HEADER TRANSFERASE 27-JAN-14 4OMT TITLE CRYSTAL STRUCTURE OF HUMAN MUSCLE PHOSPHOFRUCTOKINASE (DISSOCIATED TITLE 2 HOMODIMER) COMPND MOL_ID: 1; COMPND 2 MOLECULE: 6-PHOSPHOFRUCTOKINASE, MUSCLE TYPE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 8-755; COMPND 5 SYNONYM: PHOSPHOFRUCTO-1-KINASE ISOZYME A, PFK-A, COMPND 6 PHOSPHOFRUCTOKINASE-M, PHOSPHOFRUCTOKINASE 1, PHOSPHOHEXOKINASE; COMPND 7 EC: 2.7.1.11; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PFKM, PFKX; SOURCE 6 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 7 EXPRESSION_SYSTEM_COMMON: YEAST; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 4932; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: HD114-8D; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PJJH71 KEYWDS HUMAN 6-PHOSPHOFRUCTOKINASE, 6-PHOSPHOFRUCTOKINASE ACTIVITY, FRUCTOSE KEYWDS 2 6-PHOSPHATE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.KLOOS,N.STRAETER REVDAT 5 20-SEP-23 4OMT 1 REMARK REVDAT 4 17-JUL-19 4OMT 1 REMARK REVDAT 3 10-DEC-14 4OMT 1 TITLE REVDAT 2 24-SEP-14 4OMT 1 JRNL REVDAT 1 14-MAY-14 4OMT 0 JRNL AUTH M.KLOOS,A.BRUSER,J.KIRCHBERGER,T.SCHONEBERG,N.STRATER JRNL TITL CRYSTALLIZATION AND PRELIMINARY CRYSTALLOGRAPHIC ANALYSIS OF JRNL TITL 2 HUMAN MUSCLE PHOSPHOFRUCTOKINASE, THE MAIN REGULATOR OF JRNL TITL 3 GLYCOLYSIS. JRNL REF ACTA CRYSTALLOGR F STRUCT V. 70 578 2014 JRNL REF 2 BIOL COMMUN JRNL REFN ESSN 1744-3091 JRNL PMID 24817713 JRNL DOI 10.1107/S2053230X14008723 REMARK 2 REMARK 2 RESOLUTION. 6.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 6.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.550 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 9802 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.242 REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.600 REMARK 3 FREE R VALUE TEST SET COUNT : 941 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.9562 - 11.4305 0.99 1279 119 0.3275 0.3529 REMARK 3 2 11.4305 - 9.0943 1.00 1271 130 0.1884 0.2174 REMARK 3 3 9.0943 - 7.9510 1.00 1259 144 0.1813 0.2379 REMARK 3 4 7.9510 - 7.2269 1.00 1237 158 0.2272 0.2735 REMARK 3 5 7.2269 - 6.7105 1.00 1268 144 0.2107 0.2815 REMARK 3 6 6.7105 - 6.3158 1.00 1262 122 0.2439 0.2739 REMARK 3 7 6.3158 - 6.0002 1.00 1285 124 0.2706 0.3355 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.810 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.000 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 222.6 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.92000 REMARK 3 B22 (A**2) : 4.92000 REMARK 3 B33 (A**2) : -15.95000 REMARK 3 B12 (A**2) : 4.92000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 5813 REMARK 3 ANGLE : 1.446 7846 REMARK 3 CHIRALITY : 0.093 885 REMARK 3 PLANARITY : 0.006 1015 REMARK 3 DIHEDRAL : 17.376 2143 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4OMT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000084690. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5537 REMARK 200 RESOLUTION RANGE HIGH (A) : 6.000 REMARK 200 RESOLUTION RANGE LOW (A) : 46.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 11.60 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : 0.11600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 6.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 6.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.46200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3O8N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 80.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.6 M LINO3, 0.05 M NAF, 0.1 M SODIUM REMARK 280 ACETATE, PH 5.4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.66667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 44.33333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 88.66667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 44.33333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 88.66667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 44.33333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 88.66667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 44.33333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 HIS A 3 REMARK 465 GLU A 4 REMARK 465 GLU A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 GLU A 756 REMARK 465 ILE A 757 REMARK 465 ASP A 758 REMARK 465 LEU A 759 REMARK 465 ASP A 760 REMARK 465 THR A 761 REMARK 465 SER A 762 REMARK 465 ASP A 763 REMARK 465 HIS A 764 REMARK 465 ALA A 765 REMARK 465 HIS A 766 REMARK 465 LEU A 767 REMARK 465 GLU A 768 REMARK 465 HIS A 769 REMARK 465 ILE A 770 REMARK 465 THR A 771 REMARK 465 ARG A 772 REMARK 465 LYS A 773 REMARK 465 ARG A 774 REMARK 465 SER A 775 REMARK 465 GLY A 776 REMARK 465 GLU A 777 REMARK 465 ALA A 778 REMARK 465 ALA A 779 REMARK 465 VAL A 780 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CZ TYR A 103 CD2 LEU A 139 0.24 REMARK 500 N ASP A 237 CE LYS A 269 0.61 REMARK 500 CA ASP A 237 NZ LYS A 269 1.11 REMARK 500 CE2 TYR A 103 CD2 LEU A 139 1.31 REMARK 500 OH TYR A 103 CD2 LEU A 139 1.35 REMARK 500 O ALA A 9 N THR A 11 1.47 REMARK 500 CE1 TYR A 103 CD2 LEU A 139 1.52 REMARK 500 N ASP A 237 NZ LYS A 269 1.52 REMARK 500 C ASP A 236 CE LYS A 269 1.58 REMARK 500 CB ASP A 237 NZ LYS A 269 1.67 REMARK 500 CZ TYR A 103 CG LEU A 139 1.72 REMARK 500 CG2 THR A 275 OD2 ASP A 278 1.75 REMARK 500 CA ASP A 237 CE LYS A 269 1.83 REMARK 500 CG ASP A 237 NZ LYS A 269 1.95 REMARK 500 OH TYR A 103 CG LEU A 139 2.02 REMARK 500 N ASP A 237 CD LYS A 269 2.03 REMARK 500 CE MET A 186 NH1 ARG A 673 2.03 REMARK 500 CG2 THR A 275 CG ASP A 278 2.07 REMARK 500 O LEU A 99 CD2 TYR A 103 2.08 REMARK 500 OD1 ASP A 237 NZ LYS A 269 2.14 REMARK 500 O VAL A 609 N HIS A 611 2.14 REMARK 500 O THR A 69 OG SER A 72 2.16 REMARK 500 O THR A 250 OG SER A 255 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CB SER A 396 CB SER A 396 4665 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 394 C VAL A 395 N 0.253 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 79 CA - CB - CG ANGL. DEV. = 13.8 DEGREES REMARK 500 PRO A 394 CA - C - N ANGL. DEV. = -18.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 9 -96.67 -131.69 REMARK 500 LYS A 10 -24.13 22.01 REMARK 500 VAL A 34 -76.85 -36.98 REMARK 500 THR A 44 32.47 -75.67 REMARK 500 GLU A 53 77.04 59.58 REMARK 500 ASP A 60 -75.44 -53.40 REMARK 500 ALA A 87 -145.73 -114.54 REMARK 500 ARG A 88 32.57 -151.30 REMARK 500 GLU A 131 39.60 -91.17 REMARK 500 LEU A 139 22.98 -75.48 REMARK 500 ALA A 142 0.42 -166.80 REMARK 500 LYS A 152 36.87 -146.96 REMARK 500 SER A 153 -112.75 -62.09 REMARK 500 SER A 154 24.78 -70.21 REMARK 500 TYR A 155 71.25 -109.73 REMARK 500 ILE A 165 5.32 -63.90 REMARK 500 ASN A 167 17.33 57.01 REMARK 500 THR A 195 -34.63 -138.40 REMARK 500 ALA A 196 89.35 -61.44 REMARK 500 SER A 198 -113.11 -75.72 REMARK 500 MET A 208 -163.67 -60.81 REMARK 500 TYR A 214 -76.20 -52.97 REMARK 500 PRO A 235 62.68 -67.25 REMARK 500 ASP A 236 126.48 -38.88 REMARK 500 ASP A 237 -173.75 78.56 REMARK 500 ASP A 238 104.49 -53.18 REMARK 500 ARG A 253 -12.06 -49.02 REMARK 500 ARG A 256 -73.44 -81.97 REMARK 500 LYS A 269 -63.94 -22.60 REMARK 500 HIS A 298 -1.29 63.84 REMARK 500 SER A 337 140.06 -173.25 REMARK 500 SER A 339 109.72 -172.49 REMARK 500 ASN A 341 12.09 91.82 REMARK 500 LYS A 365 15.50 -67.65 REMARK 500 ARG A 376 -123.77 46.22 REMARK 500 TRP A 382 -70.20 -48.33 REMARK 500 HIS A 390 169.91 -44.74 REMARK 500 ARG A 392 -109.15 -46.67 REMARK 500 PRO A 394 179.67 -58.06 REMARK 500 ALA A 418 -72.54 -55.70 REMARK 500 VAL A 419 -54.33 -28.67 REMARK 500 ARG A 424 -70.89 -45.92 REMARK 500 ASP A 438 65.94 70.99 REMARK 500 GLU A 441 1.90 -58.74 REMARK 500 ALA A 444 -85.04 -51.51 REMARK 500 GLN A 447 72.72 -67.44 REMARK 500 THR A 472 146.74 -38.60 REMARK 500 LYS A 476 -4.92 -52.01 REMARK 500 SER A 477 27.78 -143.53 REMARK 500 ASN A 489 38.34 71.43 REMARK 500 REMARK 500 THIS ENTRY HAS 70 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PRO A 394 -15.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3O8N RELATED DB: PDB REMARK 900 MR MODEL REMARK 900 RELATED ID: 3OPY RELATED DB: PDB DBREF 4OMT A 1 780 UNP P08237 K6PF_HUMAN 1 780 SEQRES 1 A 780 MET THR HIS GLU GLU HIS HIS ALA ALA LYS THR LEU GLY SEQRES 2 A 780 ILE GLY LYS ALA ILE ALA VAL LEU THR SER GLY GLY ASP SEQRES 3 A 780 ALA GLN GLY MET ASN ALA ALA VAL ARG ALA VAL VAL ARG SEQRES 4 A 780 VAL GLY ILE PHE THR GLY ALA ARG VAL PHE PHE VAL HIS SEQRES 5 A 780 GLU GLY TYR GLN GLY LEU VAL ASP GLY GLY ASP HIS ILE SEQRES 6 A 780 LYS GLU ALA THR TRP GLU SER VAL SER MET MET LEU GLN SEQRES 7 A 780 LEU GLY GLY THR VAL ILE GLY SER ALA ARG CYS LYS ASP SEQRES 8 A 780 PHE ARG GLU ARG GLU GLY ARG LEU ARG ALA ALA TYR ASN SEQRES 9 A 780 LEU VAL LYS ARG GLY ILE THR ASN LEU CYS VAL ILE GLY SEQRES 10 A 780 GLY ASP GLY SER LEU THR GLY ALA ASP THR PHE ARG SER SEQRES 11 A 780 GLU TRP SER ASP LEU LEU SER ASP LEU GLN LYS ALA GLY SEQRES 12 A 780 LYS ILE THR ASP GLU GLU ALA THR LYS SER SER TYR LEU SEQRES 13 A 780 ASN ILE VAL GLY LEU VAL GLY SER ILE ASP ASN ASP PHE SEQRES 14 A 780 CYS GLY THR ASP MET THR ILE GLY THR ASP SER ALA LEU SEQRES 15 A 780 HIS ARG ILE MET GLU ILE VAL ASP ALA ILE THR THR THR SEQRES 16 A 780 ALA GLN SER HIS GLN ARG THR PHE VAL LEU GLU VAL MET SEQRES 17 A 780 GLY ARG HIS CYS GLY TYR LEU ALA LEU VAL THR SER LEU SEQRES 18 A 780 SER CYS GLY ALA ASP TRP VAL PHE ILE PRO GLU CYS PRO SEQRES 19 A 780 PRO ASP ASP ASP TRP GLU GLU HIS LEU CYS ARG ARG LEU SEQRES 20 A 780 SER GLU THR ARG THR ARG GLY SER ARG LEU ASN ILE ILE SEQRES 21 A 780 ILE VAL ALA GLU GLY ALA ILE ASP LYS ASN GLY LYS PRO SEQRES 22 A 780 ILE THR SER GLU ASP ILE LYS ASN LEU VAL VAL LYS ARG SEQRES 23 A 780 LEU GLY TYR ASP THR ARG VAL THR VAL LEU GLY HIS VAL SEQRES 24 A 780 GLN ARG GLY GLY THR PRO SER ALA PHE ASP ARG ILE LEU SEQRES 25 A 780 GLY SER ARG MET GLY VAL GLU ALA VAL MET ALA LEU LEU SEQRES 26 A 780 GLU GLY THR PRO ASP THR PRO ALA CYS VAL VAL SER LEU SEQRES 27 A 780 SER GLY ASN GLN ALA VAL ARG LEU PRO LEU MET GLU CYS SEQRES 28 A 780 VAL GLN VAL THR LYS ASP VAL THR LYS ALA MET ASP GLU SEQRES 29 A 780 LYS LYS PHE ASP GLU ALA LEU LYS LEU ARG GLY ARG SER SEQRES 30 A 780 PHE MET ASN ASN TRP GLU VAL TYR LYS LEU LEU ALA HIS SEQRES 31 A 780 VAL ARG PRO PRO VAL SER LYS SER GLY SER HIS THR VAL SEQRES 32 A 780 ALA VAL MET ASN VAL GLY ALA PRO ALA ALA GLY MET ASN SEQRES 33 A 780 ALA ALA VAL ARG SER THR VAL ARG ILE GLY LEU ILE GLN SEQRES 34 A 780 GLY ASN ARG VAL LEU VAL VAL HIS ASP GLY PHE GLU GLY SEQRES 35 A 780 LEU ALA LYS GLY GLN ILE GLU GLU ALA GLY TRP SER TYR SEQRES 36 A 780 VAL GLY GLY TRP THR GLY GLN GLY GLY SER LYS LEU GLY SEQRES 37 A 780 THR LYS ARG THR LEU PRO LYS LYS SER PHE GLU GLN ILE SEQRES 38 A 780 SER ALA ASN ILE THR LYS PHE ASN ILE GLN GLY LEU VAL SEQRES 39 A 780 ILE ILE GLY GLY PHE GLU ALA TYR THR GLY GLY LEU GLU SEQRES 40 A 780 LEU MET GLU GLY ARG LYS GLN PHE ASP GLU LEU CYS ILE SEQRES 41 A 780 PRO PHE VAL VAL ILE PRO ALA THR VAL SER ASN ASN VAL SEQRES 42 A 780 PRO GLY SER ASP PHE SER VAL GLY ALA ASP THR ALA LEU SEQRES 43 A 780 ASN THR ILE CYS THR THR CYS ASP ARG ILE LYS GLN SER SEQRES 44 A 780 ALA ALA GLY THR LYS ARG ARG VAL PHE ILE ILE GLU THR SEQRES 45 A 780 MET GLY GLY TYR CYS GLY TYR LEU ALA THR MET ALA GLY SEQRES 46 A 780 LEU ALA ALA GLY ALA ASP ALA ALA TYR ILE PHE GLU GLU SEQRES 47 A 780 PRO PHE THR ILE ARG ASP LEU GLN ALA ASN VAL GLU HIS SEQRES 48 A 780 LEU VAL GLN LYS MET LYS THR THR VAL LYS ARG GLY LEU SEQRES 49 A 780 VAL LEU ARG ASN GLU LYS CYS ASN GLU ASN TYR THR THR SEQRES 50 A 780 ASP PHE ILE PHE ASN LEU TYR SER GLU GLU GLY LYS GLY SEQRES 51 A 780 ILE PHE ASP SER ARG LYS ASN VAL LEU GLY HIS MET GLN SEQRES 52 A 780 GLN GLY GLY SER PRO THR PRO PHE ASP ARG ASN PHE ALA SEQRES 53 A 780 THR LYS MET GLY ALA LYS ALA MET ASN TRP MET SER GLY SEQRES 54 A 780 LYS ILE LYS GLU SER TYR ARG ASN GLY ARG ILE PHE ALA SEQRES 55 A 780 ASN THR PRO ASP SER GLY CYS VAL LEU GLY MET ARG LYS SEQRES 56 A 780 ARG ALA LEU VAL PHE GLN PRO VAL ALA GLU LEU LYS ASP SEQRES 57 A 780 GLN THR ASP PHE GLU HIS ARG ILE PRO LYS GLU GLN TRP SEQRES 58 A 780 TRP LEU LYS LEU ARG PRO ILE LEU LYS ILE LEU ALA LYS SEQRES 59 A 780 TYR GLU ILE ASP LEU ASP THR SER ASP HIS ALA HIS LEU SEQRES 60 A 780 GLU HIS ILE THR ARG LYS ARG SER GLY GLU ALA ALA VAL HELIX 1 1 GLY A 29 THR A 44 1 16 HELIX 2 2 TYR A 55 GLY A 61 1 7 HELIX 3 3 GLU A 94 GLY A 109 1 16 HELIX 4 4 GLY A 118 GLU A 131 1 14 HELIX 5 5 SER A 133 LEU A 139 1 7 HELIX 6 6 GLY A 177 THR A 193 1 17 HELIX 7 7 GLY A 213 GLY A 224 1 12 HELIX 8 8 TRP A 239 ARG A 253 1 15 HELIX 9 9 THR A 275 LEU A 287 1 13 HELIX 10 10 SER A 306 GLU A 326 1 21 HELIX 11 11 LEU A 348 LYS A 356 1 9 HELIX 12 12 LYS A 356 GLU A 364 1 9 HELIX 13 13 LYS A 366 GLY A 375 1 10 HELIX 14 14 ARG A 376 HIS A 390 1 15 HELIX 15 15 GLY A 414 GLN A 429 1 16 HELIX 16 16 PHE A 440 GLY A 446 1 7 HELIX 17 17 GLY A 452 GLY A 457 5 6 HELIX 18 18 PRO A 474 LYS A 476 5 3 HELIX 19 19 SER A 477 PHE A 488 1 12 HELIX 20 20 GLY A 498 PHE A 515 1 18 HELIX 21 21 GLY A 541 LYS A 557 1 17 HELIX 22 22 GLY A 578 ALA A 588 1 11 HELIX 23 23 THR A 601 LYS A 617 1 17 HELIX 24 24 THR A 636 GLY A 648 1 13 HELIX 25 25 THR A 669 SER A 694 1 26 HELIX 26 26 THR A 704 ASP A 706 5 3 HELIX 27 27 VAL A 723 LYS A 727 1 5 HELIX 28 28 GLN A 740 LYS A 744 5 5 HELIX 29 29 LEU A 745 ALA A 753 1 9 SHEET 1 A 4 ARG A 47 PHE A 49 0 SHEET 2 A 4 ALA A 17 THR A 22 1 N ILE A 18 O PHE A 49 SHEET 3 A 4 ASN A 112 GLY A 117 1 O CYS A 114 N ALA A 19 SHEET 4 A 4 ASN A 157 VAL A 162 1 O ASN A 157 N LEU A 113 SHEET 1 B 4 TRP A 227 PHE A 229 0 SHEET 2 B 4 ASN A 258 VAL A 262 1 O ILE A 261 N TRP A 227 SHEET 3 B 4 THR A 202 GLU A 206 1 N LEU A 205 O VAL A 262 SHEET 4 B 4 THR A 291 THR A 294 1 O THR A 294 N GLU A 206 SHEET 1 C 2 CYS A 334 SER A 339 0 SHEET 2 C 2 GLN A 342 PRO A 347 -1 O VAL A 344 N SER A 337 SHEET 1 D 7 ILE A 448 GLU A 450 0 SHEET 2 D 7 ARG A 432 VAL A 436 -1 N VAL A 435 O GLU A 449 SHEET 3 D 7 THR A 402 VAL A 408 1 N VAL A 403 O LEU A 434 SHEET 4 D 7 LEU A 493 GLY A 497 1 O ILE A 496 N MET A 406 SHEET 5 D 7 PHE A 522 PRO A 526 1 O VAL A 523 N ILE A 495 SHEET 6 D 7 GLY A 708 ARG A 714 1 O CYS A 709 N VAL A 524 SHEET 7 D 7 ALA A 717 PRO A 722 -1 O VAL A 719 N GLY A 712 SHEET 1 E 4 ALA A 592 TYR A 594 0 SHEET 2 E 4 ARG A 622 ASN A 628 1 O LEU A 626 N ALA A 592 SHEET 3 E 4 ARG A 566 THR A 572 1 N PHE A 568 O GLY A 623 SHEET 4 E 4 ASP A 653 VAL A 658 1 O ASP A 653 N VAL A 567 SHEET 1 F 2 THR A 730 ASP A 731 0 SHEET 2 F 2 ILE A 736 PRO A 737 -1 O ILE A 736 N ASP A 731 CISPEP 1 ALA A 8 ALA A 9 0 0.07 CISPEP 2 ARG A 392 PRO A 393 0 -21.13 CRYST1 229.700 229.700 133.000 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004354 0.002513 0.000000 0.00000 SCALE2 0.000000 0.005027 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007519 0.00000