HEADER TRANSCRIPTION/DNA 28-JAN-14 4OMY TITLE CRYSTAL STRUCTURE OF SEMET NOLR FROM SINORHIZOBIUM FREDII IN COMPLEX TITLE 2 WITH OLIGO AT DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: NOLR; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5 - COMPND 7 D(*TP*AP*TP*TP*AP*GP*AP*GP*AP*AP*CP*CP*CP*TP*GP*AP*AP*GP*TP*TP*AP*A)- COMPND 8 3 ); COMPND 9 CHAIN: E, G; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5 - COMPND 13 D(*TP*AP*AP*TP*CP*TP*CP*TP*TP*GP*GP*GP*AP*CP*TP*TP*CP*AP*AP*TP*TP*A)- COMPND 14 3 ); COMPND 15 CHAIN: F, H; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SINORHIZOBIUM FREDII; SOURCE 3 ORGANISM_TAXID: 380; SOURCE 4 GENE: NOLR; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 MOL_ID: 3; SOURCE 10 SYNTHETIC: YES KEYWDS HELIX-TURN-HELIX, TRANSCRIPTION REGULATOR, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.G.LEE,H.B.KRISHNAN,J.M.JEZ REVDAT 2 04-JUN-14 4OMY 1 JRNL REVDAT 1 16-APR-14 4OMY 0 JRNL AUTH S.G.LEE,H.B.KRISHNAN,J.M.JEZ JRNL TITL STRUCTURAL BASIS FOR REGULATION OF RHIZOBIAL NODULATION AND JRNL TITL 2 SYMBIOSIS GENE EXPRESSION BY THE REGULATORY PROTEIN NOLR. JRNL REF PROC.NATL.ACAD.SCI.USA V. 111 6509 2014 JRNL REFN ISSN 0027-8424 JRNL PMID 24733893 JRNL DOI 10.1073/PNAS.1402243111 REMARK 2 REMARK 2 RESOLUTION. 3.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.120 REMARK 3 COMPLETENESS FOR RANGE (%) : 77.3 REMARK 3 NUMBER OF REFLECTIONS : 18909 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.134 REMARK 3 R VALUE (WORKING SET) : 0.132 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 950 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.8902 - 5.8535 0.99 3307 173 0.1172 0.1558 REMARK 3 2 5.8535 - 4.6479 0.99 3275 184 0.1440 0.1915 REMARK 3 3 4.6479 - 4.0609 0.97 3232 167 0.1263 0.1706 REMARK 3 4 4.0609 - 3.6898 0.80 2652 132 0.1483 0.2186 REMARK 3 5 3.6898 - 3.4255 0.65 2162 97 0.1522 0.2087 REMARK 3 6 3.4255 - 3.2236 0.55 1850 109 0.1407 0.1812 REMARK 3 7 3.2236 - 3.0622 0.45 1481 88 0.1485 0.2310 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.900 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 4892 REMARK 3 ANGLE : 1.452 6949 REMARK 3 CHIRALITY : 0.064 816 REMARK 3 PLANARITY : 0.007 593 REMARK 3 DIHEDRAL : 25.507 1961 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 30 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: chain 'A' and (resid 6 through 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 92.7496 58.7391 25.7692 REMARK 3 T TENSOR REMARK 3 T11: 1.4541 T22: 1.1384 REMARK 3 T33: 1.0680 T12: 0.1764 REMARK 3 T13: -0.1400 T23: -0.1642 REMARK 3 L TENSOR REMARK 3 L11: 2.9802 L22: 8.6721 REMARK 3 L33: 8.1591 L12: -3.5536 REMARK 3 L13: 4.9412 L23: -6.1188 REMARK 3 S TENSOR REMARK 3 S11: -1.5265 S12: -2.2273 S13: 2.8104 REMARK 3 S21: 2.1294 S22: 0.0981 S23: -1.5030 REMARK 3 S31: -1.0009 S32: -1.3561 S33: 1.2176 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: chain 'A' and (resid 27 through 77 ) REMARK 3 ORIGIN FOR THE GROUP (A): 75.4032 69.7387 10.6284 REMARK 3 T TENSOR REMARK 3 T11: 0.9850 T22: 0.6469 REMARK 3 T33: 0.9974 T12: 0.1558 REMARK 3 T13: 0.2850 T23: 0.1801 REMARK 3 L TENSOR REMARK 3 L11: 7.3105 L22: 7.3722 REMARK 3 L33: 4.0452 L12: -6.4720 REMARK 3 L13: 1.1394 L23: 0.1607 REMARK 3 S TENSOR REMARK 3 S11: 0.5580 S12: 0.6623 S13: 1.4368 REMARK 3 S21: -0.1467 S22: 0.1213 S23: -0.2953 REMARK 3 S31: -1.1017 S32: -0.1106 S33: -0.3508 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: chain 'A' and (resid 78 through 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): 74.8972 78.4385 11.4424 REMARK 3 T TENSOR REMARK 3 T11: 1.3139 T22: 0.3049 REMARK 3 T33: 1.5370 T12: 0.0005 REMARK 3 T13: 0.4791 T23: 0.6842 REMARK 3 L TENSOR REMARK 3 L11: 3.1791 L22: 1.7837 REMARK 3 L33: 7.0122 L12: -0.2672 REMARK 3 L13: 0.8550 L23: 0.9220 REMARK 3 S TENSOR REMARK 3 S11: 0.2665 S12: 1.4337 S13: 1.9741 REMARK 3 S21: -0.7830 S22: -1.1507 S23: -0.9618 REMARK 3 S31: -1.1531 S32: -0.5635 S33: -1.4203 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: chain 'A' and (resid 88 through 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): 91.3491 64.0172 7.0259 REMARK 3 T TENSOR REMARK 3 T11: 0.7925 T22: 0.9914 REMARK 3 T33: 1.4922 T12: -0.0623 REMARK 3 T13: 0.3123 T23: 0.1297 REMARK 3 L TENSOR REMARK 3 L11: 5.7504 L22: 7.2165 REMARK 3 L33: 3.6836 L12: -2.4654 REMARK 3 L13: 1.5980 L23: -3.0133 REMARK 3 S TENSOR REMARK 3 S11: -0.3086 S12: 2.5213 S13: 2.0587 REMARK 3 S21: -1.7028 S22: 1.0785 S23: -0.9107 REMARK 3 S31: -1.4928 S32: 1.7459 S33: -1.2229 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: chain 'B' and (resid 6 through 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): 79.9910 57.3715 3.3545 REMARK 3 T TENSOR REMARK 3 T11: 1.1543 T22: 0.9584 REMARK 3 T33: 0.7812 T12: 0.0789 REMARK 3 T13: 0.0501 T23: -0.1572 REMARK 3 L TENSOR REMARK 3 L11: 6.6047 L22: 5.1445 REMARK 3 L33: 6.9450 L12: -4.3626 REMARK 3 L13: 3.8027 L23: -5.9672 REMARK 3 S TENSOR REMARK 3 S11: 1.1218 S12: 1.4540 S13: 0.1034 REMARK 3 S21: -2.7859 S22: -1.5253 S23: -0.3918 REMARK 3 S31: 3.2605 S32: -0.1571 S33: 0.4241 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: chain 'B' and (resid 26 through 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): 95.5422 43.9407 20.2452 REMARK 3 T TENSOR REMARK 3 T11: 0.6297 T22: 0.5548 REMARK 3 T33: 0.8933 T12: 0.0497 REMARK 3 T13: 0.1256 T23: -0.0430 REMARK 3 L TENSOR REMARK 3 L11: 3.6489 L22: 8.5182 REMARK 3 L33: 6.6276 L12: -3.7712 REMARK 3 L13: 0.7276 L23: 1.3760 REMARK 3 S TENSOR REMARK 3 S11: 0.0659 S12: -0.1149 S13: -0.4405 REMARK 3 S21: -0.0103 S22: 0.1278 S23: -0.7761 REMARK 3 S31: 0.1865 S32: 0.4772 S33: -0.0693 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: chain 'B' and (resid 88 through 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): 97.4564 60.2213 13.8357 REMARK 3 T TENSOR REMARK 3 T11: 0.8185 T22: 1.1169 REMARK 3 T33: 1.0632 T12: 0.1270 REMARK 3 T13: 0.1630 T23: -0.0277 REMARK 3 L TENSOR REMARK 3 L11: 4.3043 L22: 2.9841 REMARK 3 L33: 2.8458 L12: -3.4234 REMARK 3 L13: -3.2483 L23: 2.6582 REMARK 3 S TENSOR REMARK 3 S11: -0.3703 S12: 0.1232 S13: 1.3252 REMARK 3 S21: -0.5340 S22: 1.4242 S23: -1.6644 REMARK 3 S31: -0.7760 S32: 2.6864 S33: -1.3681 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: chain 'C' and (resid 6 through 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): 120.0601 43.1230 -3.1551 REMARK 3 T TENSOR REMARK 3 T11: 1.0551 T22: 1.3493 REMARK 3 T33: 1.3455 T12: -0.0701 REMARK 3 T13: 0.1084 T23: 0.1311 REMARK 3 L TENSOR REMARK 3 L11: 3.8400 L22: 3.1538 REMARK 3 L33: 5.4729 L12: -3.3926 REMARK 3 L13: 4.7532 L23: -4.1822 REMARK 3 S TENSOR REMARK 3 S11: -0.2506 S12: 1.7100 S13: 1.7206 REMARK 3 S21: -1.4780 S22: -0.2067 S23: -1.2273 REMARK 3 S31: 0.7354 S32: 1.4909 S33: 0.5029 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: chain 'C' and (resid 26 through 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): 131.8599 32.7723 14.6407 REMARK 3 T TENSOR REMARK 3 T11: 0.6767 T22: 1.5622 REMARK 3 T33: 1.8171 T12: 0.2779 REMARK 3 T13: -0.0482 T23: -0.5718 REMARK 3 L TENSOR REMARK 3 L11: 2.1522 L22: 5.8633 REMARK 3 L33: 3.1003 L12: 3.0586 REMARK 3 L13: 1.3591 L23: 1.5111 REMARK 3 S TENSOR REMARK 3 S11: -0.6980 S12: -0.1001 S13: 1.8362 REMARK 3 S21: 1.1419 S22: 1.3914 S23: -2.1570 REMARK 3 S31: -0.1538 S32: 1.0120 S33: -0.3044 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: chain 'C' and (resid 41 through 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): 140.6160 27.3123 17.3849 REMARK 3 T TENSOR REMARK 3 T11: 0.7621 T22: 1.9305 REMARK 3 T33: 1.7964 T12: 0.1947 REMARK 3 T13: -0.2313 T23: -0.4521 REMARK 3 L TENSOR REMARK 3 L11: 9.8669 L22: 1.2495 REMARK 3 L33: 5.8616 L12: -3.0658 REMARK 3 L13: 0.5654 L23: 0.9054 REMARK 3 S TENSOR REMARK 3 S11: -0.4348 S12: -2.3197 S13: -0.1862 REMARK 3 S21: 1.2495 S22: 1.1995 S23: -2.1131 REMARK 3 S31: 0.4655 S32: 0.5805 S33: -0.3775 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: chain 'C' and (resid 56 through 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 137.4092 27.5434 6.4254 REMARK 3 T TENSOR REMARK 3 T11: 0.6299 T22: 1.7988 REMARK 3 T33: 1.3284 T12: 0.0849 REMARK 3 T13: -0.0303 T23: -0.4713 REMARK 3 L TENSOR REMARK 3 L11: 3.2468 L22: 5.7277 REMARK 3 L33: 4.9422 L12: 1.9152 REMARK 3 L13: -2.4542 L23: 2.2811 REMARK 3 S TENSOR REMARK 3 S11: -0.2288 S12: 1.1552 S13: -0.6598 REMARK 3 S21: 0.0683 S22: 0.7838 S23: -0.0095 REMARK 3 S31: 0.2670 S32: 0.5802 S33: -0.3917 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: chain 'C' and (resid 69 through 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): 144.9784 35.2544 9.8734 REMARK 3 T TENSOR REMARK 3 T11: 0.7656 T22: 1.7208 REMARK 3 T33: 1.8384 T12: -0.1126 REMARK 3 T13: 0.1773 T23: -0.6175 REMARK 3 L TENSOR REMARK 3 L11: 1.5480 L22: 2.4755 REMARK 3 L33: 3.3505 L12: -1.8860 REMARK 3 L13: -0.4404 L23: -0.4675 REMARK 3 S TENSOR REMARK 3 S11: -0.5222 S12: 0.4526 S13: 2.1572 REMARK 3 S21: 0.4819 S22: 0.3479 S23: -1.0405 REMARK 3 S31: 0.7304 S32: 1.4877 S33: -0.3784 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: chain 'C' and (resid 88 through 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): 125.8143 41.7885 17.0406 REMARK 3 T TENSOR REMARK 3 T11: 1.1365 T22: 1.4085 REMARK 3 T33: 1.5359 T12: 0.0186 REMARK 3 T13: -0.1287 T23: -0.3273 REMARK 3 L TENSOR REMARK 3 L11: 3.0942 L22: 5.5512 REMARK 3 L33: 5.6436 L12: 0.1771 REMARK 3 L13: -1.6934 L23: -5.2058 REMARK 3 S TENSOR REMARK 3 S11: -0.0634 S12: -1.2317 S13: 0.6091 REMARK 3 S21: 2.0435 S22: 0.3529 S23: 0.4692 REMARK 3 S31: -2.7556 S32: 1.2433 S33: -0.1996 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: chain 'D' and (resid 6 through 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): 125.2874 28.7180 19.5784 REMARK 3 T TENSOR REMARK 3 T11: 0.9895 T22: 1.6089 REMARK 3 T33: 1.0792 T12: 0.2343 REMARK 3 T13: 0.1283 T23: -0.0207 REMARK 3 L TENSOR REMARK 3 L11: 4.7452 L22: 6.8297 REMARK 3 L33: 9.3259 L12: -5.3389 REMARK 3 L13: 6.5091 L23: -6.3040 REMARK 3 S TENSOR REMARK 3 S11: -1.2574 S12: -3.0430 S13: -0.4363 REMARK 3 S21: 0.7265 S22: 0.8526 S23: -0.0703 REMARK 3 S31: 0.4762 S32: -1.9714 S33: 1.0128 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: chain 'D' and (resid 26 through 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): 113.5799 40.5738 2.8951 REMARK 3 T TENSOR REMARK 3 T11: 0.5487 T22: 0.9604 REMARK 3 T33: 1.0720 T12: -0.1019 REMARK 3 T13: 0.0707 T23: -0.4927 REMARK 3 L TENSOR REMARK 3 L11: 1.5884 L22: 8.3863 REMARK 3 L33: 6.4145 L12: -3.6540 REMARK 3 L13: -0.4816 L23: 1.8127 REMARK 3 S TENSOR REMARK 3 S11: -0.5401 S12: -0.6183 S13: -0.2683 REMARK 3 S21: -0.4468 S22: -0.9884 S23: -0.5739 REMARK 3 S31: -1.8739 S32: 0.3852 S33: -0.0498 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: chain 'D' and (resid 41 through 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): 104.9317 41.2549 -2.9875 REMARK 3 T TENSOR REMARK 3 T11: 0.6081 T22: 1.1388 REMARK 3 T33: 1.0234 T12: -0.1088 REMARK 3 T13: 0.0462 T23: 0.0554 REMARK 3 L TENSOR REMARK 3 L11: 9.2921 L22: 6.1634 REMARK 3 L33: 5.1511 L12: 0.3326 REMARK 3 L13: 3.4586 L23: 0.4256 REMARK 3 S TENSOR REMARK 3 S11: 0.1097 S12: 1.2409 S13: 1.7012 REMARK 3 S21: -1.1279 S22: 0.2485 S23: -0.0096 REMARK 3 S31: -0.8338 S32: 0.3171 S33: 0.0989 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: chain 'D' and (resid 56 through 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 107.5712 31.0104 1.8054 REMARK 3 T TENSOR REMARK 3 T11: 0.5737 T22: 0.8214 REMARK 3 T33: 1.2029 T12: -0.0690 REMARK 3 T13: 0.0525 T23: -0.0905 REMARK 3 L TENSOR REMARK 3 L11: 4.4637 L22: 3.5856 REMARK 3 L33: 4.0348 L12: -1.1471 REMARK 3 L13: 2.3734 L23: 1.1527 REMARK 3 S TENSOR REMARK 3 S11: 0.0525 S12: 0.3766 S13: -0.8601 REMARK 3 S21: -0.1502 S22: 0.6352 S23: -0.1890 REMARK 3 S31: 0.0499 S32: -0.1785 S33: -0.3712 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: chain 'D' and (resid 69 through 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): 100.3570 38.2317 7.2514 REMARK 3 T TENSOR REMARK 3 T11: 0.5375 T22: 0.8177 REMARK 3 T33: 0.9798 T12: 0.0054 REMARK 3 T13: 0.5226 T23: -0.2339 REMARK 3 L TENSOR REMARK 3 L11: 5.8905 L22: 6.3947 REMARK 3 L33: 3.2287 L12: -1.9940 REMARK 3 L13: 2.0194 L23: -0.7522 REMARK 3 S TENSOR REMARK 3 S11: -0.0392 S12: -0.7113 S13: 0.8325 REMARK 3 S21: -1.0732 S22: 0.4183 S23: 1.2348 REMARK 3 S31: -0.4854 S32: -0.5584 S33: 0.0364 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: chain 'D' and (resid 88 through 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): 119.7280 46.3688 10.3971 REMARK 3 T TENSOR REMARK 3 T11: 0.9938 T22: 1.4302 REMARK 3 T33: 1.3354 T12: 0.0037 REMARK 3 T13: 0.0107 T23: -0.5579 REMARK 3 L TENSOR REMARK 3 L11: 4.2822 L22: 8.7529 REMARK 3 L33: 6.3239 L12: 2.3328 REMARK 3 L13: -4.4830 L23: -5.9424 REMARK 3 S TENSOR REMARK 3 S11: 1.2227 S12: -0.9285 S13: 0.2988 REMARK 3 S21: 1.3258 S22: -0.0408 S23: 0.1255 REMARK 3 S31: -3.2157 S32: 1.0180 S33: -1.2137 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: chain 'E' and (resid 1 through 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 64.1012 68.7004 20.5939 REMARK 3 T TENSOR REMARK 3 T11: 1.6698 T22: 0.7347 REMARK 3 T33: 1.2455 T12: 0.3096 REMARK 3 T13: -0.0789 T23: 0.0227 REMARK 3 L TENSOR REMARK 3 L11: 4.2612 L22: 2.3339 REMARK 3 L33: 3.5692 L12: -2.5586 REMARK 3 L13: 3.7893 L23: -1.9231 REMARK 3 S TENSOR REMARK 3 S11: -0.2804 S12: 0.7432 S13: 1.6951 REMARK 3 S21: -0.8644 S22: -0.4640 S23: -1.6811 REMARK 3 S31: -2.6558 S32: -0.5663 S33: 0.8524 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: chain 'E' and (resid 6 through 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 80.0379 38.4209 24.6093 REMARK 3 T TENSOR REMARK 3 T11: 1.1035 T22: 0.8976 REMARK 3 T33: 1.3186 T12: 0.3014 REMARK 3 T13: 0.3277 T23: 0.1772 REMARK 3 L TENSOR REMARK 3 L11: 1.3493 L22: 2.0501 REMARK 3 L33: 1.8885 L12: 0.0334 REMARK 3 L13: -1.5335 L23: 1.4175 REMARK 3 S TENSOR REMARK 3 S11: -0.8527 S12: -0.4305 S13: -1.4352 REMARK 3 S21: 0.9700 S22: 0.5594 S23: 0.7412 REMARK 3 S31: 0.4481 S32: -0.0042 S33: 0.3694 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: chain 'F' and (resid 2 through 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 88.1113 30.5861 27.0984 REMARK 3 T TENSOR REMARK 3 T11: 1.2228 T22: 0.8321 REMARK 3 T33: 1.4947 T12: 0.3043 REMARK 3 T13: 0.2775 T23: 0.1039 REMARK 3 L TENSOR REMARK 3 L11: 9.1961 L22: 1.8761 REMARK 3 L33: 3.5910 L12: 4.0452 REMARK 3 L13: 1.0367 L23: -0.3248 REMARK 3 S TENSOR REMARK 3 S11: -0.0327 S12: -0.2474 S13: -0.6971 REMARK 3 S21: 1.4269 S22: 0.2662 S23: 0.6373 REMARK 3 S31: 0.5891 S32: 0.0497 S33: -0.1045 REMARK 3 TLS GROUP : 23 REMARK 3 SELECTION: chain 'F' and (resid 12 through 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 66.2294 55.5442 21.4238 REMARK 3 T TENSOR REMARK 3 T11: 1.0410 T22: 0.7579 REMARK 3 T33: 0.9935 T12: 0.2325 REMARK 3 T13: 0.1574 T23: 0.0685 REMARK 3 L TENSOR REMARK 3 L11: 3.5524 L22: 1.3318 REMARK 3 L33: 4.7050 L12: 0.4337 REMARK 3 L13: -2.8221 L23: 1.6071 REMARK 3 S TENSOR REMARK 3 S11: -1.1059 S12: -0.6938 S13: -0.5238 REMARK 3 S21: 0.3734 S22: 0.4247 S23: 0.1363 REMARK 3 S31: 0.1809 S32: -0.4121 S33: 0.7504 REMARK 3 TLS GROUP : 24 REMARK 3 SELECTION: chain 'G' and (resid 1 through 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 110.9948 21.9789 -4.7325 REMARK 3 T TENSOR REMARK 3 T11: 0.5178 T22: 1.0247 REMARK 3 T33: 1.3214 T12: -0.0200 REMARK 3 T13: 0.0873 T23: -0.1043 REMARK 3 L TENSOR REMARK 3 L11: 7.6025 L22: 5.3393 REMARK 3 L33: 8.6996 L12: 4.2500 REMARK 3 L13: 3.8844 L23: -2.2306 REMARK 3 S TENSOR REMARK 3 S11: -0.5520 S12: 0.6122 S13: 0.4010 REMARK 3 S21: -0.3106 S22: 0.9346 S23: -0.4991 REMARK 3 S31: -0.3168 S32: 0.7063 S33: -0.3157 REMARK 3 TLS GROUP : 25 REMARK 3 SELECTION: chain 'G' and (resid 11 through 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 132.5746 18.0410 5.1051 REMARK 3 T TENSOR REMARK 3 T11: 0.6979 T22: 1.5053 REMARK 3 T33: 1.7509 T12: 0.1358 REMARK 3 T13: -0.0016 T23: -0.2387 REMARK 3 L TENSOR REMARK 3 L11: 5.0233 L22: 7.8453 REMARK 3 L33: 6.2829 L12: -6.1264 REMARK 3 L13: -2.6207 L23: 1.5543 REMARK 3 S TENSOR REMARK 3 S11: -0.6622 S12: 1.0391 S13: -1.5118 REMARK 3 S21: -0.4670 S22: 0.7198 S23: 0.3985 REMARK 3 S31: 0.8701 S32: 1.6656 S33: 0.1279 REMARK 3 TLS GROUP : 26 REMARK 3 SELECTION: chain 'G' and (resid 16 through 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 151.8282 20.2360 2.0139 REMARK 3 T TENSOR REMARK 3 T11: 0.8368 T22: 2.3795 REMARK 3 T33: 1.9305 T12: 0.1889 REMARK 3 T13: 0.2533 T23: -0.6495 REMARK 3 L TENSOR REMARK 3 L11: 7.8318 L22: 6.7925 REMARK 3 L33: 1.3864 L12: -6.6782 REMARK 3 L13: 3.4380 L23: -2.8800 REMARK 3 S TENSOR REMARK 3 S11: -0.4100 S12: 0.0981 S13: 0.8066 REMARK 3 S21: -0.5862 S22: -0.1922 S23: 0.8074 REMARK 3 S31: 0.1731 S32: 0.8127 S33: 0.4006 REMARK 3 TLS GROUP : 27 REMARK 3 SELECTION: chain 'H' and (resid 2 through 6 ) REMARK 3 ORIGIN FOR THE GROUP (A): 154.6781 19.1369 8.8580 REMARK 3 T TENSOR REMARK 3 T11: 1.0056 T22: 2.2171 REMARK 3 T33: 1.7956 T12: 0.1923 REMARK 3 T13: -0.0491 T23: -0.5822 REMARK 3 L TENSOR REMARK 3 L11: 6.7726 L22: 6.4882 REMARK 3 L33: 4.3952 L12: -6.5588 REMARK 3 L13: -3.0218 L23: 3.5488 REMARK 3 S TENSOR REMARK 3 S11: -2.3620 S12: -1.0644 S13: -1.0374 REMARK 3 S21: 0.9562 S22: 1.6095 S23: 1.7180 REMARK 3 S31: 1.5541 S32: -0.2919 S33: 0.6737 REMARK 3 TLS GROUP : 28 REMARK 3 SELECTION: chain 'H' and (resid 7 through 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 131.5449 17.6706 0.1655 REMARK 3 T TENSOR REMARK 3 T11: 0.7645 T22: 1.8100 REMARK 3 T33: 1.7790 T12: 0.0621 REMARK 3 T13: 0.0068 T23: -0.6480 REMARK 3 L TENSOR REMARK 3 L11: 2.6897 L22: 2.1401 REMARK 3 L33: 0.6756 L12: -2.3834 REMARK 3 L13: 1.3904 L23: -1.2888 REMARK 3 S TENSOR REMARK 3 S11: 0.4097 S12: 0.5306 S13: -2.4497 REMARK 3 S21: 0.1007 S22: 0.3224 S23: -0.3135 REMARK 3 S31: 0.1269 S32: 1.3225 S33: -0.5582 REMARK 3 TLS GROUP : 29 REMARK 3 SELECTION: chain 'H' and (resid 17 through 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 109.4365 25.1335 -8.9237 REMARK 3 T TENSOR REMARK 3 T11: 0.6163 T22: 1.5232 REMARK 3 T33: 1.2625 T12: 0.0282 REMARK 3 T13: 0.2310 T23: -0.2173 REMARK 3 L TENSOR REMARK 3 L11: 5.7185 L22: 5.2142 REMARK 3 L33: 7.8783 L12: -0.2966 REMARK 3 L13: -0.7408 L23: -0.9352 REMARK 3 S TENSOR REMARK 3 S11: -0.4216 S12: 0.0951 S13: -0.8713 REMARK 3 S21: -0.1301 S22: 0.8732 S23: 0.5038 REMARK 3 S31: 0.0882 S32: -0.9123 S33: -0.4271 REMARK 3 TLS GROUP : 30 REMARK 3 SELECTION: chain 'H' and (resid 22 through 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 98.3682 18.2630 -18.0969 REMARK 3 T TENSOR REMARK 3 T11: 1.5895 T22: 1.4719 REMARK 3 T33: 1.2739 T12: -0.0903 REMARK 3 T13: 0.6515 T23: 0.1586 REMARK 3 L TENSOR REMARK 3 L11: 5.7230 L22: 5.9093 REMARK 3 L33: 2.0009 L12: 3.2213 REMARK 3 L13: 7.2701 L23: 2.3012 REMARK 3 S TENSOR REMARK 3 S11: -0.0935 S12: 2.3931 S13: -0.1643 REMARK 3 S21: -2.6369 S22: 3.3412 S23: -0.1230 REMARK 3 S31: -1.7305 S32: -2.0539 S33: -3.0227 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4OMY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-FEB-14. REMARK 100 THE RCSB ID CODE IS RCSB084695. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK HIGH-RESOLUTION REMARK 200 DOUBLE-CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22454 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.050 REMARK 200 RESOLUTION RANGE LOW (A) : 42.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04500 REMARK 200 FOR THE DATA SET : 24.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG-3350, 0.1 M SODIUM CITRATE/ REMARK 280 CITRIC ACID, AND 0.2 M SODIUM CITRATE, PH 4.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 22.56267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 45.12533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 GLU A 2 REMARK 465 HIS A 3 REMARK 465 ALA A 4 REMARK 465 MSE A 5 REMARK 465 ALA A 103 REMARK 465 ALA A 104 REMARK 465 THR A 105 REMARK 465 SER A 106 REMARK 465 VAL A 107 REMARK 465 VAL A 108 REMARK 465 ILE A 109 REMARK 465 GLU A 110 REMARK 465 LYS A 111 REMARK 465 PRO A 112 REMARK 465 PHE A 113 REMARK 465 VAL A 114 REMARK 465 ARG A 115 REMARK 465 LYS A 116 REMARK 465 SER A 117 REMARK 465 ALA A 118 REMARK 465 MSE B 1 REMARK 465 GLU B 2 REMARK 465 HIS B 3 REMARK 465 ALA B 4 REMARK 465 MSE B 5 REMARK 465 ALA B 103 REMARK 465 ALA B 104 REMARK 465 THR B 105 REMARK 465 SER B 106 REMARK 465 VAL B 107 REMARK 465 VAL B 108 REMARK 465 ILE B 109 REMARK 465 GLU B 110 REMARK 465 LYS B 111 REMARK 465 PRO B 112 REMARK 465 PHE B 113 REMARK 465 VAL B 114 REMARK 465 ARG B 115 REMARK 465 LYS B 116 REMARK 465 SER B 117 REMARK 465 ALA B 118 REMARK 465 MSE C 1 REMARK 465 GLU C 2 REMARK 465 HIS C 3 REMARK 465 ALA C 4 REMARK 465 MSE C 5 REMARK 465 ALA C 103 REMARK 465 ALA C 104 REMARK 465 THR C 105 REMARK 465 SER C 106 REMARK 465 VAL C 107 REMARK 465 VAL C 108 REMARK 465 ILE C 109 REMARK 465 GLU C 110 REMARK 465 LYS C 111 REMARK 465 PRO C 112 REMARK 465 PHE C 113 REMARK 465 VAL C 114 REMARK 465 ARG C 115 REMARK 465 LYS C 116 REMARK 465 SER C 117 REMARK 465 ALA C 118 REMARK 465 MSE D 1 REMARK 465 GLU D 2 REMARK 465 HIS D 3 REMARK 465 ALA D 4 REMARK 465 MSE D 5 REMARK 465 ALA D 103 REMARK 465 ALA D 104 REMARK 465 THR D 105 REMARK 465 SER D 106 REMARK 465 VAL D 107 REMARK 465 VAL D 108 REMARK 465 ILE D 109 REMARK 465 GLU D 110 REMARK 465 LYS D 111 REMARK 465 PRO D 112 REMARK 465 PHE D 113 REMARK 465 VAL D 114 REMARK 465 ARG D 115 REMARK 465 LYS D 116 REMARK 465 SER D 117 REMARK 465 ALA D 118 REMARK 465 DA F 1 REMARK 465 DA H 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN B 6 CG CD OE1 NE2 REMARK 470 LYS C 51 CG CD CE NZ REMARK 470 DT E 1 C7 REMARK 470 DT E 3 C7 REMARK 470 DT E 4 C7 REMARK 470 DT E 14 C7 REMARK 470 DT E 19 C7 REMARK 470 DT E 20 C7 REMARK 470 DT F 2 C7 REMARK 470 DT F 3 C7 REMARK 470 DT F 7 C7 REMARK 470 DT F 8 C7 REMARK 470 DT F 15 C7 REMARK 470 DT F 17 C7 REMARK 470 DT F 19 C7 REMARK 470 DT F 22 C7 REMARK 470 DT G 1 C7 REMARK 470 DT G 3 C7 REMARK 470 DT G 4 C7 REMARK 470 DT G 14 C7 REMARK 470 DT G 19 C7 REMARK 470 DT G 20 C7 REMARK 470 DT H 2 C7 REMARK 470 DT H 3 C7 REMARK 470 DT H 7 C7 REMARK 470 DT H 8 C7 REMARK 470 DT H 15 C7 REMARK 470 DT H 17 C7 REMARK 470 DT H 19 C7 REMARK 470 DT H 22 C7 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 42 NE ARG B 75 2.15 REMARK 500 NE2 HIS D 62 OP2 DC H 18 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA E 2 O3' DA E 2 C3' -0.067 REMARK 500 DG E 8 O3' DG E 8 C3' -0.044 REMARK 500 DT H 19 O3' DT H 19 C3' -0.038 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC E 12 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DG E 15 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT F 2 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DG G 15 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DG H 11 O4' - C4' - C3' ANGL. DEV. = -2.8 DEGREES REMARK 500 DG H 11 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DA H 21 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DT H 22 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 27 59.00 -90.81 REMARK 500 ALA A 78 -115.96 53.51 REMARK 500 ALA B 27 57.87 -107.55 REMARK 500 LYS B 40 93.55 -167.40 REMARK 500 ALA B 78 -120.25 54.29 REMARK 500 ALA C 27 56.92 -107.86 REMARK 500 ALA C 78 -119.01 54.05 REMARK 500 TYR C 101 -142.44 -103.27 REMARK 500 ALA D 27 56.71 -106.39 REMARK 500 ALA D 44 152.28 -47.13 REMARK 500 ALA D 78 -120.39 55.67 REMARK 500 TYR D 101 -130.08 -100.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL B 39 LYS B 40 138.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 LYS B 40 24.7 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4OMZ RELATED DB: PDB REMARK 900 RELATED ID: 4ON0 RELATED DB: PDB DBREF 4OMY A 1 118 UNP Q83TD2 Q83TD2_RHIFR 1 118 DBREF 4OMY B 1 118 UNP Q83TD2 Q83TD2_RHIFR 1 118 DBREF 4OMY C 1 118 UNP Q83TD2 Q83TD2_RHIFR 1 118 DBREF 4OMY D 1 118 UNP Q83TD2 Q83TD2_RHIFR 1 118 DBREF 4OMY E 1 22 PDB 4OMY 4OMY 1 22 DBREF 4OMY G 1 22 PDB 4OMY 4OMY 1 22 DBREF 4OMY F 1 22 PDB 4OMY 4OMY 1 22 DBREF 4OMY H 1 22 PDB 4OMY 4OMY 1 22 SEQRES 1 A 118 MSE GLU HIS ALA MSE GLN PRO LEU SER PRO GLU LYS HIS SEQRES 2 A 118 GLU GLU ALA GLU ILE ALA ALA GLY PHE LEU SER ALA MSE SEQRES 3 A 118 ALA ASN PRO LYS ARG LEU LEU ILE LEU ASP SER LEU VAL SEQRES 4 A 118 LYS GLU GLU MSE ALA VAL GLY ALA LEU ALA ASN LYS VAL SEQRES 5 A 118 GLY LEU SER GLN SER ALA LEU SER GLN HIS LEU SER LYS SEQRES 6 A 118 LEU ARG ALA GLN ASN LEU VAL SER THR ARG ARG ASP ALA SEQRES 7 A 118 GLN THR ILE TYR TYR SER SER SER SER ASP SER VAL MSE SEQRES 8 A 118 LYS ILE LEU GLY ALA LEU SER GLU ILE TYR GLY ALA ALA SEQRES 9 A 118 THR SER VAL VAL ILE GLU LYS PRO PHE VAL ARG LYS SER SEQRES 10 A 118 ALA SEQRES 1 B 118 MSE GLU HIS ALA MSE GLN PRO LEU SER PRO GLU LYS HIS SEQRES 2 B 118 GLU GLU ALA GLU ILE ALA ALA GLY PHE LEU SER ALA MSE SEQRES 3 B 118 ALA ASN PRO LYS ARG LEU LEU ILE LEU ASP SER LEU VAL SEQRES 4 B 118 LYS GLU GLU MSE ALA VAL GLY ALA LEU ALA ASN LYS VAL SEQRES 5 B 118 GLY LEU SER GLN SER ALA LEU SER GLN HIS LEU SER LYS SEQRES 6 B 118 LEU ARG ALA GLN ASN LEU VAL SER THR ARG ARG ASP ALA SEQRES 7 B 118 GLN THR ILE TYR TYR SER SER SER SER ASP SER VAL MSE SEQRES 8 B 118 LYS ILE LEU GLY ALA LEU SER GLU ILE TYR GLY ALA ALA SEQRES 9 B 118 THR SER VAL VAL ILE GLU LYS PRO PHE VAL ARG LYS SER SEQRES 10 B 118 ALA SEQRES 1 C 118 MSE GLU HIS ALA MSE GLN PRO LEU SER PRO GLU LYS HIS SEQRES 2 C 118 GLU GLU ALA GLU ILE ALA ALA GLY PHE LEU SER ALA MSE SEQRES 3 C 118 ALA ASN PRO LYS ARG LEU LEU ILE LEU ASP SER LEU VAL SEQRES 4 C 118 LYS GLU GLU MSE ALA VAL GLY ALA LEU ALA ASN LYS VAL SEQRES 5 C 118 GLY LEU SER GLN SER ALA LEU SER GLN HIS LEU SER LYS SEQRES 6 C 118 LEU ARG ALA GLN ASN LEU VAL SER THR ARG ARG ASP ALA SEQRES 7 C 118 GLN THR ILE TYR TYR SER SER SER SER ASP SER VAL MSE SEQRES 8 C 118 LYS ILE LEU GLY ALA LEU SER GLU ILE TYR GLY ALA ALA SEQRES 9 C 118 THR SER VAL VAL ILE GLU LYS PRO PHE VAL ARG LYS SER SEQRES 10 C 118 ALA SEQRES 1 D 118 MSE GLU HIS ALA MSE GLN PRO LEU SER PRO GLU LYS HIS SEQRES 2 D 118 GLU GLU ALA GLU ILE ALA ALA GLY PHE LEU SER ALA MSE SEQRES 3 D 118 ALA ASN PRO LYS ARG LEU LEU ILE LEU ASP SER LEU VAL SEQRES 4 D 118 LYS GLU GLU MSE ALA VAL GLY ALA LEU ALA ASN LYS VAL SEQRES 5 D 118 GLY LEU SER GLN SER ALA LEU SER GLN HIS LEU SER LYS SEQRES 6 D 118 LEU ARG ALA GLN ASN LEU VAL SER THR ARG ARG ASP ALA SEQRES 7 D 118 GLN THR ILE TYR TYR SER SER SER SER ASP SER VAL MSE SEQRES 8 D 118 LYS ILE LEU GLY ALA LEU SER GLU ILE TYR GLY ALA ALA SEQRES 9 D 118 THR SER VAL VAL ILE GLU LYS PRO PHE VAL ARG LYS SER SEQRES 10 D 118 ALA SEQRES 1 E 22 DT DA DT DT DA DG DA DG DA DA DC DC DC SEQRES 2 E 22 DT DG DA DA DG DT DT DA DA SEQRES 1 F 22 DA DT DT DA DA DC DT DT DC DA DG DG DG SEQRES 2 F 22 DT DT DC DT DC DT DA DA DT SEQRES 1 G 22 DT DA DT DT DA DG DA DG DA DA DC DC DC SEQRES 2 G 22 DT DG DA DA DG DT DT DA DA SEQRES 1 H 22 DA DT DT DA DA DC DT DT DC DA DG DG DG SEQRES 2 H 22 DT DT DC DT DC DT DA DA DT MODRES 4OMY MSE A 26 MET SELENOMETHIONINE MODRES 4OMY MSE A 43 MET SELENOMETHIONINE MODRES 4OMY MSE A 91 MET SELENOMETHIONINE MODRES 4OMY MSE B 26 MET SELENOMETHIONINE MODRES 4OMY MSE B 43 MET SELENOMETHIONINE MODRES 4OMY MSE B 91 MET SELENOMETHIONINE MODRES 4OMY MSE C 26 MET SELENOMETHIONINE MODRES 4OMY MSE C 43 MET SELENOMETHIONINE MODRES 4OMY MSE C 91 MET SELENOMETHIONINE MODRES 4OMY MSE D 26 MET SELENOMETHIONINE MODRES 4OMY MSE D 43 MET SELENOMETHIONINE MODRES 4OMY MSE D 91 MET SELENOMETHIONINE HET MSE A 26 8 HET MSE A 43 8 HET MSE A 91 8 HET MSE B 26 8 HET MSE B 43 8 HET MSE B 91 8 HET MSE C 26 8 HET MSE C 43 8 HET MSE C 91 8 HET MSE D 26 8 HET MSE D 43 8 HET MSE D 91 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 12(C5 H11 N O2 SE) HELIX 1 1 SER A 9 ALA A 27 1 19 HELIX 2 2 ASN A 28 GLU A 41 1 14 HELIX 3 3 VAL A 45 GLY A 53 1 9 HELIX 4 4 SER A 55 GLN A 69 1 15 HELIX 5 5 SER A 87 GLY A 102 1 16 HELIX 6 6 SER B 9 MSE B 26 1 18 HELIX 7 7 ASN B 28 LYS B 40 1 13 HELIX 8 8 VAL B 45 VAL B 52 1 8 HELIX 9 9 SER B 55 GLN B 69 1 15 HELIX 10 10 SER B 87 GLY B 102 1 16 HELIX 11 11 SER C 9 MSE C 26 1 18 HELIX 12 12 ASN C 28 GLU C 41 1 14 HELIX 13 13 VAL C 45 GLY C 53 1 9 HELIX 14 14 SER C 55 GLN C 69 1 15 HELIX 15 15 SER C 87 TYR C 101 1 15 HELIX 16 16 SER D 9 MSE D 26 1 18 HELIX 17 17 ASN D 28 GLU D 41 1 14 HELIX 18 18 VAL D 45 GLY D 53 1 9 HELIX 19 19 SER D 55 GLN D 69 1 15 HELIX 20 20 SER D 87 TYR D 101 1 15 SHEET 1 A 3 MSE A 43 ALA A 44 0 SHEET 2 A 3 THR A 80 SER A 84 -1 O TYR A 83 N MSE A 43 SHEET 3 A 3 SER A 73 ASP A 77 -1 N ARG A 75 O TYR A 82 SHEET 1 B 3 MSE B 43 ALA B 44 0 SHEET 2 B 3 THR B 80 SER B 84 -1 O TYR B 83 N MSE B 43 SHEET 3 B 3 SER B 73 ASP B 77 -1 N ARG B 75 O TYR B 82 SHEET 1 C 3 MSE C 43 ALA C 44 0 SHEET 2 C 3 THR C 80 SER C 84 -1 O TYR C 83 N MSE C 43 SHEET 3 C 3 SER C 73 ASP C 77 -1 N ARG C 75 O TYR C 82 SHEET 1 D 3 MSE D 43 ALA D 44 0 SHEET 2 D 3 THR D 80 SER D 84 -1 O TYR D 83 N MSE D 43 SHEET 3 D 3 SER D 73 ASP D 77 -1 N ARG D 75 O TYR D 82 LINK C ALA A 25 N MSE A 26 1555 1555 1.34 LINK C MSE A 26 N ALA A 27 1555 1555 1.33 LINK C GLU A 42 N MSE A 43 1555 1555 1.32 LINK C MSE A 43 N ALA A 44 1555 1555 1.32 LINK C VAL A 90 N MSE A 91 1555 1555 1.32 LINK C MSE A 91 N LYS A 92 1555 1555 1.34 LINK C ALA B 25 N MSE B 26 1555 1555 1.33 LINK C MSE B 26 N ALA B 27 1555 1555 1.33 LINK C GLU B 42 N MSE B 43 1555 1555 1.33 LINK C MSE B 43 N ALA B 44 1555 1555 1.33 LINK C VAL B 90 N MSE B 91 1555 1555 1.33 LINK C MSE B 91 N LYS B 92 1555 1555 1.33 LINK C ALA C 25 N MSE C 26 1555 1555 1.33 LINK C MSE C 26 N ALA C 27 1555 1555 1.33 LINK C GLU C 42 N MSE C 43 1555 1555 1.33 LINK C MSE C 43 N ALA C 44 1555 1555 1.33 LINK C VAL C 90 N MSE C 91 1555 1555 1.33 LINK C MSE C 91 N LYS C 92 1555 1555 1.34 LINK C ALA D 25 N MSE D 26 1555 1555 1.32 LINK C MSE D 26 N ALA D 27 1555 1555 1.33 LINK C GLU D 42 N MSE D 43 1555 1555 1.32 LINK C MSE D 43 N ALA D 44 1555 1555 1.33 LINK C VAL D 90 N MSE D 91 1555 1555 1.32 LINK C MSE D 91 N LYS D 92 1555 1555 1.34 CRYST1 131.019 131.019 67.688 90.00 90.00 120.00 P 31 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007632 0.004407 0.000000 0.00000 SCALE2 0.000000 0.008813 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014774 0.00000