data_4ONB # _entry.id 4ONB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4ONB RCSB RCSB084708 WWPDB D_1000084708 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2014-09-17 _pdbx_database_PDB_obs_spr.pdb_id 4R5Q _pdbx_database_PDB_obs_spr.replace_pdb_id 4ONB _pdbx_database_PDB_obs_spr.details ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4IC1 . unspecified TargetTrack MCSG-APC108703 . unspecified # _pdbx_database_status.status_code OBS _pdbx_database_status.entry_id 4ONB _pdbx_database_status.recvd_initial_deposition_date 2014-01-28 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Nocek, B.' 1 'Skarina, T.' 2 'Lemak, S.' 3 'Brown, G.' 4 'Savchenko, A.' 5 'Joachimiak, A.' 6 'Yakunin, A.' 7 'Midwest Center for Structural Genomics (MCSG)' 8 # _citation.id primary _citation.title 'Crystal structure of CRISPR-associated exonuclease (Cas4 family) from Pyrobaculum calidifontis JCM 11548' _citation.journal_abbrev 'TO BE PUBLISHED' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Nocek, B.' 1 primary 'Skarina, T.' 2 primary 'Lemak, S.' 3 primary 'Brown, G.' 4 primary 'Savchenko, A.' 5 primary 'Joachimiak, A.' 6 primary 'Yakunin, A.' 7 # _cell.entry_id 4ONB _cell.length_a 117.836 _cell.length_b 117.836 _cell.length_c 89.412 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4ONB _symmetry.space_group_name_H-M 'I 4 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'CRISPR-associated exonuclease, Cas4 family' 25031.348 1 ? ? ? ? 2 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 3 non-polymer syn 'FE2/S2 (INORGANIC) CLUSTER' 175.820 1 ? ? ? ? 4 water nat water 18.015 23 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;FNGMELLSPKPLCSVVNCEDLEKLDHVSALNELRREQEIFKLLPGIYAHRYDFRRVSPSIINDFEYCPRLLWVQHKLGLK LLSEKSVVSIIRGRILHERYERLLSQYENVVAEYKVEIGDLVGVVDLVIKRGGEYIPVEIKTGFSKEAHKTQLQIYISML KARFGYLVYRNHVEVVHRNDAALDVLKKIREILSAREAPPAKCNSCIFKPICKNLL ; _entity_poly.pdbx_seq_one_letter_code_can ;FNGMELLSPKPLCSVVNCEDLEKLDHVSALNELRREQEIFKLLPGIYAHRYDFRRVSPSIINDFEYCPRLLWVQHKLGLK LLSEKSVVSIIRGRILHERYERLLSQYENVVAEYKVEIGDLVGVVDLVIKRGGEYIPVEIKTGFSKEAHKTQLQIYISML KARFGYLVYRNHVEVVHRNDAALDVLKKIREILSAREAPPAKCNSCIFKPICKNLL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier MCSG-APC108703 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PHE n 1 2 ASN n 1 3 GLY n 1 4 MET n 1 5 GLU n 1 6 LEU n 1 7 LEU n 1 8 SER n 1 9 PRO n 1 10 LYS n 1 11 PRO n 1 12 LEU n 1 13 CYS n 1 14 SER n 1 15 VAL n 1 16 VAL n 1 17 ASN n 1 18 CYS n 1 19 GLU n 1 20 ASP n 1 21 LEU n 1 22 GLU n 1 23 LYS n 1 24 LEU n 1 25 ASP n 1 26 HIS n 1 27 VAL n 1 28 SER n 1 29 ALA n 1 30 LEU n 1 31 ASN n 1 32 GLU n 1 33 LEU n 1 34 ARG n 1 35 ARG n 1 36 GLU n 1 37 GLN n 1 38 GLU n 1 39 ILE n 1 40 PHE n 1 41 LYS n 1 42 LEU n 1 43 LEU n 1 44 PRO n 1 45 GLY n 1 46 ILE n 1 47 TYR n 1 48 ALA n 1 49 HIS n 1 50 ARG n 1 51 TYR n 1 52 ASP n 1 53 PHE n 1 54 ARG n 1 55 ARG n 1 56 VAL n 1 57 SER n 1 58 PRO n 1 59 SER n 1 60 ILE n 1 61 ILE n 1 62 ASN n 1 63 ASP n 1 64 PHE n 1 65 GLU n 1 66 TYR n 1 67 CYS n 1 68 PRO n 1 69 ARG n 1 70 LEU n 1 71 LEU n 1 72 TRP n 1 73 VAL n 1 74 GLN n 1 75 HIS n 1 76 LYS n 1 77 LEU n 1 78 GLY n 1 79 LEU n 1 80 LYS n 1 81 LEU n 1 82 LEU n 1 83 SER n 1 84 GLU n 1 85 LYS n 1 86 SER n 1 87 VAL n 1 88 VAL n 1 89 SER n 1 90 ILE n 1 91 ILE n 1 92 ARG n 1 93 GLY n 1 94 ARG n 1 95 ILE n 1 96 LEU n 1 97 HIS n 1 98 GLU n 1 99 ARG n 1 100 TYR n 1 101 GLU n 1 102 ARG n 1 103 LEU n 1 104 LEU n 1 105 SER n 1 106 GLN n 1 107 TYR n 1 108 GLU n 1 109 ASN n 1 110 VAL n 1 111 VAL n 1 112 ALA n 1 113 GLU n 1 114 TYR n 1 115 LYS n 1 116 VAL n 1 117 GLU n 1 118 ILE n 1 119 GLY n 1 120 ASP n 1 121 LEU n 1 122 VAL n 1 123 GLY n 1 124 VAL n 1 125 VAL n 1 126 ASP n 1 127 LEU n 1 128 VAL n 1 129 ILE n 1 130 LYS n 1 131 ARG n 1 132 GLY n 1 133 GLY n 1 134 GLU n 1 135 TYR n 1 136 ILE n 1 137 PRO n 1 138 VAL n 1 139 GLU n 1 140 ILE n 1 141 LYS n 1 142 THR n 1 143 GLY n 1 144 PHE n 1 145 SER n 1 146 LYS n 1 147 GLU n 1 148 ALA n 1 149 HIS n 1 150 LYS n 1 151 THR n 1 152 GLN n 1 153 LEU n 1 154 GLN n 1 155 ILE n 1 156 TYR n 1 157 ILE n 1 158 SER n 1 159 MET n 1 160 LEU n 1 161 LYS n 1 162 ALA n 1 163 ARG n 1 164 PHE n 1 165 GLY n 1 166 TYR n 1 167 LEU n 1 168 VAL n 1 169 TYR n 1 170 ARG n 1 171 ASN n 1 172 HIS n 1 173 VAL n 1 174 GLU n 1 175 VAL n 1 176 VAL n 1 177 HIS n 1 178 ARG n 1 179 ASN n 1 180 ASP n 1 181 ALA n 1 182 ALA n 1 183 LEU n 1 184 ASP n 1 185 VAL n 1 186 LEU n 1 187 LYS n 1 188 LYS n 1 189 ILE n 1 190 ARG n 1 191 GLU n 1 192 ILE n 1 193 LEU n 1 194 SER n 1 195 ALA n 1 196 ARG n 1 197 GLU n 1 198 ALA n 1 199 PRO n 1 200 PRO n 1 201 ALA n 1 202 LYS n 1 203 CYS n 1 204 ASN n 1 205 SER n 1 206 CYS n 1 207 ILE n 1 208 PHE n 1 209 LYS n 1 210 PRO n 1 211 ILE n 1 212 CYS n 1 213 LYS n 1 214 ASN n 1 215 LEU n 1 216 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Pcal_0546 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'JCM 11548 / VA1' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pyrobaculum calidifontis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 410359 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A3MTK6_PYRCJ _struct_ref.pdbx_db_accession A3MTK6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MELLSPKPLCSVVNCEDLEKLDHVSALNELRREQEIFKLLPGIYAHRYDFRRVSPSIINDFEYCPRLLWVQHKLGLKLLS EKSVVSIIRGRILHERYERLLSQYENVVAEYKVEIGDLVGVVDLVIKRGGEYIPVEIKTGFSKEAHKTQLQIYISMLKAR FGYLVYRNHVEVVHRNDAALDVLKKIREILSAREAPPAKCNSCIFKPICKNLL ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4ONB _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 216 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A3MTK6 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 213 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 213 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4ONB PHE A 1 ? UNP A3MTK6 ? ? 'EXPRESSION TAG' -2 1 1 4ONB ASN A 2 ? UNP A3MTK6 ? ? 'EXPRESSION TAG' -1 2 1 4ONB GLY A 3 ? UNP A3MTK6 ? ? 'EXPRESSION TAG' 0 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FES non-polymer . 'FE2/S2 (INORGANIC) CLUSTER' ? 'Fe2 S2' 175.820 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4ONB _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.10 _exptl_crystal.density_percent_sol 60.32 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details 'NaFormate 3.5M , Bis-Tris Propane 0.1M pH 7 , VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.details mirrors _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2012-05-12 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9794 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9794 # _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.limit_k_max ? _reflns.d_resolution_high 2.651 _reflns.observed_criterion_F_min ? _reflns.pdbx_netI_over_sigmaI 41.5 _reflns.observed_criterion_F_max ? _reflns.pdbx_Rmerge_I_obs 0.049 _reflns.limit_l_max ? _reflns.limit_k_min ? _reflns.entry_id 4ONB _reflns.B_iso_Wilson_estimate 33 _reflns.percent_possible_obs 99.4 _reflns.pdbx_Rsym_value ? _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.limit_l_min ? _reflns.limit_h_min ? _reflns.R_free_details ? _reflns.number_all 9378 _reflns.d_resolution_low 37.263 _reflns.pdbx_redundancy 10.4 _reflns.number_obs 9378 _reflns.limit_h_max ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.65 _reflns_shell.d_res_low 2.70 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.ls_percent_reflns_R_free 4.76 _refine.overall_SU_B ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_R_Free_selection_details Random _refine.overall_FOM_free_R_set ? _refine.pdbx_data_cutoff_low_absF ? _refine.entry_id 4ONB _refine.aniso_B[2][3] ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_ML 0.33 _refine.aniso_B[1][3] ? _refine.pdbx_stereochemistry_target_values ML _refine.aniso_B[3][3] ? _refine.solvent_model_param_ksol ? _refine.ls_number_restraints ? _refine.aniso_B[1][1] ? _refine.pdbx_overall_ESU_R ? _refine.ls_R_factor_obs 0.2358 _refine.occupancy_min ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_starting_model ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_method_to_determine_struct SAD _refine.occupancy_max ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.correlation_coeff_Fo_to_Fc ? _refine.ls_number_reflns_R_free 651 _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_ls_sigma_F 0.0 _refine.ls_percent_reflns_obs 99.4 _refine.ls_R_factor_R_work 0.2330 _refine.overall_SU_R_free ? _refine.ls_d_res_high 2.651 _refine.pdbx_overall_ESU_R_Free ? _refine.B_iso_min ? _refine.pdbx_ls_cross_valid_method ? _refine.B_iso_mean ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.ls_R_factor_all 0.2370 _refine.aniso_B[2][2] ? _refine.B_iso_max ? _refine.pdbx_ls_sigma_I 0.0 _refine.ls_d_res_low 37.263 _refine.pdbx_overall_phase_error 26.29 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.aniso_B[1][2] ? _refine.ls_R_factor_R_free 0.2506 _refine.ls_R_factor_R_free_error ? _refine.ls_number_reflns_obs 9155 _refine.overall_FOM_work_R_set ? _refine.ls_number_parameters ? _refine.details ? _refine.ls_number_reflns_all 9806 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.solvent_model_param_bsol ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1709 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 23 _refine_hist.number_atoms_total 1737 _refine_hist.d_res_high 2.651 _refine_hist.d_res_low 37.263 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.006 ? ? 1771 ? 'X-RAY DIFFRACTION' f_angle_d 0.656 ? ? 2385 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 14.010 ? ? 666 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.028 ? ? 270 ? 'X-RAY DIFFRACTION' f_plane_restr 0.003 ? ? 306 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.6511 2.8557 1576 0.3695 57.00 0.3852 . . 83 . . . . 'X-RAY DIFFRACTION' . 2.8557 3.1429 2012 0.3140 61.00 0.3596 . . 120 . . . . 'X-RAY DIFFRACTION' . 3.1429 3.5974 2893 0.2519 88.00 0.3096 . . 138 . . . . 'X-RAY DIFFRACTION' . 3.5974 4.5311 3298 0.2089 99.00 0.2083 . . 156 . . . . 'X-RAY DIFFRACTION' . 4.5311 37.2667 3237 0.2055 97.00 0.1959 . . 154 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 4ONB _struct.title 'Crystal structure of CRISPR-associated exonuclease (Cas4 family) from Pyrobaculum calidifontis JCM 11548' _struct.pdbx_descriptor 'CRISPR-associated exonuclease, Cas4 family' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text ;Cas4, S2F2 cluster, MCSG, Structural Genomics, PSI-Biology, Midwest Center for Structural Genomics, CRISPR-associated exonuclease, HYDROLASE ; _struct_keywords.entry_id 4ONB # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 11 ? VAL A 15 ? PRO A 8 VAL A 12 5 ? 5 HELX_P HELX_P2 2 ASN A 17 ? GLU A 22 ? ASN A 14 GLU A 19 5 ? 6 HELX_P HELX_P3 3 HIS A 26 ? GLU A 38 ? HIS A 23 GLU A 35 1 ? 13 HELX_P HELX_P4 4 SER A 57 ? CYS A 67 ? SER A 54 CYS A 64 1 ? 11 HELX_P HELX_P5 5 CYS A 67 ? GLY A 78 ? CYS A 64 GLY A 75 1 ? 12 HELX_P HELX_P6 6 SER A 86 ? SER A 105 ? SER A 83 SER A 102 1 ? 20 HELX_P HELX_P7 7 SER A 145 ? LYS A 161 ? SER A 142 LYS A 158 1 ? 17 HELX_P HELX_P8 8 ASN A 179 ? ALA A 182 ? ASN A 176 ALA A 179 5 ? 4 HELX_P HELX_P9 9 LEU A 183 ? ALA A 195 ? LEU A 180 ALA A 192 1 ? 13 HELX_P HELX_P10 10 PRO A 210 ? LEU A 215 ? PRO A 207 LEU A 212 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 13 SG ? ? ? 1_555 A CYS 18 SG ? ? A CYS 10 A CYS 15 1_555 ? ? ? ? ? ? ? 2.033 ? metalc1 metalc ? ? A CYS 67 SG ? ? ? 1_555 C FES . FE1 ? ? A CYS 64 A FES 302 1_555 ? ? ? ? ? ? ? 2.278 ? metalc2 metalc ? ? A CYS 206 SG ? ? ? 1_555 C FES . FE2 ? ? A CYS 203 A FES 302 1_555 ? ? ? ? ? ? ? 2.287 ? metalc3 metalc ? ? A CYS 212 SG ? ? ? 1_555 C FES . FE2 ? ? A CYS 209 A FES 302 1_555 ? ? ? ? ? ? ? 2.293 ? metalc4 metalc ? ? A CYS 203 SG ? ? ? 1_555 C FES . FE1 ? ? A CYS 200 A FES 302 1_555 ? ? ? ? ? ? ? 2.305 ? metalc5 metalc ? ? B NA . NA ? ? ? 1_555 D HOH . O ? ? A NA 301 A HOH 406 1_555 ? ? ? ? ? ? ? 2.361 ? metalc6 metalc ? ? A GLU 139 OE1 ? ? ? 1_555 B NA . NA ? ? A GLU 136 A NA 301 1_555 ? ? ? ? ? ? ? 2.396 ? metalc7 metalc ? ? A ASP 126 OD2 ? ? ? 1_555 B NA . NA ? ? A ASP 123 A NA 301 1_555 ? ? ? ? ? ? ? 2.403 ? metalc8 metalc ? ? A ILE 140 O ? ? ? 1_555 B NA . NA ? ? A ILE 137 A NA 301 1_555 ? ? ? ? ? ? ? 2.660 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LYS _struct_mon_prot_cis.label_seq_id 209 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LYS _struct_mon_prot_cis.auth_seq_id 206 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 210 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 207 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.27 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 40 ? LEU A 43 ? PHE A 37 LEU A 40 A 2 ILE A 46 ? ARG A 50 ? ILE A 43 ARG A 47 A 3 LEU A 79 ? SER A 83 ? LEU A 76 SER A 80 B 1 VAL A 110 ? ILE A 118 ? VAL A 107 ILE A 115 B 2 LEU A 121 ? ARG A 131 ? LEU A 118 ARG A 128 B 3 GLU A 134 ? ILE A 140 ? GLU A 131 ILE A 137 B 4 PHE A 164 ? VAL A 168 ? PHE A 161 VAL A 165 B 5 VAL A 173 ? HIS A 177 ? VAL A 170 HIS A 174 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 43 ? N LEU A 40 O ILE A 46 ? O ILE A 43 A 2 3 N HIS A 49 ? N HIS A 46 O LYS A 80 ? O LYS A 77 B 1 2 N VAL A 116 ? N VAL A 113 O GLY A 123 ? O GLY A 120 B 2 3 N ILE A 129 ? N ILE A 126 O ILE A 136 ? O ILE A 133 B 3 4 N GLU A 139 ? N GLU A 136 O TYR A 166 ? O TYR A 163 B 4 5 N LEU A 167 ? N LEU A 164 O GLU A 174 ? O GLU A 171 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE NA A 301' AC2 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE FES A 302' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ASP A 126 ? ASP A 123 . ? 1_555 ? 2 AC1 5 GLU A 139 ? GLU A 136 . ? 1_555 ? 3 AC1 5 ILE A 140 ? ILE A 137 . ? 1_555 ? 4 AC1 5 HIS A 149 ? HIS A 146 . ? 1_555 ? 5 AC1 5 HOH D . ? HOH A 406 . ? 1_555 ? 6 AC2 5 CYS A 67 ? CYS A 64 . ? 1_555 ? 7 AC2 5 ALA A 201 ? ALA A 198 . ? 1_555 ? 8 AC2 5 CYS A 203 ? CYS A 200 . ? 1_555 ? 9 AC2 5 CYS A 206 ? CYS A 203 . ? 1_555 ? 10 AC2 5 CYS A 212 ? CYS A 209 . ? 1_555 ? # _database_PDB_matrix.entry_id 4ONB _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4ONB _atom_sites.fract_transf_matrix[1][1] 0.008486 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008486 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011184 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C FE N NA O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PHE 1 -2 -2 PHE PHE A . n A 1 2 ASN 2 -1 -1 ASN ASN A . n A 1 3 GLY 3 0 0 GLY GLY A . n A 1 4 MET 4 1 1 MET MET A . n A 1 5 GLU 5 2 2 GLU GLU A . n A 1 6 LEU 6 3 3 LEU LEU A . n A 1 7 LEU 7 4 4 LEU LEU A . n A 1 8 SER 8 5 5 SER SER A . n A 1 9 PRO 9 6 6 PRO PRO A . n A 1 10 LYS 10 7 7 LYS LYS A . n A 1 11 PRO 11 8 8 PRO PRO A . n A 1 12 LEU 12 9 9 LEU LEU A . n A 1 13 CYS 13 10 10 CYS CYS A . n A 1 14 SER 14 11 11 SER SER A . n A 1 15 VAL 15 12 12 VAL VAL A . n A 1 16 VAL 16 13 13 VAL VAL A . n A 1 17 ASN 17 14 14 ASN ASN A . n A 1 18 CYS 18 15 15 CYS CYS A . n A 1 19 GLU 19 16 16 GLU GLU A . n A 1 20 ASP 20 17 17 ASP ASP A . n A 1 21 LEU 21 18 18 LEU LEU A . n A 1 22 GLU 22 19 19 GLU GLU A . n A 1 23 LYS 23 20 20 LYS LYS A . n A 1 24 LEU 24 21 21 LEU LEU A . n A 1 25 ASP 25 22 22 ASP ASP A . n A 1 26 HIS 26 23 23 HIS HIS A . n A 1 27 VAL 27 24 24 VAL VAL A . n A 1 28 SER 28 25 25 SER SER A . n A 1 29 ALA 29 26 26 ALA ALA A . n A 1 30 LEU 30 27 27 LEU LEU A . n A 1 31 ASN 31 28 28 ASN ASN A . n A 1 32 GLU 32 29 29 GLU GLU A . n A 1 33 LEU 33 30 30 LEU LEU A . n A 1 34 ARG 34 31 31 ARG ARG A . n A 1 35 ARG 35 32 32 ARG ARG A . n A 1 36 GLU 36 33 33 GLU GLU A . n A 1 37 GLN 37 34 34 GLN GLN A . n A 1 38 GLU 38 35 35 GLU GLU A . n A 1 39 ILE 39 36 36 ILE ILE A . n A 1 40 PHE 40 37 37 PHE PHE A . n A 1 41 LYS 41 38 38 LYS LYS A . n A 1 42 LEU 42 39 39 LEU LEU A . n A 1 43 LEU 43 40 40 LEU LEU A . n A 1 44 PRO 44 41 41 PRO PRO A . n A 1 45 GLY 45 42 42 GLY GLY A . n A 1 46 ILE 46 43 43 ILE ILE A . n A 1 47 TYR 47 44 44 TYR TYR A . n A 1 48 ALA 48 45 45 ALA ALA A . n A 1 49 HIS 49 46 46 HIS HIS A . n A 1 50 ARG 50 47 47 ARG ARG A . n A 1 51 TYR 51 48 48 TYR TYR A . n A 1 52 ASP 52 49 49 ASP ASP A . n A 1 53 PHE 53 50 50 PHE PHE A . n A 1 54 ARG 54 51 51 ARG ARG A . n A 1 55 ARG 55 52 52 ARG ARG A . n A 1 56 VAL 56 53 53 VAL VAL A . n A 1 57 SER 57 54 54 SER SER A . n A 1 58 PRO 58 55 55 PRO PRO A . n A 1 59 SER 59 56 56 SER SER A . n A 1 60 ILE 60 57 57 ILE ILE A . n A 1 61 ILE 61 58 58 ILE ILE A . n A 1 62 ASN 62 59 59 ASN ASN A . n A 1 63 ASP 63 60 60 ASP ASP A . n A 1 64 PHE 64 61 61 PHE PHE A . n A 1 65 GLU 65 62 62 GLU GLU A . n A 1 66 TYR 66 63 63 TYR TYR A . n A 1 67 CYS 67 64 64 CYS CYS A . n A 1 68 PRO 68 65 65 PRO PRO A . n A 1 69 ARG 69 66 66 ARG ARG A . n A 1 70 LEU 70 67 67 LEU LEU A . n A 1 71 LEU 71 68 68 LEU LEU A . n A 1 72 TRP 72 69 69 TRP TRP A . n A 1 73 VAL 73 70 70 VAL VAL A . n A 1 74 GLN 74 71 71 GLN GLN A . n A 1 75 HIS 75 72 72 HIS HIS A . n A 1 76 LYS 76 73 73 LYS LYS A . n A 1 77 LEU 77 74 74 LEU LEU A . n A 1 78 GLY 78 75 75 GLY GLY A . n A 1 79 LEU 79 76 76 LEU LEU A . n A 1 80 LYS 80 77 77 LYS LYS A . n A 1 81 LEU 81 78 78 LEU LEU A . n A 1 82 LEU 82 79 79 LEU LEU A . n A 1 83 SER 83 80 80 SER SER A . n A 1 84 GLU 84 81 81 GLU GLU A . n A 1 85 LYS 85 82 82 LYS LYS A . n A 1 86 SER 86 83 83 SER SER A . n A 1 87 VAL 87 84 84 VAL VAL A . n A 1 88 VAL 88 85 85 VAL VAL A . n A 1 89 SER 89 86 86 SER SER A . n A 1 90 ILE 90 87 87 ILE ILE A . n A 1 91 ILE 91 88 88 ILE ILE A . n A 1 92 ARG 92 89 89 ARG ARG A . n A 1 93 GLY 93 90 90 GLY GLY A . n A 1 94 ARG 94 91 91 ARG ARG A . n A 1 95 ILE 95 92 92 ILE ILE A . n A 1 96 LEU 96 93 93 LEU LEU A . n A 1 97 HIS 97 94 94 HIS HIS A . n A 1 98 GLU 98 95 95 GLU GLU A . n A 1 99 ARG 99 96 96 ARG ARG A . n A 1 100 TYR 100 97 97 TYR TYR A . n A 1 101 GLU 101 98 98 GLU GLU A . n A 1 102 ARG 102 99 99 ARG ARG A . n A 1 103 LEU 103 100 100 LEU LEU A . n A 1 104 LEU 104 101 101 LEU LEU A . n A 1 105 SER 105 102 102 SER SER A . n A 1 106 GLN 106 103 103 GLN GLN A . n A 1 107 TYR 107 104 104 TYR TYR A . n A 1 108 GLU 108 105 105 GLU GLU A . n A 1 109 ASN 109 106 106 ASN ASN A . n A 1 110 VAL 110 107 107 VAL VAL A . n A 1 111 VAL 111 108 108 VAL VAL A . n A 1 112 ALA 112 109 109 ALA ALA A . n A 1 113 GLU 113 110 110 GLU GLU A . n A 1 114 TYR 114 111 111 TYR TYR A . n A 1 115 LYS 115 112 112 LYS LYS A . n A 1 116 VAL 116 113 113 VAL VAL A . n A 1 117 GLU 117 114 114 GLU GLU A . n A 1 118 ILE 118 115 115 ILE ILE A . n A 1 119 GLY 119 116 116 GLY GLY A . n A 1 120 ASP 120 117 117 ASP ASP A . n A 1 121 LEU 121 118 118 LEU LEU A . n A 1 122 VAL 122 119 119 VAL VAL A . n A 1 123 GLY 123 120 120 GLY GLY A . n A 1 124 VAL 124 121 121 VAL VAL A . n A 1 125 VAL 125 122 122 VAL VAL A . n A 1 126 ASP 126 123 123 ASP ASP A . n A 1 127 LEU 127 124 124 LEU LEU A . n A 1 128 VAL 128 125 125 VAL VAL A . n A 1 129 ILE 129 126 126 ILE ILE A . n A 1 130 LYS 130 127 127 LYS LYS A . n A 1 131 ARG 131 128 128 ARG ARG A . n A 1 132 GLY 132 129 129 GLY GLY A . n A 1 133 GLY 133 130 130 GLY GLY A . n A 1 134 GLU 134 131 131 GLU GLU A . n A 1 135 TYR 135 132 132 TYR TYR A . n A 1 136 ILE 136 133 133 ILE ILE A . n A 1 137 PRO 137 134 134 PRO PRO A . n A 1 138 VAL 138 135 135 VAL VAL A . n A 1 139 GLU 139 136 136 GLU GLU A . n A 1 140 ILE 140 137 137 ILE ILE A . n A 1 141 LYS 141 138 138 LYS LYS A . n A 1 142 THR 142 139 139 THR THR A . n A 1 143 GLY 143 140 140 GLY GLY A . n A 1 144 PHE 144 141 141 PHE PHE A . n A 1 145 SER 145 142 142 SER SER A . n A 1 146 LYS 146 143 143 LYS LYS A . n A 1 147 GLU 147 144 144 GLU GLU A . n A 1 148 ALA 148 145 145 ALA ALA A . n A 1 149 HIS 149 146 146 HIS HIS A . n A 1 150 LYS 150 147 147 LYS LYS A . n A 1 151 THR 151 148 148 THR THR A . n A 1 152 GLN 152 149 149 GLN GLN A . n A 1 153 LEU 153 150 150 LEU LEU A . n A 1 154 GLN 154 151 151 GLN GLN A . n A 1 155 ILE 155 152 152 ILE ILE A . n A 1 156 TYR 156 153 153 TYR TYR A . n A 1 157 ILE 157 154 154 ILE ILE A . n A 1 158 SER 158 155 155 SER SER A . n A 1 159 MET 159 156 156 MET MET A . n A 1 160 LEU 160 157 157 LEU LEU A . n A 1 161 LYS 161 158 158 LYS LYS A . n A 1 162 ALA 162 159 159 ALA ALA A . n A 1 163 ARG 163 160 160 ARG ARG A . n A 1 164 PHE 164 161 161 PHE PHE A . n A 1 165 GLY 165 162 162 GLY GLY A . n A 1 166 TYR 166 163 163 TYR TYR A . n A 1 167 LEU 167 164 164 LEU LEU A . n A 1 168 VAL 168 165 165 VAL VAL A . n A 1 169 TYR 169 166 166 TYR TYR A . n A 1 170 ARG 170 167 167 ARG ARG A . n A 1 171 ASN 171 168 168 ASN ASN A . n A 1 172 HIS 172 169 169 HIS HIS A . n A 1 173 VAL 173 170 170 VAL VAL A . n A 1 174 GLU 174 171 171 GLU GLU A . n A 1 175 VAL 175 172 172 VAL VAL A . n A 1 176 VAL 176 173 173 VAL VAL A . n A 1 177 HIS 177 174 174 HIS HIS A . n A 1 178 ARG 178 175 175 ARG ARG A . n A 1 179 ASN 179 176 176 ASN ASN A . n A 1 180 ASP 180 177 177 ASP ASP A . n A 1 181 ALA 181 178 178 ALA ALA A . n A 1 182 ALA 182 179 179 ALA ALA A . n A 1 183 LEU 183 180 180 LEU LEU A . n A 1 184 ASP 184 181 181 ASP ASP A . n A 1 185 VAL 185 182 182 VAL VAL A . n A 1 186 LEU 186 183 183 LEU LEU A . n A 1 187 LYS 187 184 184 LYS LYS A . n A 1 188 LYS 188 185 185 LYS LYS A . n A 1 189 ILE 189 186 186 ILE ILE A . n A 1 190 ARG 190 187 187 ARG ARG A . n A 1 191 GLU 191 188 188 GLU GLU A . n A 1 192 ILE 192 189 189 ILE ILE A . n A 1 193 LEU 193 190 190 LEU LEU A . n A 1 194 SER 194 191 191 SER SER A . n A 1 195 ALA 195 192 192 ALA ALA A . n A 1 196 ARG 196 193 193 ARG ARG A . n A 1 197 GLU 197 194 194 GLU GLU A . n A 1 198 ALA 198 195 195 ALA ALA A . n A 1 199 PRO 199 196 196 PRO PRO A . n A 1 200 PRO 200 197 197 PRO PRO A . n A 1 201 ALA 201 198 198 ALA ALA A . n A 1 202 LYS 202 199 199 LYS LYS A . n A 1 203 CYS 203 200 200 CYS CYS A . n A 1 204 ASN 204 201 201 ASN ASN A . n A 1 205 SER 205 202 202 SER SER A . n A 1 206 CYS 206 203 203 CYS CYS A . n A 1 207 ILE 207 204 204 ILE ILE A . n A 1 208 PHE 208 205 205 PHE PHE A . n A 1 209 LYS 209 206 206 LYS LYS A . n A 1 210 PRO 210 207 207 PRO PRO A . n A 1 211 ILE 211 208 208 ILE ILE A . n A 1 212 CYS 212 209 209 CYS CYS A . n A 1 213 LYS 213 210 210 LYS LYS A . n A 1 214 ASN 214 211 211 ASN ASN A . n A 1 215 LEU 215 212 212 LEU LEU A . n A 1 216 LEU 216 213 ? ? ? A . n # _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG _pdbx_SG_project.id 1 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA 1 301 301 NA NA A . C 3 FES 1 302 497 FES FES A . D 4 HOH 1 401 1 HOH HOH A . D 4 HOH 2 402 2 HOH HOH A . D 4 HOH 3 403 3 HOH HOH A . D 4 HOH 4 404 5 HOH HOH A . D 4 HOH 5 405 6 HOH HOH A . D 4 HOH 6 406 7 HOH HOH A . D 4 HOH 7 407 8 HOH HOH A . D 4 HOH 8 408 9 HOH HOH A . D 4 HOH 9 409 10 HOH HOH A . D 4 HOH 10 410 11 HOH HOH A . D 4 HOH 11 411 12 HOH HOH A . D 4 HOH 12 412 13 HOH HOH A . D 4 HOH 13 413 14 HOH HOH A . D 4 HOH 14 414 15 HOH HOH A . D 4 HOH 15 415 16 HOH HOH A . D 4 HOH 16 416 17 HOH HOH A . D 4 HOH 17 417 18 HOH HOH A . D 4 HOH 18 418 19 HOH HOH A . D 4 HOH 19 419 20 HOH HOH A . D 4 HOH 20 420 21 HOH HOH A . D 4 HOH 21 421 22 HOH HOH A . D 4 HOH 22 422 23 HOH HOH A . D 4 HOH 23 423 24 HOH HOH A . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 software_defined_assembly PISA octameric 8 2 software_defined_assembly PISA dimeric 2 3 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2,3,4,5,6,7,8 A,B,C,D 2 1,9 A,B,C,D 3 1 A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 22830 ? 1 MORE -301 ? 1 'SSA (A^2)' 69670 ? 2 'ABSA (A^2)' 2200 ? 2 MORE -65 ? 2 'SSA (A^2)' 20920 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -x,-y,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_555 -y,x,z 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 4_555 y,-x,z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 5 'crystal symmetry operation' 5_555 -x,y,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 6 'crystal symmetry operation' 6_555 x,-y,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 7 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 8 'crystal symmetry operation' 8_555 -y,-x,-z 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 9 'crystal symmetry operation' 15_544 y+1/2,x-1/2,-z-1/2 0.0000000000 1.0000000000 0.0000000000 58.9180000000 1.0000000000 0.0000000000 0.0000000000 -58.9180000000 0.0000000000 0.0000000000 -1.0000000000 -44.7060000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 403 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 67 ? A CYS 64 ? 1_555 FE1 ? C FES . ? A FES 302 ? 1_555 S1 ? C FES . ? A FES 302 ? 1_555 104.6 ? 2 SG ? A CYS 67 ? A CYS 64 ? 1_555 FE1 ? C FES . ? A FES 302 ? 1_555 S2 ? C FES . ? A FES 302 ? 1_555 120.5 ? 3 S1 ? C FES . ? A FES 302 ? 1_555 FE1 ? C FES . ? A FES 302 ? 1_555 S2 ? C FES . ? A FES 302 ? 1_555 90.7 ? 4 SG ? A CYS 67 ? A CYS 64 ? 1_555 FE1 ? C FES . ? A FES 302 ? 1_555 SG ? A CYS 203 ? A CYS 200 ? 1_555 122.6 ? 5 S1 ? C FES . ? A FES 302 ? 1_555 FE1 ? C FES . ? A FES 302 ? 1_555 SG ? A CYS 203 ? A CYS 200 ? 1_555 110.4 ? 6 S2 ? C FES . ? A FES 302 ? 1_555 FE1 ? C FES . ? A FES 302 ? 1_555 SG ? A CYS 203 ? A CYS 200 ? 1_555 103.4 ? 7 SG ? A CYS 206 ? A CYS 203 ? 1_555 FE2 ? C FES . ? A FES 302 ? 1_555 S1 ? C FES . ? A FES 302 ? 1_555 126.1 ? 8 SG ? A CYS 206 ? A CYS 203 ? 1_555 FE2 ? C FES . ? A FES 302 ? 1_555 S2 ? C FES . ? A FES 302 ? 1_555 116.3 ? 9 S1 ? C FES . ? A FES 302 ? 1_555 FE2 ? C FES . ? A FES 302 ? 1_555 S2 ? C FES . ? A FES 302 ? 1_555 90.5 ? 10 SG ? A CYS 206 ? A CYS 203 ? 1_555 FE2 ? C FES . ? A FES 302 ? 1_555 SG ? A CYS 212 ? A CYS 209 ? 1_555 95.9 ? 11 S1 ? C FES . ? A FES 302 ? 1_555 FE2 ? C FES . ? A FES 302 ? 1_555 SG ? A CYS 212 ? A CYS 209 ? 1_555 107.2 ? 12 S2 ? C FES . ? A FES 302 ? 1_555 FE2 ? C FES . ? A FES 302 ? 1_555 SG ? A CYS 212 ? A CYS 209 ? 1_555 123.4 ? 13 O ? D HOH . ? A HOH 406 ? 1_555 NA ? B NA . ? A NA 301 ? 1_555 OE1 ? A GLU 139 ? A GLU 136 ? 1_555 170.4 ? 14 O ? D HOH . ? A HOH 406 ? 1_555 NA ? B NA . ? A NA 301 ? 1_555 OD2 ? A ASP 126 ? A ASP 123 ? 1_555 98.4 ? 15 OE1 ? A GLU 139 ? A GLU 136 ? 1_555 NA ? B NA . ? A NA 301 ? 1_555 OD2 ? A ASP 126 ? A ASP 123 ? 1_555 91.0 ? 16 O ? D HOH . ? A HOH 406 ? 1_555 NA ? B NA . ? A NA 301 ? 1_555 O ? A ILE 140 ? A ILE 137 ? 1_555 70.7 ? 17 OE1 ? A GLU 139 ? A GLU 136 ? 1_555 NA ? B NA . ? A NA 301 ? 1_555 O ? A ILE 140 ? A ILE 137 ? 1_555 106.6 ? 18 OD2 ? A ASP 126 ? A ASP 123 ? 1_555 NA ? B NA . ? A NA 301 ? 1_555 O ? A ILE 140 ? A ILE 137 ? 1_555 96.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-04-30 2 'Structure model' 1 1 2014-09-17 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -1.7715 -20.7172 -4.6893 0.6382 0.4449 0.4560 0.2234 0.2695 0.0375 5.6917 3.5471 3.1998 0.2358 0.7227 0.6304 0.0604 0.0467 0.1579 0.0375 0.0672 -0.0846 -0.6971 -0.2623 -0.1336 'X-RAY DIFFRACTION' 2 ? refined 20.9571 -28.3953 -10.0345 0.3080 0.4605 0.4930 -0.0838 0.1476 -0.1452 4.9628 4.0380 9.2713 -3.7078 -0.9659 3.8063 0.3273 -0.2876 0.4681 -0.0398 -0.1675 -0.4299 -0.5029 0.7733 -0.1443 'X-RAY DIFFRACTION' 3 ? refined 11.0306 -30.2621 -24.4670 0.2252 0.4172 0.4052 0.0928 0.2304 -0.0712 1.0935 0.3003 0.2852 -0.1379 0.4840 -0.0907 0.0768 0.1204 0.0423 -0.0592 -0.0317 0.0704 -0.1519 -0.2993 0.0355 'X-RAY DIFFRACTION' 4 ? refined 17.2459 -29.3846 -26.0323 0.2911 0.2452 0.2830 -0.0484 0.2430 -0.1458 2.6512 1.1867 2.4587 -1.0285 -1.8050 0.1334 0.1126 0.0058 0.1242 -0.0925 0.0296 -0.1206 -0.2606 -0.0335 -0.1398 'X-RAY DIFFRACTION' 5 ? refined 3.9246 -25.9489 -8.2169 0.2716 0.3362 0.2622 0.1120 0.1614 -0.0373 1.6828 1.1379 1.9519 -1.1923 0.0862 0.6299 0.0499 -0.2022 0.0183 0.0011 0.0718 -0.0298 -0.1760 -0.1011 -0.0632 'X-RAY DIFFRACTION' 6 ? refined -5.6629 -30.1926 -19.5741 0.3155 0.7790 0.3667 0.2692 0.0884 -0.0319 3.5617 1.4550 3.5025 0.3270 -1.3508 -0.8882 0.0847 0.6087 -0.3322 -0.2630 -0.0389 -0.0187 0.0231 -0.6279 0.0839 'X-RAY DIFFRACTION' 7 ? refined 4.8199 -25.3102 -28.7595 0.5532 0.6738 0.4761 0.1870 0.1483 0.0186 4.7721 0.9009 1.3658 -1.2102 -2.3712 0.9319 0.2966 1.2717 0.0519 -0.6565 -0.2151 -0.0548 -0.6670 -0.7959 -0.0888 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid -2 through 23 ) ; 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 24 through 42 ) ; 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 43 through 64 ) ; 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 65 through 83 ) ; 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 84 through 103 ) ; 'X-RAY DIFFRACTION' 6 6 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 104 through 157 ) ; 'X-RAY DIFFRACTION' 7 7 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 158 through 212 ) ; # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SBC-Collect 'data collection' . ? 1 HKL-3000 'model building' . ? 2 MLPHARE 'model building' . ? 3 DM 'model building' . ? 4 ARP/wARP 'model building' . ? 5 CCP4 'model building' . ? 6 CCP4/PHENIX refinement '(phenix.refine: dev_1549)' ? 7 HKL-3000 'data reduction' . ? 8 SCALEPACK 'data scaling' . ? 9 HKL-3000 phasing . ? 10 MLPHARE phasing . ? 11 DM phasing . ? 12 ARP/wARP phasing . ? 13 CCP4 phasing . ? 14 PHENIX refinement dev_1549 ? 15 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 89 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 B _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 89 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 B _pdbx_validate_rmsd_angle.auth_atom_id_3 NH1 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 89 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 B _pdbx_validate_rmsd_angle.angle_value 124.04 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation 3.74 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 20 ? ? -99.67 44.84 2 1 PRO A 41 ? ? -39.05 -26.05 3 1 CYS A 64 ? ? -164.97 100.74 4 1 ILE A 115 ? ? -106.72 50.10 5 1 LYS A 127 ? ? -109.10 77.77 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 20 ? CG ? A LYS 23 CG 2 1 Y 1 A LYS 20 ? CD ? A LYS 23 CD 3 1 Y 1 A LYS 20 ? CE ? A LYS 23 CE 4 1 Y 1 A LYS 20 ? NZ ? A LYS 23 NZ 5 1 Y 1 A LEU 21 ? CG ? A LEU 24 CG 6 1 Y 1 A LEU 21 ? CD1 ? A LEU 24 CD1 7 1 Y 1 A LEU 21 ? CD2 ? A LEU 24 CD2 8 1 Y 1 A HIS 23 ? CG ? A HIS 26 CG 9 1 Y 1 A HIS 23 ? ND1 ? A HIS 26 ND1 10 1 Y 1 A HIS 23 ? CD2 ? A HIS 26 CD2 11 1 Y 1 A HIS 23 ? CE1 ? A HIS 26 CE1 12 1 Y 1 A HIS 23 ? NE2 ? A HIS 26 NE2 13 1 Y 1 A ARG 66 ? CG ? A ARG 69 CG 14 1 Y 1 A ARG 66 ? CD ? A ARG 69 CD 15 1 Y 1 A ARG 66 ? NE ? A ARG 69 NE 16 1 Y 1 A ARG 66 ? CZ ? A ARG 69 CZ 17 1 Y 1 A ARG 66 ? NH1 ? A ARG 69 NH1 18 1 Y 1 A ARG 66 ? NH2 ? A ARG 69 NH2 19 1 Y 1 A LYS 112 ? CG ? A LYS 115 CG 20 1 Y 1 A LYS 112 ? CD ? A LYS 115 CD 21 1 Y 1 A LYS 112 ? CE ? A LYS 115 CE 22 1 Y 1 A LYS 112 ? NZ ? A LYS 115 NZ 23 1 Y 1 A LYS 158 ? CG ? A LYS 161 CG 24 1 Y 1 A LYS 158 ? CD ? A LYS 161 CD 25 1 Y 1 A LYS 158 ? CE ? A LYS 161 CE 26 1 Y 1 A LYS 158 ? NZ ? A LYS 161 NZ 27 1 Y 1 A LYS 184 ? CG ? A LYS 187 CG 28 1 Y 1 A LYS 184 ? CD ? A LYS 187 CD 29 1 Y 1 A LYS 184 ? CE ? A LYS 187 CE 30 1 Y 1 A LYS 184 ? NZ ? A LYS 187 NZ 31 1 Y 1 A ARG 187 ? NE ? A ARG 190 NE 32 1 Y 1 A ARG 187 ? CZ ? A ARG 190 CZ 33 1 Y 1 A ARG 187 ? NH1 ? A ARG 190 NH1 34 1 Y 1 A ARG 187 ? NH2 ? A ARG 190 NH2 35 1 Y 1 A GLU 194 ? CG ? A GLU 197 CG 36 1 Y 1 A GLU 194 ? CD ? A GLU 197 CD 37 1 Y 1 A GLU 194 ? OE1 ? A GLU 197 OE1 38 1 Y 1 A GLU 194 ? OE2 ? A GLU 197 OE2 39 1 Y 1 A LYS 210 ? CG ? A LYS 213 CG 40 1 Y 1 A LYS 210 ? CD ? A LYS 213 CD 41 1 Y 1 A LYS 210 ? CE ? A LYS 213 CE 42 1 Y 1 A LYS 210 ? NZ ? A LYS 213 NZ # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id LEU _pdbx_unobs_or_zero_occ_residues.auth_seq_id 213 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id LEU _pdbx_unobs_or_zero_occ_residues.label_seq_id 216 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SODIUM ION' NA 3 'FE2/S2 (INORGANIC) CLUSTER' FES 4 water HOH #