HEADER TRANSCRIPTION/DNA 28-JAN-14 4OND TITLE ANCESTRAL STEROID RECEPTOR 2 DBD HELIX MUTANT - ERE DNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANCESTRAL SR2 HELIX MUTANT; COMPND 3 CHAIN: A, B, E, F; COMPND 4 FRAGMENT: DNA BINDING DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: PHYLOGENETICALLY RECONSTRUCTED; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 5'-D(*CP*CP*AP*GP*GP*TP*CP*AP*GP*AP*GP*TP*GP*AP*CP*CP*TP*G) COMPND 9 -3'; COMPND 10 CHAIN: I, K; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: ESTROGEN RESPONSE ELEMENT; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: 5'-D(*TP*CP*AP*GP*GP*TP*CP*AP*CP*TP*CP*TP*GP*AP*CP*CP*TP*G) COMPND 15 -3'; COMPND 16 CHAIN: J, L; COMPND 17 ENGINEERED: YES; COMPND 18 OTHER_DETAILS: ESTROGEN RESPONSE ELEMENT SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 MOL_ID: 3; SOURCE 9 SYNTHETIC: YES KEYWDS NUCLEAR RECEPTOR DNA BINDING DOMAIN, ZINC FINGER, TRANSCRIPTION KEYWDS 2 FACTOR, COREGULATORS, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.O.ORTLUND,M.N.MURPHY REVDAT 3 28-FEB-24 4OND 1 REMARK LINK REVDAT 2 22-NOV-17 4OND 1 REMARK REVDAT 1 29-OCT-14 4OND 0 JRNL AUTH A.N.MCKEOWN,J.T.BRIDGHAM,D.W.ANDERSON,M.N.MURPHY, JRNL AUTH 2 E.A.ORTLUND,J.W.THORNTON JRNL TITL EVOLUTION OF DNA SPECIFICITY IN A TRANSCRIPTION FACTOR JRNL TITL 2 FAMILY PRODUCED A NEW GENE REGULATORY MODULE. JRNL REF CELL(CAMBRIDGE,MASS.) V. 159 58 2014 JRNL REFN ISSN 0092-8674 JRNL PMID 25259920 JRNL DOI 10.1016/J.CELL.2014.09.003 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1593 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 41370 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.810 REMARK 3 FREE R VALUE TEST SET COUNT : 1990 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.5685 - 5.4239 0.97 2822 143 0.1632 0.1606 REMARK 3 2 5.4239 - 4.3072 1.00 2867 145 0.1500 0.1718 REMARK 3 3 4.3072 - 3.7633 1.00 2844 145 0.1516 0.1904 REMARK 3 4 3.7633 - 3.4194 0.99 2828 143 0.1744 0.2103 REMARK 3 5 3.4194 - 3.1745 0.98 2790 138 0.1877 0.2227 REMARK 3 6 3.1745 - 2.9874 1.00 2813 141 0.2182 0.2489 REMARK 3 7 2.9874 - 2.8379 1.00 2820 143 0.2258 0.2966 REMARK 3 8 2.8379 - 2.7144 1.00 2843 145 0.2319 0.2767 REMARK 3 9 2.7144 - 2.6099 1.00 2847 143 0.2334 0.2963 REMARK 3 10 2.6099 - 2.5199 1.00 2788 141 0.2395 0.2779 REMARK 3 11 2.5199 - 2.4411 1.00 2832 144 0.2315 0.2652 REMARK 3 12 2.4411 - 2.3713 1.00 2837 144 0.2388 0.2923 REMARK 3 13 2.3713 - 2.3089 1.00 2813 143 0.2494 0.2665 REMARK 3 14 2.3089 - 2.2530 0.92 2636 132 0.2974 0.3560 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.690 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.81 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3830 REMARK 3 ANGLE : 0.668 5437 REMARK 3 CHIRALITY : 0.029 600 REMARK 3 PLANARITY : 0.003 454 REMARK 3 DIHEDRAL : 22.498 1549 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -9.8020 11.8770 -29.3716 REMARK 3 T TENSOR REMARK 3 T11: 0.3283 T22: 0.3381 REMARK 3 T33: 0.3029 T12: -0.0618 REMARK 3 T13: 0.0093 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 1.0412 L22: 0.4166 REMARK 3 L33: 1.6048 L12: -0.2238 REMARK 3 L13: 0.5469 L23: -0.2817 REMARK 3 S TENSOR REMARK 3 S11: 0.0210 S12: -0.0809 S13: 0.0301 REMARK 3 S21: 0.0542 S22: -0.0043 S23: -0.0654 REMARK 3 S31: -0.0330 S32: 0.0343 S33: -0.0177 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4OND COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000084710. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK DOUBLE-CRYSTAL REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41533 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.78600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 50 MM AMMONIUM ACETATE, REMARK 280 100 MM BIS-TRIS, PH 5.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.91450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, K, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 PRO A 2 REMARK 465 PRO A 3 REMARK 465 ALA A 76 REMARK 465 ARG A 77 REMARK 465 LYS A 78 REMARK 465 SER A 79 REMARK 465 LYS A 80 REMARK 465 LYS A 81 REMARK 465 LEU A 82 REMARK 465 SER B 1 REMARK 465 PRO B 2 REMARK 465 PRO B 3 REMARK 465 GLN B 4 REMARK 465 ALA B 76 REMARK 465 ARG B 77 REMARK 465 LYS B 78 REMARK 465 SER B 79 REMARK 465 LYS B 80 REMARK 465 LYS B 81 REMARK 465 LEU B 82 REMARK 465 SER E 1 REMARK 465 PRO E 2 REMARK 465 PRO E 3 REMARK 465 GLY E 75 REMARK 465 ALA E 76 REMARK 465 ARG E 77 REMARK 465 LYS E 78 REMARK 465 SER E 79 REMARK 465 LYS E 80 REMARK 465 LYS E 81 REMARK 465 LEU E 82 REMARK 465 SER F 1 REMARK 465 PRO F 2 REMARK 465 PRO F 3 REMARK 465 GLY F 75 REMARK 465 ALA F 76 REMARK 465 ARG F 77 REMARK 465 LYS F 78 REMARK 465 SER F 79 REMARK 465 LYS F 80 REMARK 465 LYS F 81 REMARK 465 LEU F 82 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DT I 6 C7 REMARK 470 DT J 6 C7 REMARK 470 DT K 6 C7 REMARK 470 DT L 6 C7 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP2 DA J 3 O HOH J 103 2.19 REMARK 500 O GLY B 37 O HOH B 223 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 48 45.64 -149.36 REMARK 500 ASN B 40 57.42 -100.01 REMARK 500 ASP B 48 39.88 -141.34 REMARK 500 ARG E 46 38.90 -143.31 REMARK 500 ASP E 48 40.51 -147.33 REMARK 500 HIS F 39 -59.80 -125.81 REMARK 500 ASN F 40 67.81 63.48 REMARK 500 ASP F 48 39.08 -146.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 7 SG REMARK 620 2 CYS A 10 SG 111.0 REMARK 620 3 CYS A 24 SG 116.2 103.4 REMARK 620 4 CYS A 27 SG 110.9 112.1 102.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 43 SG REMARK 620 2 CYS A 49 SG 104.8 REMARK 620 3 CYS A 59 SG 116.6 114.5 REMARK 620 4 CYS A 62 SG 108.5 108.2 104.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 7 SG REMARK 620 2 CYS B 10 SG 112.6 REMARK 620 3 CYS B 24 SG 113.5 106.5 REMARK 620 4 CYS B 27 SG 110.7 110.7 102.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 43 SG REMARK 620 2 CYS B 49 SG 102.1 REMARK 620 3 CYS B 59 SG 111.9 117.9 REMARK 620 4 CYS B 62 SG 107.9 110.7 106.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E 102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS E 7 SG REMARK 620 2 CYS E 10 SG 115.6 REMARK 620 3 CYS E 24 SG 111.7 107.1 REMARK 620 4 CYS E 27 SG 108.7 113.2 99.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS E 43 SG REMARK 620 2 CYS E 49 SG 101.9 REMARK 620 3 CYS E 59 SG 113.9 117.4 REMARK 620 4 CYS E 62 SG 109.8 112.4 101.7 REMARK 620 5 HOH E 208 O 72.7 69.9 74.0 175.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN F 102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS F 7 SG REMARK 620 2 CYS F 10 SG 112.7 REMARK 620 3 CYS F 24 SG 112.9 107.5 REMARK 620 4 CYS F 27 SG 109.0 112.2 102.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN F 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS F 43 SG REMARK 620 2 CYS F 49 SG 104.5 REMARK 620 3 CYS F 59 SG 113.1 112.0 REMARK 620 4 CYS F 62 SG 107.2 113.2 106.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN E 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN E 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN F 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN F 102 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4OLN RELATED DB: PDB REMARK 900 ANCESTRAL SR1-ERE DNA COMPLEX REMARK 900 RELATED ID: 4OOR RELATED DB: PDB DBREF 4OND A 1 82 PDB 4OND 4OND 1 82 DBREF 4OND B 1 82 PDB 4OND 4OND 1 82 DBREF 4OND E 1 82 PDB 4OND 4OND 1 82 DBREF 4OND F 1 82 PDB 4OND 4OND 1 82 DBREF 4OND I 1 18 PDB 4OND 4OND 1 18 DBREF 4OND K 1 18 PDB 4OND 4OND 1 18 DBREF 4OND J 1 18 PDB 4OND 4OND 1 18 DBREF 4OND L 1 18 PDB 4OND 4OND 1 18 SEQRES 1 A 82 SER PRO PRO GLN LYS VAL CYS LEU ILE CYS GLY ASP GLU SEQRES 2 A 82 ALA SER GLY CYS HIS TYR GLY VAL LEU THR CYS GLU GLY SEQRES 3 A 82 CYS LYS ALA PHE PHE LYS ARG ALA VAL GLU GLY GLN HIS SEQRES 4 A 82 ASN TYR LEU CYS ALA GLY ARG ASN ASP CYS ILE ILE ASP SEQRES 5 A 82 LYS ILE ARG ARG LYS ASN CYS PRO ALA CYS ARG LEU ARG SEQRES 6 A 82 LYS CYS LEU GLN ALA GLY MET THR LEU GLY ALA ARG LYS SEQRES 7 A 82 SER LYS LYS LEU SEQRES 1 B 82 SER PRO PRO GLN LYS VAL CYS LEU ILE CYS GLY ASP GLU SEQRES 2 B 82 ALA SER GLY CYS HIS TYR GLY VAL LEU THR CYS GLU GLY SEQRES 3 B 82 CYS LYS ALA PHE PHE LYS ARG ALA VAL GLU GLY GLN HIS SEQRES 4 B 82 ASN TYR LEU CYS ALA GLY ARG ASN ASP CYS ILE ILE ASP SEQRES 5 B 82 LYS ILE ARG ARG LYS ASN CYS PRO ALA CYS ARG LEU ARG SEQRES 6 B 82 LYS CYS LEU GLN ALA GLY MET THR LEU GLY ALA ARG LYS SEQRES 7 B 82 SER LYS LYS LEU SEQRES 1 E 82 SER PRO PRO GLN LYS VAL CYS LEU ILE CYS GLY ASP GLU SEQRES 2 E 82 ALA SER GLY CYS HIS TYR GLY VAL LEU THR CYS GLU GLY SEQRES 3 E 82 CYS LYS ALA PHE PHE LYS ARG ALA VAL GLU GLY GLN HIS SEQRES 4 E 82 ASN TYR LEU CYS ALA GLY ARG ASN ASP CYS ILE ILE ASP SEQRES 5 E 82 LYS ILE ARG ARG LYS ASN CYS PRO ALA CYS ARG LEU ARG SEQRES 6 E 82 LYS CYS LEU GLN ALA GLY MET THR LEU GLY ALA ARG LYS SEQRES 7 E 82 SER LYS LYS LEU SEQRES 1 F 82 SER PRO PRO GLN LYS VAL CYS LEU ILE CYS GLY ASP GLU SEQRES 2 F 82 ALA SER GLY CYS HIS TYR GLY VAL LEU THR CYS GLU GLY SEQRES 3 F 82 CYS LYS ALA PHE PHE LYS ARG ALA VAL GLU GLY GLN HIS SEQRES 4 F 82 ASN TYR LEU CYS ALA GLY ARG ASN ASP CYS ILE ILE ASP SEQRES 5 F 82 LYS ILE ARG ARG LYS ASN CYS PRO ALA CYS ARG LEU ARG SEQRES 6 F 82 LYS CYS LEU GLN ALA GLY MET THR LEU GLY ALA ARG LYS SEQRES 7 F 82 SER LYS LYS LEU SEQRES 1 I 18 DC DC DA DG DG DT DC DA DG DA DG DT DG SEQRES 2 I 18 DA DC DC DT DG SEQRES 1 J 18 DT DC DA DG DG DT DC DA DC DT DC DT DG SEQRES 2 J 18 DA DC DC DT DG SEQRES 1 K 18 DC DC DA DG DG DT DC DA DG DA DG DT DG SEQRES 2 K 18 DA DC DC DT DG SEQRES 1 L 18 DT DC DA DG DG DT DC DA DC DT DC DT DG SEQRES 2 L 18 DA DC DC DT DG HET ZN A 101 1 HET ZN A 102 1 HET ZN B 101 1 HET ZN B 102 1 HET ZN E 101 1 HET ZN E 102 1 HET ZN F 101 1 HET ZN F 102 1 HETNAM ZN ZINC ION FORMUL 9 ZN 8(ZN 2+) FORMUL 17 HOH *132(H2 O) HELIX 1 1 CYS A 24 GLY A 37 1 14 HELIX 2 2 CYS A 59 ALA A 70 1 12 HELIX 3 3 CYS B 24 GLY B 37 1 14 HELIX 4 4 CYS B 59 GLY B 71 1 13 HELIX 5 5 CYS E 24 GLY E 37 1 14 HELIX 6 6 CYS E 59 GLY E 71 1 13 HELIX 7 7 CYS F 24 GLY F 37 1 14 HELIX 8 8 CYS F 59 GLY F 71 1 13 SHEET 1 A 2 GLY A 16 HIS A 18 0 SHEET 2 A 2 VAL A 21 THR A 23 -1 O VAL A 21 N HIS A 18 SHEET 1 B 2 GLY B 16 HIS B 18 0 SHEET 2 B 2 VAL B 21 THR B 23 -1 O VAL B 21 N HIS B 18 SHEET 1 C 2 GLY E 16 HIS E 18 0 SHEET 2 C 2 VAL E 21 THR E 23 -1 O VAL E 21 N HIS E 18 SHEET 1 D 2 GLY F 16 HIS F 18 0 SHEET 2 D 2 VAL F 21 THR F 23 -1 O VAL F 21 N HIS F 18 LINK SG CYS A 7 ZN ZN A 102 1555 1555 2.32 LINK SG CYS A 10 ZN ZN A 102 1555 1555 2.20 LINK SG CYS A 24 ZN ZN A 102 1555 1555 2.31 LINK SG CYS A 27 ZN ZN A 102 1555 1555 2.35 LINK SG CYS A 43 ZN ZN A 101 1555 1555 2.32 LINK SG CYS A 49 ZN ZN A 101 1555 1555 2.45 LINK SG CYS A 59 ZN ZN A 101 1555 1555 2.30 LINK SG CYS A 62 ZN ZN A 101 1555 1555 2.38 LINK SG CYS B 7 ZN ZN B 101 1555 1555 2.35 LINK SG CYS B 10 ZN ZN B 101 1555 1555 2.22 LINK SG CYS B 24 ZN ZN B 101 1555 1555 2.30 LINK SG CYS B 27 ZN ZN B 101 1555 1555 2.34 LINK SG CYS B 43 ZN ZN B 102 1555 1555 2.41 LINK SG CYS B 49 ZN ZN B 102 1555 1555 2.42 LINK SG CYS B 59 ZN ZN B 102 1555 1555 2.24 LINK SG CYS B 62 ZN ZN B 102 1555 1555 2.38 LINK SG CYS E 7 ZN ZN E 102 1555 1555 2.38 LINK SG CYS E 10 ZN ZN E 102 1555 1555 2.15 LINK SG CYS E 24 ZN ZN E 102 1555 1555 2.35 LINK SG CYS E 27 ZN ZN E 102 1555 1555 2.46 LINK SG CYS E 43 ZN ZN E 101 1555 1555 2.34 LINK SG CYS E 49 ZN ZN E 101 1555 1555 2.38 LINK SG CYS E 59 ZN ZN E 101 1555 1555 2.32 LINK SG CYS E 62 ZN ZN E 101 1555 1555 2.35 LINK ZN ZN E 101 O HOH E 208 1555 1555 2.12 LINK SG CYS F 7 ZN ZN F 102 1555 1555 2.38 LINK SG CYS F 10 ZN ZN F 102 1555 1555 2.23 LINK SG CYS F 24 ZN ZN F 102 1555 1555 2.29 LINK SG CYS F 27 ZN ZN F 102 1555 1555 2.42 LINK SG CYS F 43 ZN ZN F 101 1555 1555 2.43 LINK SG CYS F 49 ZN ZN F 101 1555 1555 2.41 LINK SG CYS F 59 ZN ZN F 101 1555 1555 2.27 LINK SG CYS F 62 ZN ZN F 101 1555 1555 2.30 SITE 1 AC1 4 CYS A 43 CYS A 49 CYS A 59 CYS A 62 SITE 1 AC2 4 CYS A 7 CYS A 10 CYS A 24 CYS A 27 SITE 1 AC3 4 CYS B 7 CYS B 10 CYS B 24 CYS B 27 SITE 1 AC4 4 CYS B 43 CYS B 49 CYS B 59 CYS B 62 SITE 1 AC5 5 CYS E 43 CYS E 49 CYS E 59 CYS E 62 SITE 2 AC5 5 HOH E 208 SITE 1 AC6 4 CYS E 7 CYS E 10 CYS E 24 CYS E 27 SITE 1 AC7 4 CYS F 43 CYS F 49 CYS F 59 CYS F 62 SITE 1 AC8 4 CYS F 7 CYS F 10 CYS F 24 CYS F 27 CRYST1 48.272 79.829 116.782 90.00 96.75 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020716 0.000000 0.002452 0.00000 SCALE2 0.000000 0.012527 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008623 0.00000