CB C N N 265 TYR CG C Y N 266 TYR CD1 C Y N 267 TYR CD2 C Y N 268 TYR CE1 C Y N 269 TYR CE2 C Y N 270 TYR CZ C Y N 271 TYR OH O N N 272 TYR OXT O N N 273 TYR H H N N 274 TYR H2 H N N 275 TYR HA H N N 276 TYR HB2 H N N 277 TYR HB3 H N N 278 TYR HD1 H N N 279 TYR HD2 H N N 280 TYR HE1 H N N 281 TYR HE2 H N N 282 TYR HH H N N 283 TYR HXT H N N 284 VAL N N N N 285 VAL CA C N S 286 VAL C C N N 287 VAL O O N N 288 VAL CB C N N 289 VAL CG1 C N N 290 VAL CG2 C N N 291 VAL OXT O N N 292 VAL H H N N 293 VAL H2 H N N 294 VAL HA H N N 295 VAL HB H N N 296 VAL HG11 H N N 297 VAL HG12 H N N 298 VAL HG13 H N N 299 VAL HG21 H N N 300 VAL HG22 H N N 301 VAL HG23 H N N 302 VAL HXT H N N 303 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLY N CA sing N N 83 GLY N H sing N N 84 GLY N H2 sing N N 85 GLY CA C sing N N 86 GLY CA HA2 sing N N 87 GLY CA HA3 sing N N 88 GLY C O doub N N 89 GLY C OXT sing N N 90 GLY OXT HXT sing N N 91 HOH O H1 sing N N 92 HOH O H2 sing N N 93 ILE N CA sing N N 94 ILE N H sing N N 95 ILE N H2 sing N N 96 ILE CA C sing N N 97 ILE CA CB sing N N 98 ILE CA HA sing N N 99 ILE C O doub N N 100 ILE C OXT sing N N 101 ILE CB CG1 sing N N 102 ILE CB CG2 sing N N 103 ILE CB HB sing N N 104 ILE CG1 CD1 sing N N 105 ILE CG1 HG12 sing N N 106 ILE CG1 HG13 sing N N 107 ILE CG2 HG21 sing N N 108 ILE CG2 HG22 sing N N 109 ILE CG2 HG23 sing N N 110 ILE CD1 HD11 sing N N 111 ILE CD1 HD12 sing N N 112 ILE CD1 HD13 sing N N 113 ILE OXT HXT sing N N 114 LEU N CA sing N N 115 LEU N H sing N N 116 LEU N H2 sing N N 117 LEU CA C sing N N 118 LEU CA CB sing N N 119 LEU CA HA sing N N 120 LEU C O doub N N 121 LEU C OXT sing N N 122 LEU CB CG sing N N 123 LEU CB HB2 sing N N 124 LEU CB HB3 sing N N 125 LEU CG CD1 sing N N 126 LEU CG CD2 sing N N 127 LEU CG HG sing N N 128 LEU CD1 HD11 sing N N 129 LEU CD1 HD12 sing N N 130 LEU CD1 HD13 sing N N 131 LEU CD2 HD21 sing N N 132 LEU CD2 HD22 sing N N 133 LEU CD2 HD23 sing N N 134 LEU OXT HXT sing N N 135 LYS N CA sing N N 136 LYS N H sing N N 137 LYS N H2 sing N N 138 LYS CA C sing N N 139 LYS CA CB sing N N 140 LYS CA HA sing N N 141 LYS C O doub N N 142 LYS C OXT sing N N 143 LYS CB CG sing N N 144 LYS CB HB2 sing N N 145 LYS CB HB3 sing N N 146 LYS CG CD sing N N 147 LYS CG HG2 sing N N 148 LYS CG HG3 sing N N 149 LYS CD CE sing N N 150 LYS CD HD2 sing N N 151 LYS CD HD3 sing N N 152 LYS CE NZ sing N N 153 LYS CE HE2 sing N N 154 LYS CE HE3 sing N N 155 LYS NZ HZ1 sing N N 156 LYS NZ HZ2 sing N N 157 LYS NZ HZ3 sing N N 158 LYS OXT HXT sing N N 159 MET N CA sing N N 160 MET N H sing N N 161 MET N H2 sing N N 162 MET CA C sing N N 163 MET CA CB sing N N 164 MET CA HA sing N N 165 MET C O doub N N 166 MET C OXT sing N N 167 MET CB CG sing N N 168 MET CB HB2 sing N N 169 MET CB HB3 sing N N 170 MET CG SD sing N N 171 MET CG HG2 sing N N 172 MET CG HG3 sing N N 173 MET SD CE sing N N 174 MET CE HE1 sing N N 175 MET CE HE2 sing N N 176 MET CE HE3 sing N N 177 MET OXT HXT sing N N 178 PHE N CA sing N N 179 PHE N H sing N N 180 PHE N H2 sing N N 181 PHE CA C sing N N 182 PHE CA CB sing N N 183 PHE CA HA sing N N 184 PHE C O doub N N 185 PHE C OXT sing N N 186 PHE CB CG sing N N 187 PHE CB HB2 sing N N 188 PHE CB HB3 sing N N 189 PHE CG CD1 doub Y N 190 PHE CG CD2 sing Y N 191 PHE CD1 CE1 sing Y N 192 PHE CD1 HD1 sing N N 193 PHE CD2 CE2 doub Y N 194 PHE CD2 HD2 sing N N 195 PHE CE1 CZ doub Y N 196 PHE CE1 HE1 sing N N 197 PHE CE2 CZ sing Y N 198 PHE CE2 HE2 sing N N 199 PHE CZ HZ sing N N 200 PHE OXT HXT sing N N 201 PRO N CA sing N N 202 PRO N CD sing N N 203 PRO N H sing N N 204 PRO CA C sing N N 205 PRO CA CB sing N N 206 PRO CA HA sing N N 207 PRO C O doub N N 208 PRO C OXT sing N N 209 PRO CB CG sing N N 210 PRO CB HB2 sing N N 211 PRO CB HB3 sing N N 212 PRO CG CD sing N N 213 PRO CG HG2 sing N N 214 PRO CG HG3 sing N N 215 PRO CD HD2 sing N N 216 PRO CD HD3 sing N N 217 PRO OXT HXT sing N N 218 SER N CA sing N N 219 SER N H sing N N 220 SER N H2 sing N N 221 SER CA C sing N N 222 SER CA CB sing N N 223 SER CA HA sing N N 224 SER C O doub N N 225 SER C OXT sing N N 226 SER CB OG sing N N 227 SER CB HB2 sing N N 228 SER CB HB3 sing N N 229 SER OG HG sing N N 230 SER OXT HXT sing N N 231 THR N CA sing N N 232 THR N H sing N N 233 THR N H2 sing N N 234 THR CA C sing N N 235 THR CA CB sing N N 236 THR CA HA sing N N 237 THR C O doub N N 238 THR C OXT sing N N 239 THR CB OG1 sing N N 240 THR CB CG2 sing N N 241 THR CB HB sing N N 242 THR OG1 HG1 sing N N 243 THR CG2 HG21 sing N N 244 THR CG2 HG22 sing N N 245 THR CG2 HG23 sing N N 246 THR OXT HXT sing N N 247 TYR N CA sing N N 248 TYR N H sing N N 249 TYR N H2 sing N N 250 TYR CA C sing N N 251 TYR CA CB sing N N 252 TYR CA HA sing N N 253 TYR C O doub N N 254 TYR C OXT sing N N 255 TYR CB CG sing N N 256 TYR CB HB2 sing N N 257 TYR CB HB3 sing N N 258 TYR CG CD1 doub Y N 259 TYR CG CD2 sing Y N 260 TYR CD1 CE1 sing Y N 261 TYR CD1 HD1 sing N N 262 TYR CD2 CE2 doub Y N 263 TYR CD2 HD2 sing N N 264 TYR CE1 CZ doub Y N 265 TYR CE1 HE1 sing N N 266 TYR CE2 CZ sing Y N 267 TYR CE2 HE2 sing N N 268 TYR CZ OH sing N N 269 TYR OH HH sing N N 270 TYR OXT HXT sing N N 271 VAL N CA sing N N 272 VAL N H sing N N 273 VAL N H2 sing N N 274 VAL CA C sing N N 275 VAL CA CB sing N N 276 VAL CA HA sing N N 277 VAL C O doub N N 278 VAL C OXT sing N N 279 VAL CB CG1 sing N N 280 VAL CB CG2 sing N N 281 VAL CB HB sing N N 282 VAL CG1 HG11 sing N N 283 VAL CG1 HG12 sing N N 284 VAL CG1 HG13 sing N N 285 VAL CG2 HG21 sing N N 286 VAL CG2 HG22 sing N N 287 VAL CG2 HG23 sing N N 288 VAL OXT HXT sing N N 289 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2BHI _pdbx_initial_refinement_model.details 'PDB ENTRY 2BHI' # _atom_sites.entry_id 4OM4 _atom_sites.fract_transf_matrix[1][1] 0.009310 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009310 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009974 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_