HEADER HYDROLASE 28-JAN-14 4ON1 TITLE CRYSTAL STRUCTURE OF METALLOPROTEINASE-II FROM BACTEROIDES FRAGILIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE METALLOPROTEASE II; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES FRAGILIS; SOURCE 3 ORGANISM_TAXID: 817; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET101 KEYWDS PATHOGENICITY ISLAND, HUMAN PATHOGEN, FRAGILYSIN, METALLOPROTEINASES, KEYWDS 2 EXTRACELLULAR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.E.ALESHIN,R.C.LIDDINGTON,S.A.SHIRYAEV,A.Y.STRONGIN REVDAT 3 28-FEB-24 4ON1 1 REMARK LINK REVDAT 2 18-JUN-14 4ON1 1 JRNL REVDAT 1 09-APR-14 4ON1 0 JRNL AUTH S.A.SHIRYAEV,A.E.ALESHIN,N.MURANAKA,M.KUKREJA, JRNL AUTH 2 D.A.ROUTENBERG,A.G.REMACLE,R.C.LIDDINGTON,P.CIEPLAK, JRNL AUTH 3 I.A.KOZLOV,A.Y.STRONGIN JRNL TITL STRUCTURAL AND FUNCTIONAL DIVERSITY OF METALLOPROTEINASES JRNL TITL 2 ENCODED BY THE BACTEROIDES FRAGILIS PATHOGENICITY ISLAND. JRNL REF FEBS J. V. 281 2487 2014 JRNL REFN ISSN 1742-464X JRNL PMID 24698179 JRNL DOI 10.1111/FEBS.12804 REMARK 2 REMARK 2 RESOLUTION. 2.13 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.13 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 41241 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2064 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.3283 - 5.2318 1.00 2828 149 0.1779 0.1979 REMARK 3 2 5.2318 - 4.1536 1.00 2683 142 0.1394 0.1588 REMARK 3 3 4.1536 - 3.6289 1.00 2657 138 0.1401 0.1631 REMARK 3 4 3.6289 - 3.2972 1.00 2638 140 0.1482 0.2007 REMARK 3 5 3.2972 - 3.0609 1.00 2615 137 0.1634 0.2325 REMARK 3 6 3.0609 - 2.8805 1.00 2606 139 0.1667 0.1874 REMARK 3 7 2.8805 - 2.7363 1.00 2599 136 0.1656 0.2143 REMARK 3 8 2.7363 - 2.6172 1.00 2569 136 0.1582 0.2128 REMARK 3 9 2.6172 - 2.5164 1.00 2625 138 0.1656 0.2196 REMARK 3 10 2.5164 - 2.4296 1.00 2591 137 0.1589 0.2225 REMARK 3 11 2.4296 - 2.3536 1.00 2566 135 0.1692 0.2465 REMARK 3 12 2.3536 - 2.2864 1.00 2592 136 0.1704 0.2354 REMARK 3 13 2.2864 - 2.2262 1.00 2537 135 0.1665 0.2390 REMARK 3 14 2.2262 - 2.1719 1.00 2619 137 0.1736 0.2322 REMARK 3 15 2.1719 - 2.1225 0.97 2452 129 0.1898 0.2267 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.870 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 5413 REMARK 3 ANGLE : 0.916 7330 REMARK 3 CHIRALITY : 0.038 814 REMARK 3 PLANARITY : 0.004 937 REMARK 3 DIHEDRAL : 14.329 1979 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 217 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.5654 108.9250 136.7601 REMARK 3 T TENSOR REMARK 3 T11: 0.1394 T22: 0.1086 REMARK 3 T33: 0.1137 T12: 0.0220 REMARK 3 T13: 0.0049 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 1.2253 L22: 2.4641 REMARK 3 L33: 1.2401 L12: 0.1819 REMARK 3 L13: -0.1151 L23: 0.4114 REMARK 3 S TENSOR REMARK 3 S11: -0.0468 S12: -0.0552 S13: -0.1632 REMARK 3 S21: 0.1303 S22: 0.0065 S23: -0.1292 REMARK 3 S31: 0.1749 S32: 0.1282 S33: 0.0085 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 218 THROUGH 396 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.0284 126.7506 146.0309 REMARK 3 T TENSOR REMARK 3 T11: 0.0803 T22: 0.1000 REMARK 3 T33: 0.1068 T12: -0.0202 REMARK 3 T13: 0.0014 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 1.1626 L22: 1.9483 REMARK 3 L33: 2.3263 L12: 0.2466 REMARK 3 L13: -0.5320 L23: -0.8672 REMARK 3 S TENSOR REMARK 3 S11: 0.0423 S12: -0.1054 S13: 0.0029 REMARK 3 S21: 0.1376 S22: -0.0574 S23: -0.0594 REMARK 3 S31: -0.1180 S32: 0.1754 S33: -0.0007 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 32 THROUGH 217 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.4506 89.7919 163.6165 REMARK 3 T TENSOR REMARK 3 T11: 0.1592 T22: 0.1776 REMARK 3 T33: 0.2060 T12: -0.0104 REMARK 3 T13: 0.0084 T23: 0.0052 REMARK 3 L TENSOR REMARK 3 L11: 0.6721 L22: 2.1525 REMARK 3 L33: 2.2213 L12: 0.0612 REMARK 3 L13: 0.0646 L23: 1.2355 REMARK 3 S TENSOR REMARK 3 S11: 0.0173 S12: -0.0229 S13: -0.0707 REMARK 3 S21: -0.0523 S22: -0.0647 S23: 0.1368 REMARK 3 S31: 0.0417 S32: -0.2129 S33: 0.0356 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 218 THROUGH 396 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.7219 104.4350 177.3813 REMARK 3 T TENSOR REMARK 3 T11: 0.0928 T22: 0.1226 REMARK 3 T33: 0.0828 T12: -0.0110 REMARK 3 T13: 0.0110 T23: -0.0174 REMARK 3 L TENSOR REMARK 3 L11: 1.3892 L22: 1.7471 REMARK 3 L33: 2.4253 L12: 0.1241 REMARK 3 L13: -0.3571 L23: -0.7983 REMARK 3 S TENSOR REMARK 3 S11: 0.0273 S12: -0.0230 S13: -0.0440 REMARK 3 S21: 0.0986 S22: 0.0055 S23: 0.0657 REMARK 3 S31: -0.0716 S32: -0.0386 S33: -0.0214 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ON1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000084698. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 12.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03319 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41324 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.130 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.40 REMARK 200 R MERGE (I) : 0.13500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.13 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.80 REMARK 200 R MERGE FOR SHELL (I) : 0.58000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: WELL SOLUTION: 20% PEG3330, 0.2M MGCL2 REMARK 280 CRYSTALLIZATION DROP: 50% OF 25 MM HEPES BUFFER, 100 MM NACL, 4 REMARK 280 MM CACL2 AND 50% OF THE WELL SOLUTION, PH 7.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.21200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.10650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.19750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.10650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.21200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 57.19750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 18 REMARK 465 CYS A 19 REMARK 465 ALA A 20 REMARK 465 ASP A 21 REMARK 465 ASP A 22 REMARK 465 LEU A 23 REMARK 465 LEU A 24 REMARK 465 HIS A 25 REMARK 465 VAL A 26 REMARK 465 GLU A 27 REMARK 465 GLU A 28 REMARK 465 THR A 29 REMARK 465 ALA A 30 REMARK 465 SER A 31 REMARK 465 SER A 145 REMARK 465 ALA A 146 REMARK 465 SER A 147 REMARK 465 SER A 148 REMARK 465 ASP A 149 REMARK 465 THR A 150 REMARK 465 SER A 151 REMARK 465 GLU A 161 REMARK 465 ASP A 162 REMARK 465 THR A 163 REMARK 465 ARG A 164 REMARK 465 SER A 165 REMARK 465 GLY A 166 REMARK 465 LYS A 167 REMARK 465 SER A 168 REMARK 465 LYS A 198 REMARK 465 LEU A 199 REMARK 465 SER A 200 REMARK 465 THR A 201 REMARK 465 ILE A 202 REMARK 465 ASP A 203 REMARK 465 LYS A 204 REMARK 465 ASN A 205 REMARK 465 SER A 206 REMARK 465 ILE A 207 REMARK 465 LEU A 208 REMARK 465 SER A 209 REMARK 465 LEU A 210 REMARK 465 SER A 211 REMARK 465 SER A 212 REMARK 465 ARG A 213 REMARK 465 ALA B 18 REMARK 465 CYS B 19 REMARK 465 ALA B 20 REMARK 465 ASP B 21 REMARK 465 ASP B 22 REMARK 465 LEU B 23 REMARK 465 LEU B 24 REMARK 465 HIS B 25 REMARK 465 VAL B 26 REMARK 465 GLU B 27 REMARK 465 GLU B 28 REMARK 465 THR B 29 REMARK 465 ALA B 30 REMARK 465 SER B 31 REMARK 465 LEU B 144 REMARK 465 SER B 145 REMARK 465 ALA B 146 REMARK 465 SER B 147 REMARK 465 SER B 148 REMARK 465 ASP B 149 REMARK 465 THR B 150 REMARK 465 SER B 151 REMARK 465 GLU B 161 REMARK 465 ASP B 162 REMARK 465 THR B 163 REMARK 465 ARG B 164 REMARK 465 SER B 165 REMARK 465 GLY B 166 REMARK 465 LYS B 167 REMARK 465 SER B 168 REMARK 465 LYS B 198 REMARK 465 LEU B 199 REMARK 465 SER B 200 REMARK 465 THR B 201 REMARK 465 ILE B 202 REMARK 465 ASP B 203 REMARK 465 LYS B 204 REMARK 465 ASN B 205 REMARK 465 SER B 206 REMARK 465 ILE B 207 REMARK 465 LEU B 208 REMARK 465 SER B 209 REMARK 465 LEU B 210 REMARK 465 SER B 211 REMARK 465 SER B 212 REMARK 465 ARG B 213 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 352 CG CD OE1 OE2 REMARK 470 GLU B 352 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 291 O HOH B 685 2.15 REMARK 500 OD1 ASN B 285 O HOH B 696 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 56 -71.70 -125.82 REMARK 500 LYS A 98 -8.38 67.26 REMARK 500 GLN A 296 41.18 -104.62 REMARK 500 PRO A 379 49.52 -81.94 REMARK 500 SER B 56 -72.18 -126.27 REMARK 500 LYS B 98 -15.35 69.04 REMARK 500 TYR B 216 -48.25 -141.92 REMARK 500 ASP B 274 24.50 -59.36 REMARK 500 GLN B 296 40.38 -105.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 215 TYR A 216 -147.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 400 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 193 OD2 REMARK 620 2 ASP A 193 OD1 58.3 REMARK 620 3 HIS A 351 NE2 87.5 144.9 REMARK 620 4 HIS A 355 NE2 101.4 93.1 102.1 REMARK 620 5 HIS A 361 NE2 146.6 96.8 110.6 101.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 400 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 193 OD1 REMARK 620 2 ASP B 193 OD2 58.5 REMARK 620 3 HIS B 351 NE2 143.4 86.7 REMARK 620 4 HIS B 355 NE2 95.1 101.0 102.8 REMARK 620 5 HIS B 361 NE2 100.5 150.4 106.6 101.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 401 DBREF 4ON1 A 18 396 UNP O68424 O68424_BACFG 18 396 DBREF 4ON1 B 18 396 UNP O68424 O68424_BACFG 18 396 SEQRES 1 A 379 ALA CYS ALA ASP ASP LEU LEU HIS VAL GLU GLU THR ALA SEQRES 2 A 379 SER PRO GLN LEU GLU HIS VAL LEU ASN LEU ARG SER MET SEQRES 3 A 379 ASP TYR GLU ASP LEU ALA GLY VAL LEU SER LYS ILE SER SEQRES 4 A 379 ASN THR GLU HIS THR ILE MET LEU GLN GLU GLY SER GLU SEQRES 5 A 379 LEU TRP THR THR SER ILE LYS ALA ILE HIS GLY VAL GLU SEQRES 6 A 379 ILE GLU GLU SER ASN ARG PRO VAL TYR LEU PHE GLU GLY SEQRES 7 A 379 GLN ASP LYS ASP SER ILE ASN ALA ILE LEU SER GLN SER SEQRES 8 A 379 TYR ALA THR ILE ARG LEU GLN ARG GLY GLY ASP LEU ILE SEQRES 9 A 379 ASP TYR ILE VAL TYR LYS ASP LYS GLU ARG MET ALA GLU SEQRES 10 A 379 ILE ALA ASN TYR TYR GLN ASN HIS TYR LEU SER ALA SER SEQRES 11 A 379 SER ASP THR SER ASP LYS ILE VAL VAL CYS ASN THR GLY SEQRES 12 A 379 GLU ASP THR ARG SER GLY LYS SER ASP ILE LYS ASN ILE SEQRES 13 A 379 ARG ILE ASP ILE THR LYS ALA ILE GLY ASN ASN PRO PHE SEQRES 14 A 379 LYS GLY LEU PRO ILE LYS ASP TYR PRO THR GLU LYS LEU SEQRES 15 A 379 SER THR ILE ASP LYS ASN SER ILE LEU SER LEU SER SER SEQRES 16 A 379 ARG ALA THR TYR PRO ALA THR LEU GLU PHE MET LEU ILE SEQRES 17 A 379 LYS GLU LYS ASP GLY GLY SER LEU GLU HIS ASP ILE THR SEQRES 18 A 379 SER GLN ILE GLN ALA VAL THR THR SER LEU LYS PHE LEU SEQRES 19 A 379 ILE ASP SER GLY PHE ILE THR VAL LYS TYR THR ILE LYS SEQRES 20 A 379 ASP SER SER HIS LYS GLY GLY ALA SER ASP TYR GLU VAL SEQRES 21 A 379 SER ALA LEU GLU SER PHE GLN ASN TYR LEU ARG SER TRP SEQRES 22 A 379 ASP GLU VAL LYS GLY GLN ASP LYS LYS PRO TYR ILE LEU SEQRES 23 A 379 LEU ARG ASP GLY THR TRP ASP SER GLY LYS THR PHE GLY SEQRES 24 A 379 TYR ALA SER GLY ILE GLY VAL ILE HIS LEU ASN ASN PRO SEQRES 25 A 379 ARG GLY ASN PHE GLU VAL ALA ALA ILE SER THR THR SER SEQRES 26 A 379 SER SER HIS PRO TYR THR LEU ALA HIS GLU ILE GLY HIS SEQRES 27 A 379 LEU LEU GLY ALA GLU HIS VAL ASP ASN GLU GLN ASP LEU SEQRES 28 A 379 MET TYR THR TRP TYR SER PRO GLN VAL THR PRO ASN HIS SEQRES 29 A 379 LEU SER ALA ASP ASN TRP VAL ARG MET LEU GLU CYS ILE SEQRES 30 A 379 GLN LYS SEQRES 1 B 379 ALA CYS ALA ASP ASP LEU LEU HIS VAL GLU GLU THR ALA SEQRES 2 B 379 SER PRO GLN LEU GLU HIS VAL LEU ASN LEU ARG SER MET SEQRES 3 B 379 ASP TYR GLU ASP LEU ALA GLY VAL LEU SER LYS ILE SER SEQRES 4 B 379 ASN THR GLU HIS THR ILE MET LEU GLN GLU GLY SER GLU SEQRES 5 B 379 LEU TRP THR THR SER ILE LYS ALA ILE HIS GLY VAL GLU SEQRES 6 B 379 ILE GLU GLU SER ASN ARG PRO VAL TYR LEU PHE GLU GLY SEQRES 7 B 379 GLN ASP LYS ASP SER ILE ASN ALA ILE LEU SER GLN SER SEQRES 8 B 379 TYR ALA THR ILE ARG LEU GLN ARG GLY GLY ASP LEU ILE SEQRES 9 B 379 ASP TYR ILE VAL TYR LYS ASP LYS GLU ARG MET ALA GLU SEQRES 10 B 379 ILE ALA ASN TYR TYR GLN ASN HIS TYR LEU SER ALA SER SEQRES 11 B 379 SER ASP THR SER ASP LYS ILE VAL VAL CYS ASN THR GLY SEQRES 12 B 379 GLU ASP THR ARG SER GLY LYS SER ASP ILE LYS ASN ILE SEQRES 13 B 379 ARG ILE ASP ILE THR LYS ALA ILE GLY ASN ASN PRO PHE SEQRES 14 B 379 LYS GLY LEU PRO ILE LYS ASP TYR PRO THR GLU LYS LEU SEQRES 15 B 379 SER THR ILE ASP LYS ASN SER ILE LEU SER LEU SER SER SEQRES 16 B 379 ARG ALA THR TYR PRO ALA THR LEU GLU PHE MET LEU ILE SEQRES 17 B 379 LYS GLU LYS ASP GLY GLY SER LEU GLU HIS ASP ILE THR SEQRES 18 B 379 SER GLN ILE GLN ALA VAL THR THR SER LEU LYS PHE LEU SEQRES 19 B 379 ILE ASP SER GLY PHE ILE THR VAL LYS TYR THR ILE LYS SEQRES 20 B 379 ASP SER SER HIS LYS GLY GLY ALA SER ASP TYR GLU VAL SEQRES 21 B 379 SER ALA LEU GLU SER PHE GLN ASN TYR LEU ARG SER TRP SEQRES 22 B 379 ASP GLU VAL LYS GLY GLN ASP LYS LYS PRO TYR ILE LEU SEQRES 23 B 379 LEU ARG ASP GLY THR TRP ASP SER GLY LYS THR PHE GLY SEQRES 24 B 379 TYR ALA SER GLY ILE GLY VAL ILE HIS LEU ASN ASN PRO SEQRES 25 B 379 ARG GLY ASN PHE GLU VAL ALA ALA ILE SER THR THR SER SEQRES 26 B 379 SER SER HIS PRO TYR THR LEU ALA HIS GLU ILE GLY HIS SEQRES 27 B 379 LEU LEU GLY ALA GLU HIS VAL ASP ASN GLU GLN ASP LEU SEQRES 28 B 379 MET TYR THR TRP TYR SER PRO GLN VAL THR PRO ASN HIS SEQRES 29 B 379 LEU SER ALA ASP ASN TRP VAL ARG MET LEU GLU CYS ILE SEQRES 30 B 379 GLN LYS HET ZN A 400 1 HET ZN B 400 1 HET GOL B 401 6 HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ZN 2(ZN 2+) FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *429(H2 O) HELIX 1 1 ASP A 44 SER A 53 1 10 HELIX 2 2 ASP A 128 LEU A 144 1 17 HELIX 3 3 ILE A 177 ASN A 183 1 7 HELIX 4 4 LEU A 233 LEU A 248 1 16 HELIX 5 5 LEU A 248 ASP A 253 1 6 HELIX 6 6 TYR A 275 SER A 289 1 15 HELIX 7 7 TRP A 290 LYS A 294 5 5 HELIX 8 8 TYR A 347 GLY A 358 1 12 HELIX 9 9 SER A 383 LYS A 396 1 14 HELIX 10 10 ASP B 44 SER B 53 1 10 HELIX 11 11 ASP B 128 TYR B 143 1 16 HELIX 12 12 ILE B 177 ASN B 183 1 7 HELIX 13 13 LEU B 233 LEU B 248 1 16 HELIX 14 14 LEU B 248 ASP B 253 1 6 HELIX 15 15 TYR B 275 SER B 289 1 15 HELIX 16 16 TRP B 290 LYS B 294 5 5 HELIX 17 17 TYR B 347 GLY B 358 1 12 HELIX 18 18 SER B 383 LYS B 396 1 14 SHEET 1 A 9 HIS A 36 ASN A 39 0 SHEET 2 A 9 HIS A 60 GLU A 66 1 O MET A 63 N HIS A 36 SHEET 3 A 9 GLU A 69 ALA A 77 -1 O THR A 73 N ILE A 62 SHEET 4 A 9 ARG A 88 GLY A 95 -1 O GLU A 94 N LYS A 76 SHEET 5 A 9 ILE A 101 LEU A 105 -1 O ILE A 101 N GLY A 95 SHEET 6 A 9 TYR A 109 ARG A 116 -1 O ARG A 113 N ASN A 102 SHEET 7 A 9 ASP A 119 TYR A 126 -1 O ILE A 121 N LEU A 114 SHEET 8 A 9 ASN A 172 ASP A 176 -1 O ILE A 173 N ILE A 124 SHEET 9 A 9 VAL A 155 ASN A 158 -1 N VAL A 156 O ARG A 174 SHEET 1 B10 HIS A 36 ASN A 39 0 SHEET 2 B10 HIS A 60 GLU A 66 1 O MET A 63 N HIS A 36 SHEET 3 B10 GLU A 69 ALA A 77 -1 O THR A 73 N ILE A 62 SHEET 4 B10 ARG A 88 GLY A 95 -1 O GLU A 94 N LYS A 76 SHEET 5 B10 VAL A 81 GLU A 85 -1 N GLU A 85 O ARG A 88 SHEET 6 B10 ILE A 257 ASP A 265 1 O TYR A 261 N GLU A 82 SHEET 7 B10 ALA A 218 LYS A 226 1 N PHE A 222 O LYS A 260 SHEET 8 B10 TYR A 301 ARG A 305 1 O LEU A 304 N ILE A 225 SHEET 9 B10 ALA A 336 THR A 340 1 O SER A 339 N LEU A 303 SHEET 10 B10 GLY A 316 ALA A 318 -1 N TYR A 317 O ILE A 338 SHEET 1 C 9 HIS B 36 ASN B 39 0 SHEET 2 C 9 HIS B 60 GLU B 66 1 O MET B 63 N HIS B 36 SHEET 3 C 9 GLU B 69 ALA B 77 -1 O THR B 73 N ILE B 62 SHEET 4 C 9 ARG B 88 GLY B 95 -1 O GLU B 94 N LYS B 76 SHEET 5 C 9 ILE B 101 LEU B 105 -1 O ILE B 101 N GLY B 95 SHEET 6 C 9 TYR B 109 ARG B 116 -1 O ARG B 113 N ASN B 102 SHEET 7 C 9 ASP B 119 TYR B 126 -1 O ILE B 121 N LEU B 114 SHEET 8 C 9 ASN B 172 ASP B 176 -1 O ILE B 175 N ASP B 122 SHEET 9 C 9 VAL B 155 ASN B 158 -1 N VAL B 156 O ARG B 174 SHEET 1 D10 HIS B 36 ASN B 39 0 SHEET 2 D10 HIS B 60 GLU B 66 1 O MET B 63 N HIS B 36 SHEET 3 D10 GLU B 69 ALA B 77 -1 O THR B 73 N ILE B 62 SHEET 4 D10 ARG B 88 GLY B 95 -1 O GLU B 94 N LYS B 76 SHEET 5 D10 VAL B 81 GLU B 85 -1 N GLU B 85 O ARG B 88 SHEET 6 D10 ILE B 257 ASP B 265 1 O TYR B 261 N GLU B 82 SHEET 7 D10 ALA B 218 LYS B 226 1 N PHE B 222 O LYS B 260 SHEET 8 D10 TYR B 301 ARG B 305 1 O LEU B 304 N ILE B 225 SHEET 9 D10 ALA B 336 THR B 340 1 O SER B 339 N LEU B 303 SHEET 10 D10 GLY B 316 ALA B 318 -1 N TYR B 317 O ILE B 338 LINK OD2 ASP A 193 ZN ZN A 400 1555 1555 2.16 LINK OD1 ASP A 193 ZN ZN A 400 1555 1555 2.30 LINK NE2 HIS A 351 ZN ZN A 400 1555 1555 2.02 LINK NE2 HIS A 355 ZN ZN A 400 1555 1555 2.01 LINK NE2 HIS A 361 ZN ZN A 400 1555 1555 1.98 LINK OD1 ASP B 193 ZN ZN B 400 1555 1555 2.22 LINK OD2 ASP B 193 ZN ZN B 400 1555 1555 2.25 LINK NE2 HIS B 351 ZN ZN B 400 1555 1555 1.98 LINK NE2 HIS B 355 ZN ZN B 400 1555 1555 2.01 LINK NE2 HIS B 361 ZN ZN B 400 1555 1555 1.96 CISPEP 1 TYR A 216 PRO A 217 0 2.26 CISPEP 2 TYR B 216 PRO B 217 0 0.00 SITE 1 AC1 5 ILE A 191 ASP A 193 HIS A 351 HIS A 355 SITE 2 AC1 5 HIS A 361 SITE 1 AC2 5 ILE B 191 ASP B 193 HIS B 351 HIS B 355 SITE 2 AC2 5 HIS B 361 SITE 1 AC3 5 ASP A 44 ASP A 47 LYS A 171 ASP B 44 SITE 2 AC3 5 ASP B 47 CRYST1 44.424 114.395 140.213 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022510 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008742 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007132 0.00000