HEADER HYDROLASE 28-JAN-14 4ONB OBSLTE 17-SEP-14 4ONB 4R5Q TITLE CRYSTAL STRUCTURE OF CRISPR-ASSOCIATED EXONUCLEASE (CAS4 FAMILY) FROM TITLE 2 PYROBACULUM CALIDIFONTIS JCM 11548 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CRISPR-ASSOCIATED EXONUCLEASE, CAS4 FAMILY; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROBACULUM CALIDIFONTIS; SOURCE 3 ORGANISM_TAXID: 410359; SOURCE 4 STRAIN: JCM 11548 / VA1; SOURCE 5 GENE: PCAL_0546 KEYWDS CAS4, S2F2 CLUSTER, MCSG, STRUCTURAL GENOMICS, PSI-BIOLOGY, MIDWEST KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, CRISPR-ASSOCIATED EXONUCLEASE, KEYWDS 3 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR B.NOCEK,T.SKARINA,S.LEMAK,G.BROWN,A.SAVCHENKO,A.JOACHIMIAK,A.YAKUNIN, AUTHOR 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 2 17-SEP-14 4ONB 1 OBSLTE REVDAT 1 30-APR-14 4ONB 0 JRNL AUTH B.NOCEK,T.SKARINA,S.LEMAK,G.BROWN,A.SAVCHENKO,A.JOACHIMIAK, JRNL AUTH 2 A.YAKUNIN JRNL TITL CRYSTAL STRUCTURE OF CRISPR-ASSOCIATED EXONUCLEASE (CAS4 JRNL TITL 2 FAMILY) FROM PYROBACULUM CALIDIFONTIS JCM 11548 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1549) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 9155 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.760 REMARK 3 FREE R VALUE TEST SET COUNT : 651 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.2667 - 4.5311 0.97 3237 154 0.2055 0.1959 REMARK 3 2 4.5311 - 3.5974 0.99 3298 156 0.2089 0.2083 REMARK 3 3 3.5974 - 3.1429 0.88 2893 138 0.2519 0.3096 REMARK 3 4 3.1429 - 2.8557 0.61 2012 120 0.3140 0.3596 REMARK 3 5 2.8557 - 2.6511 0.57 1576 83 0.3695 0.3852 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1771 REMARK 3 ANGLE : 0.656 2385 REMARK 3 CHIRALITY : 0.028 270 REMARK 3 PLANARITY : 0.003 306 REMARK 3 DIHEDRAL : 14.010 666 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: chain 'A' and (resid -2 through 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.7715 -20.7172 -4.6893 REMARK 3 T TENSOR REMARK 3 T11: 0.6382 T22: 0.4449 REMARK 3 T33: 0.4560 T12: 0.2234 REMARK 3 T13: 0.2695 T23: 0.0375 REMARK 3 L TENSOR REMARK 3 L11: 5.6917 L22: 3.5471 REMARK 3 L33: 3.1998 L12: 0.2358 REMARK 3 L13: 0.7227 L23: 0.6304 REMARK 3 S TENSOR REMARK 3 S11: 0.0604 S12: 0.0467 S13: 0.1579 REMARK 3 S21: 0.0375 S22: 0.0672 S23: -0.0846 REMARK 3 S31: -0.6971 S32: -0.2623 S33: -0.1336 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: chain 'A' and (resid 24 through 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.9571 -28.3953 -10.0345 REMARK 3 T TENSOR REMARK 3 T11: 0.3080 T22: 0.4605 REMARK 3 T33: 0.4930 T12: -0.0838 REMARK 3 T13: 0.1476 T23: -0.1452 REMARK 3 L TENSOR REMARK 3 L11: 4.9628 L22: 4.0380 REMARK 3 L33: 9.2713 L12: -3.7078 REMARK 3 L13: -0.9659 L23: 3.8063 REMARK 3 S TENSOR REMARK 3 S11: 0.3273 S12: -0.2876 S13: 0.4681 REMARK 3 S21: -0.0398 S22: -0.1675 S23: -0.4299 REMARK 3 S31: -0.5029 S32: 0.7733 S33: -0.1443 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: chain 'A' and (resid 43 through 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.0306 -30.2621 -24.4670 REMARK 3 T TENSOR REMARK 3 T11: 0.2252 T22: 0.4172 REMARK 3 T33: 0.4052 T12: 0.0928 REMARK 3 T13: 0.2304 T23: -0.0712 REMARK 3 L TENSOR REMARK 3 L11: 1.0935 L22: 0.3003 REMARK 3 L33: 0.2852 L12: -0.1379 REMARK 3 L13: 0.4840 L23: -0.0907 REMARK 3 S TENSOR REMARK 3 S11: 0.0768 S12: 0.1204 S13: 0.0423 REMARK 3 S21: -0.0592 S22: -0.0317 S23: 0.0704 REMARK 3 S31: -0.1519 S32: -0.2993 S33: 0.0355 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: chain 'A' and (resid 65 through 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.2459 -29.3846 -26.0323 REMARK 3 T TENSOR REMARK 3 T11: 0.2911 T22: 0.2452 REMARK 3 T33: 0.2830 T12: -0.0484 REMARK 3 T13: 0.2430 T23: -0.1458 REMARK 3 L TENSOR REMARK 3 L11: 2.6512 L22: 1.1867 REMARK 3 L33: 2.4587 L12: -1.0285 REMARK 3 L13: -1.8050 L23: 0.1334 REMARK 3 S TENSOR REMARK 3 S11: 0.1126 S12: 0.0058 S13: 0.1242 REMARK 3 S21: -0.0925 S22: 0.0296 S23: -0.1206 REMARK 3 S31: -0.2606 S32: -0.0335 S33: -0.1398 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: chain 'A' and (resid 84 through 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.9246 -25.9489 -8.2169 REMARK 3 T TENSOR REMARK 3 T11: 0.2716 T22: 0.3362 REMARK 3 T33: 0.2622 T12: 0.1120 REMARK 3 T13: 0.1614 T23: -0.0373 REMARK 3 L TENSOR REMARK 3 L11: 1.6828 L22: 1.1379 REMARK 3 L33: 1.9519 L12: -1.1923 REMARK 3 L13: 0.0862 L23: 0.6299 REMARK 3 S TENSOR REMARK 3 S11: 0.0499 S12: -0.2022 S13: 0.0183 REMARK 3 S21: 0.0011 S22: 0.0718 S23: -0.0298 REMARK 3 S31: -0.1760 S32: -0.1011 S33: -0.0632 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: chain 'A' and (resid 104 through 157 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.6629 -30.1926 -19.5741 REMARK 3 T TENSOR REMARK 3 T11: 0.3155 T22: 0.7790 REMARK 3 T33: 0.3667 T12: 0.2692 REMARK 3 T13: 0.0884 T23: -0.0319 REMARK 3 L TENSOR REMARK 3 L11: 3.5617 L22: 1.4550 REMARK 3 L33: 3.5025 L12: 0.3270 REMARK 3 L13: -1.3508 L23: -0.8882 REMARK 3 S TENSOR REMARK 3 S11: 0.0847 S12: 0.6087 S13: -0.3322 REMARK 3 S21: -0.2630 S22: -0.0389 S23: -0.0187 REMARK 3 S31: 0.0231 S32: -0.6279 S33: 0.0839 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: chain 'A' and (resid 158 through 212 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.8199 -25.3102 -28.7595 REMARK 3 T TENSOR REMARK 3 T11: 0.5532 T22: 0.6738 REMARK 3 T33: 0.4761 T12: 0.1870 REMARK 3 T13: 0.1483 T23: 0.0186 REMARK 3 L TENSOR REMARK 3 L11: 4.7721 L22: 0.9009 REMARK 3 L33: 1.3658 L12: -1.2102 REMARK 3 L13: -2.3712 L23: 0.9319 REMARK 3 S TENSOR REMARK 3 S11: 0.2966 S12: 1.2717 S13: 0.0519 REMARK 3 S21: -0.6565 S22: -0.2151 S23: -0.0548 REMARK 3 S31: -0.6670 S32: -0.7959 S33: -0.0888 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ONB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JAN-14. REMARK 100 THE RCSB ID CODE IS RCSB084708. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9378 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.651 REMARK 200 RESOLUTION RANGE LOW (A) : 37.263 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 10.400 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 41.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL3000, MLPHARE,DM, ARP/WARP, CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NAFORMATE 3.5M , BIS-TRIS PROPANE 0.1M REMARK 280 PH 7 , VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 58.91800 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 58.91800 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 44.70600 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 58.91800 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 58.91800 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 44.70600 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 58.91800 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 58.91800 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 44.70600 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 58.91800 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 58.91800 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 44.70600 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 58.91800 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 58.91800 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 44.70600 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 58.91800 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 58.91800 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 44.70600 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 58.91800 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 58.91800 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 44.70600 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 58.91800 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 58.91800 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 44.70600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 22830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 69670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -301.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -65.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 58.91800 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 -58.91800 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -44.70600 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 403 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 213 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 20 CG CD CE NZ REMARK 470 LEU A 21 CG CD1 CD2 REMARK 470 HIS A 23 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 66 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 112 CG CD CE NZ REMARK 470 LYS A 158 CG CD CE NZ REMARK 470 LYS A 184 CG CD CE NZ REMARK 470 ARG A 187 NE CZ NH1 NH2 REMARK 470 GLU A 194 CG CD OE1 OE2 REMARK 470 LYS A 210 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 20 44.84 -99.67 REMARK 500 PRO A 41 -26.05 -39.05 REMARK 500 CYS A 64 100.74 -164.97 REMARK 500 ILE A 115 50.10 -106.72 REMARK 500 LYS A 127 77.77 -109.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 302 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 64 SG REMARK 620 2 FES A 302 S1 104.6 REMARK 620 3 FES A 302 S2 120.5 90.7 REMARK 620 4 CYS A 200 SG 122.6 110.4 103.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 302 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 203 SG REMARK 620 2 FES A 302 S1 126.1 REMARK 620 3 FES A 302 S2 116.3 90.5 REMARK 620 4 CYS A 209 SG 95.9 107.2 123.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 406 O REMARK 620 2 GLU A 136 OE1 170.4 REMARK 620 3 ASP A 123 OD2 98.4 91.0 REMARK 620 4 ILE A 137 O 70.7 106.6 96.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FES A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4IC1 RELATED DB: PDB REMARK 900 RELATED ID: MCSG-APC108703 RELATED DB: TARGETTRACK DBREF 4ONB A 1 213 UNP A3MTK6 A3MTK6_PYRCJ 1 213 SEQADV 4ONB PHE A -2 UNP A3MTK6 EXPRESSION TAG SEQADV 4ONB ASN A -1 UNP A3MTK6 EXPRESSION TAG SEQADV 4ONB GLY A 0 UNP A3MTK6 EXPRESSION TAG SEQRES 1 A 216 PHE ASN GLY MET GLU LEU LEU SER PRO LYS PRO LEU CYS SEQRES 2 A 216 SER VAL VAL ASN CYS GLU ASP LEU GLU LYS LEU ASP HIS SEQRES 3 A 216 VAL SER ALA LEU ASN GLU LEU ARG ARG GLU GLN GLU ILE SEQRES 4 A 216 PHE LYS LEU LEU PRO GLY ILE TYR ALA HIS ARG TYR ASP SEQRES 5 A 216 PHE ARG ARG VAL SER PRO SER ILE ILE ASN ASP PHE GLU SEQRES 6 A 216 TYR CYS PRO ARG LEU LEU TRP VAL GLN HIS LYS LEU GLY SEQRES 7 A 216 LEU LYS LEU LEU SER GLU LYS SER VAL VAL SER ILE ILE SEQRES 8 A 216 ARG GLY ARG ILE LEU HIS GLU ARG TYR GLU ARG LEU LEU SEQRES 9 A 216 SER GLN TYR GLU ASN VAL VAL ALA GLU TYR LYS VAL GLU SEQRES 10 A 216 ILE GLY ASP LEU VAL GLY VAL VAL ASP LEU VAL ILE LYS SEQRES 11 A 216 ARG GLY GLY GLU TYR ILE PRO VAL GLU ILE LYS THR GLY SEQRES 12 A 216 PHE SER LYS GLU ALA HIS LYS THR GLN LEU GLN ILE TYR SEQRES 13 A 216 ILE SER MET LEU LYS ALA ARG PHE GLY TYR LEU VAL TYR SEQRES 14 A 216 ARG ASN HIS VAL GLU VAL VAL HIS ARG ASN ASP ALA ALA SEQRES 15 A 216 LEU ASP VAL LEU LYS LYS ILE ARG GLU ILE LEU SER ALA SEQRES 16 A 216 ARG GLU ALA PRO PRO ALA LYS CYS ASN SER CYS ILE PHE SEQRES 17 A 216 LYS PRO ILE CYS LYS ASN LEU LEU HET NA A 301 1 HET FES A 302 4 HETNAM NA SODIUM ION HETNAM FES FE2/S2 (INORGANIC) CLUSTER FORMUL 2 NA NA 1+ FORMUL 3 FES FE2 S2 FORMUL 4 HOH *23(H2 O) HELIX 1 1 PRO A 8 VAL A 12 5 5 HELIX 2 2 ASN A 14 GLU A 19 5 6 HELIX 3 3 HIS A 23 GLU A 35 1 13 HELIX 4 4 SER A 54 CYS A 64 1 11 HELIX 5 5 CYS A 64 GLY A 75 1 12 HELIX 6 6 SER A 83 SER A 102 1 20 HELIX 7 7 SER A 142 LYS A 158 1 17 HELIX 8 8 ASN A 176 ALA A 179 5 4 HELIX 9 9 LEU A 180 ALA A 192 1 13 HELIX 10 10 PRO A 207 LEU A 212 1 6 SHEET 1 A 3 PHE A 37 LEU A 40 0 SHEET 2 A 3 ILE A 43 ARG A 47 -1 O ILE A 43 N LEU A 40 SHEET 3 A 3 LEU A 76 SER A 80 -1 O LYS A 77 N HIS A 46 SHEET 1 B 5 VAL A 107 ILE A 115 0 SHEET 2 B 5 LEU A 118 ARG A 128 -1 O GLY A 120 N VAL A 113 SHEET 3 B 5 GLU A 131 ILE A 137 -1 O ILE A 133 N ILE A 126 SHEET 4 B 5 PHE A 161 VAL A 165 1 O TYR A 163 N GLU A 136 SHEET 5 B 5 VAL A 170 HIS A 174 -1 O GLU A 171 N LEU A 164 SSBOND 1 CYS A 10 CYS A 15 1555 1555 2.03 LINK SG CYS A 64 FE1 FES A 302 1555 1555 2.28 LINK SG CYS A 203 FE2 FES A 302 1555 1555 2.29 LINK SG CYS A 209 FE2 FES A 302 1555 1555 2.29 LINK SG CYS A 200 FE1 FES A 302 1555 1555 2.31 LINK NA NA A 301 O HOH A 406 1555 1555 2.36 LINK OE1 GLU A 136 NA NA A 301 1555 1555 2.40 LINK OD2 ASP A 123 NA NA A 301 1555 1555 2.40 LINK O ILE A 137 NA NA A 301 1555 1555 2.66 CISPEP 1 LYS A 206 PRO A 207 0 -0.27 SITE 1 AC1 5 ASP A 123 GLU A 136 ILE A 137 HIS A 146 SITE 2 AC1 5 HOH A 406 SITE 1 AC2 5 CYS A 64 ALA A 198 CYS A 200 CYS A 203 SITE 2 AC2 5 CYS A 209 CRYST1 117.836 117.836 89.412 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008486 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008486 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011184 0.00000