HEADER TRANSFERASE 28-JAN-14 4ONC TITLE CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS DECAPRENYL DIPHOSPHATE TITLE 2 SYNTHASE IN COMPLEX WITH BPH-640 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DECAPRENYL DIPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 13-296; COMPND 5 SYNONYM: DECAPP, DECAPRENYL PYROPHOSPHATE SYNTHASE, LONG-CHAIN COMPND 6 ISOPRENYL DIPHOSPHATE SYNTHASE, TRANS,POLYCIS-DECAPRENYL DIPHOSPHATE COMPND 7 SYNTHASE; COMPND 8 EC: 2.5.1.86, 2.5.1.87; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: RV2361C; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS POLYPRENYL TRANSFERASE, DECAPRENYL DIPHOSPHATE SYNTHASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR X.FENG,H.C.CHAN,T.P.KO REVDAT 2 08-NOV-23 4ONC 1 REMARK REVDAT 1 02-APR-14 4ONC 0 JRNL AUTH H.C.CHAN,X.FENG,T.P.KO,C.H.HUANG,Y.HU,Y.ZHENG,S.BOGUE, JRNL AUTH 2 C.NAKANO,T.HOSHINO,L.ZHANG,P.LV,W.LIU,D.C.CRICK,P.H.LIANG, JRNL AUTH 3 A.H.WANG,E.OLDFIELD,R.T.GUO JRNL TITL STRUCTURE AND INHIBITION OF TUBERCULOSINOL SYNTHASE AND JRNL TITL 2 DECAPRENYL DIPHOSPHATE SYNTHASE FROM MYCOBACTERIUM JRNL TITL 3 TUBERCULOSIS JRNL REF J.AM.CHEM.SOC. V. 136 2892 2014 JRNL REFN ISSN 0002-7863 JRNL PMID 24475925 JRNL DOI 10.1021/JA413127V REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 55357 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2945 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.83 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.88 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3783 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.08 REMARK 3 BIN R VALUE (WORKING SET) : 0.2270 REMARK 3 BIN FREE R VALUE SET COUNT : 200 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4510 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 437 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.74000 REMARK 3 B22 (A**2) : -0.96000 REMARK 3 B33 (A**2) : 1.70000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.110 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.111 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.072 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.360 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4674 ; 0.025 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6366 ; 2.314 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 555 ; 6.019 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 231 ;34.934 ;21.818 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 750 ;15.030 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 64 ;18.779 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 672 ; 0.186 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3659 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4ONC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000084709. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58370 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: 2VG4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, 10% GLYCEROL, 25% PEG 400, REMARK 280 7% PEG 3000, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.90450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.94000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.58350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.94000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.90450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.58350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 43 REMARK 465 TYR A 44 REMARK 465 GLY A 45 REMARK 465 PHE A 293 REMARK 465 GLY A 294 REMARK 465 SER A 295 REMARK 465 ALA A 296 REMARK 465 TYR B 44 REMARK 465 GLY B 45 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 763 O HOH B 764 1.63 REMARK 500 O HOH B 765 O HOH B 766 1.68 REMARK 500 N PHE A 13 O HOH A 753 1.78 REMARK 500 CB SER B 288 O HOH B 677 1.92 REMARK 500 O HOH B 766 O HOH B 767 1.95 REMARK 500 O HOH B 762 O HOH B 763 2.05 REMARK 500 OE2 GLU A 263 NH2 ARG B 250 2.08 REMARK 500 O HOH A 775 O HOH A 799 2.11 REMARK 500 OD1 ASP A 148 O HOH A 791 2.12 REMARK 500 O HOH B 679 O HOH B 739 2.14 REMARK 500 N PHE B 13 O HOH B 742 2.17 REMARK 500 O HOH A 782 O HOH A 816 2.19 REMARK 500 O HOH B 727 O HOH B 742 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 114 CE2 TRP A 114 CD2 0.081 REMARK 500 GLU A 203 CG GLU A 203 CD 0.096 REMARK 500 TRP A 257 CE2 TRP A 257 CD2 0.073 REMARK 500 HIS B 70 CG HIS B 70 CD2 0.102 REMARK 500 GLU B 200 CD GLU B 200 OE2 -0.069 REMARK 500 TRP B 257 CE2 TRP B 257 CD2 0.073 REMARK 500 TRP B 271 CE2 TRP B 271 CD2 0.085 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 127 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 144 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 163 CG - CD - NE ANGL. DEV. = -14.2 DEGREES REMARK 500 GLU A 224 OE1 - CD - OE2 ANGL. DEV. = 7.3 DEGREES REMARK 500 ARG A 244 NE - CZ - NH1 ANGL. DEV. = -4.0 DEGREES REMARK 500 MET A 255 CG - SD - CE ANGL. DEV. = -17.2 DEGREES REMARK 500 PRO B 43 C - N - CA ANGL. DEV. = 19.5 DEGREES REMARK 500 PRO B 43 C - N - CD ANGL. DEV. = -14.9 DEGREES REMARK 500 ARG B 147 NE - CZ - NH1 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG B 147 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 158 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 158 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG B 233 NE - CZ - NH1 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG B 291 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 165 -21.74 82.22 REMARK 500 ASP A 185 22.40 -145.28 REMARK 500 ALA B 42 -77.50 -84.72 REMARK 500 LYS B 56 18.28 56.62 REMARK 500 PHE B 120 119.46 -161.47 REMARK 500 ARG B 165 -30.31 88.63 REMARK 500 ASP B 185 15.01 -146.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 40B B 500 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 40B A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 40B B 500 DBREF 4ONC A 13 296 UNP P60479 DPDS_MYCTU 13 296 DBREF 4ONC B 13 296 UNP P60479 DPDS_MYCTU 13 296 SEQRES 1 A 284 PHE PRO GLN LEU PRO PRO ALA PRO ASP ASP TYR PRO THR SEQRES 2 A 284 PHE PRO ASP THR SER THR TRP PRO VAL VAL PHE PRO GLU SEQRES 3 A 284 LEU PRO ALA ALA PRO TYR GLY GLY PRO CYS ARG PRO PRO SEQRES 4 A 284 GLN HIS THR SER LYS ALA ALA ALA PRO ARG ILE PRO ALA SEQRES 5 A 284 ASP ARG LEU PRO ASN HIS VAL ALA ILE VAL MET ASP GLY SEQRES 6 A 284 ASN GLY ARG TRP ALA THR GLN ARG GLY LEU ALA ARG THR SEQRES 7 A 284 GLU GLY HIS LYS MET GLY GLU ALA VAL VAL ILE ASP ILE SEQRES 8 A 284 ALA CYS GLY ALA ILE GLU LEU GLY ILE LYS TRP LEU SER SEQRES 9 A 284 LEU TYR ALA PHE SER THR GLU ASN TRP LYS ARG SER PRO SEQRES 10 A 284 GLU GLU VAL ARG PHE LEU MET GLY PHE ASN ARG ASP VAL SEQRES 11 A 284 VAL ARG ARG ARG ARG ASP THR LEU LYS LYS LEU GLY VAL SEQRES 12 A 284 ARG ILE ARG TRP VAL GLY SER ARG PRO ARG LEU TRP ARG SEQRES 13 A 284 SER VAL ILE ASN GLU LEU ALA VAL ALA GLU GLU MET THR SEQRES 14 A 284 LYS SER ASN ASP VAL ILE THR ILE ASN TYR CYS VAL ASN SEQRES 15 A 284 TYR GLY GLY ARG THR GLU ILE THR GLU ALA THR ARG GLU SEQRES 16 A 284 ILE ALA ARG GLU VAL ALA ALA GLY ARG LEU ASN PRO GLU SEQRES 17 A 284 ARG ILE THR GLU SER THR ILE ALA ARG HIS LEU GLN ARG SEQRES 18 A 284 PRO ASP ILE PRO ASP VAL ASP LEU PHE LEU ARG THR SER SEQRES 19 A 284 GLY GLU GLN ARG SER SER ASN PHE MET LEU TRP GLN ALA SEQRES 20 A 284 ALA TYR ALA GLU TYR ILE PHE GLN ASP LYS LEU TRP PRO SEQRES 21 A 284 ASP TYR ASP ARG ARG ASP LEU TRP ALA ALA CYS GLU GLU SEQRES 22 A 284 TYR ALA SER ARG THR ARG ARG PHE GLY SER ALA SEQRES 1 B 284 PHE PRO GLN LEU PRO PRO ALA PRO ASP ASP TYR PRO THR SEQRES 2 B 284 PHE PRO ASP THR SER THR TRP PRO VAL VAL PHE PRO GLU SEQRES 3 B 284 LEU PRO ALA ALA PRO TYR GLY GLY PRO CYS ARG PRO PRO SEQRES 4 B 284 GLN HIS THR SER LYS ALA ALA ALA PRO ARG ILE PRO ALA SEQRES 5 B 284 ASP ARG LEU PRO ASN HIS VAL ALA ILE VAL MET ASP GLY SEQRES 6 B 284 ASN GLY ARG TRP ALA THR GLN ARG GLY LEU ALA ARG THR SEQRES 7 B 284 GLU GLY HIS LYS MET GLY GLU ALA VAL VAL ILE ASP ILE SEQRES 8 B 284 ALA CYS GLY ALA ILE GLU LEU GLY ILE LYS TRP LEU SER SEQRES 9 B 284 LEU TYR ALA PHE SER THR GLU ASN TRP LYS ARG SER PRO SEQRES 10 B 284 GLU GLU VAL ARG PHE LEU MET GLY PHE ASN ARG ASP VAL SEQRES 11 B 284 VAL ARG ARG ARG ARG ASP THR LEU LYS LYS LEU GLY VAL SEQRES 12 B 284 ARG ILE ARG TRP VAL GLY SER ARG PRO ARG LEU TRP ARG SEQRES 13 B 284 SER VAL ILE ASN GLU LEU ALA VAL ALA GLU GLU MET THR SEQRES 14 B 284 LYS SER ASN ASP VAL ILE THR ILE ASN TYR CYS VAL ASN SEQRES 15 B 284 TYR GLY GLY ARG THR GLU ILE THR GLU ALA THR ARG GLU SEQRES 16 B 284 ILE ALA ARG GLU VAL ALA ALA GLY ARG LEU ASN PRO GLU SEQRES 17 B 284 ARG ILE THR GLU SER THR ILE ALA ARG HIS LEU GLN ARG SEQRES 18 B 284 PRO ASP ILE PRO ASP VAL ASP LEU PHE LEU ARG THR SER SEQRES 19 B 284 GLY GLU GLN ARG SER SER ASN PHE MET LEU TRP GLN ALA SEQRES 20 B 284 ALA TYR ALA GLU TYR ILE PHE GLN ASP LYS LEU TRP PRO SEQRES 21 B 284 ASP TYR ASP ARG ARG ASP LEU TRP ALA ALA CYS GLU GLU SEQRES 22 B 284 TYR ALA SER ARG THR ARG ARG PHE GLY SER ALA HET 40B A 500 28 HET 40B B 500 16 HETNAM 40B [HYDROXY(1,1':3',1''-TERPHENYL-3-YL) HETNAM 2 40B METHANEDIYL]BIS(PHOSPHONIC ACID) FORMUL 3 40B 2(C19 H18 O7 P2) FORMUL 5 HOH *437(H2 O) HELIX 1 1 PRO A 63 LEU A 67 5 5 HELIX 2 2 GLY A 77 ARG A 85 1 9 HELIX 3 3 ALA A 88 GLY A 111 1 24 HELIX 4 4 GLU A 123 ARG A 127 5 5 HELIX 5 5 SER A 128 GLY A 154 1 27 HELIX 6 6 TRP A 167 LYS A 182 1 16 HELIX 7 7 GLY A 196 ALA A 214 1 19 HELIX 8 8 ASN A 218 ILE A 222 5 5 HELIX 9 9 THR A 223 LEU A 231 1 9 HELIX 10 10 LEU A 270 TYR A 274 5 5 HELIX 11 11 ASP A 275 THR A 290 1 16 HELIX 12 12 PRO B 63 LEU B 67 5 5 HELIX 13 13 GLY B 77 ARG B 85 1 9 HELIX 14 14 ALA B 88 GLY B 111 1 24 HELIX 15 15 GLU B 123 ARG B 127 5 5 HELIX 16 16 SER B 128 LEU B 153 1 26 HELIX 17 17 TRP B 167 LYS B 182 1 16 HELIX 18 18 GLY B 196 ALA B 214 1 19 HELIX 19 19 ASN B 218 ILE B 222 5 5 HELIX 20 20 THR B 223 LEU B 231 1 9 HELIX 21 21 LEU B 270 TYR B 274 5 5 HELIX 22 22 ASP B 275 ARG B 289 1 15 SHEET 1 A 2 THR A 25 PHE A 26 0 SHEET 2 A 2 GLN A 52 HIS A 53 1 O GLN A 52 N PHE A 26 SHEET 1 B 6 VAL A 155 VAL A 160 0 SHEET 2 B 6 ILE A 187 TYR A 195 1 O ILE A 189 N ARG A 156 SHEET 3 B 6 TRP A 114 SER A 121 1 N LEU A 115 O THR A 188 SHEET 4 B 6 HIS A 70 VAL A 74 1 N VAL A 71 O SER A 116 SHEET 5 B 6 LEU A 241 ARG A 244 1 O LEU A 243 N ALA A 72 SHEET 6 B 6 GLU A 263 PHE A 266 1 O GLU A 263 N PHE A 242 SHEET 1 C 2 THR B 25 PHE B 26 0 SHEET 2 C 2 GLN B 52 HIS B 53 1 O GLN B 52 N PHE B 26 SHEET 1 D 6 VAL B 155 VAL B 160 0 SHEET 2 D 6 ILE B 187 TYR B 195 1 O TYR B 191 N ARG B 158 SHEET 3 D 6 TRP B 114 SER B 121 1 N LEU B 117 O ASN B 190 SHEET 4 D 6 HIS B 70 VAL B 74 1 N ILE B 73 O SER B 116 SHEET 5 D 6 LEU B 241 ARG B 244 1 O LEU B 243 N ALA B 72 SHEET 6 D 6 GLU B 263 PHE B 266 1 O GLU B 263 N PHE B 242 CISPEP 1 PHE A 26 PRO A 27 0 -0.33 CISPEP 2 TRP A 32 PRO A 33 0 -2.44 CISPEP 3 PHE B 26 PRO B 27 0 3.09 CISPEP 4 TRP B 32 PRO B 33 0 -1.72 CISPEP 5 ALA B 42 PRO B 43 0 14.92 SITE 1 AC1 14 GLY A 77 GLY A 79 ARG A 80 THR A 83 SITE 2 AC1 14 ARG A 89 ARG A 127 HOH A 679 HOH A 809 SITE 3 AC1 14 ARG B 144 ASN B 172 GLU B 173 VAL B 176 SITE 4 AC1 14 ARG B 292 PHE B 293 SITE 1 AC2 11 GLY B 77 ASN B 78 GLY B 79 ARG B 80 SITE 2 AC2 11 ARG B 89 ASN B 124 ARG B 127 HOH B 722 SITE 3 AC2 11 HOH B 781 HOH B 804 HOH B 810 CRYST1 77.809 89.167 93.880 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012852 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011215 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010652 0.00000