HEADER IMMUNE SYSTEM 28-JAN-14 4ONH TITLE CRYSTAL STRUCTURE OF DN6 TCR COMPND MOL_ID: 1; COMPND 2 MOLECULE: T-CELL RECEPTOR ALPHA; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: T-CELL RECEPTOR BETA; COMPND 8 CHAIN: A; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 GENE: TRAV,TRAC,TRAB; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: INSECT CELLS, HI5 CELLS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS IG FOLD, TCR, ANTIGEN RECOGNITION, MHC LIKE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR S.ROY,E.J.ADAMS REVDAT 3 29-JUL-20 4ONH 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 18-FEB-15 4ONH 1 JRNL REVDAT 1 08-OCT-14 4ONH 0 JRNL AUTH S.ROY,D.LY,N.S.LI,J.D.ALTMAN,J.A.PICCIRILLI,D.B.MOODY, JRNL AUTH 2 E.J.ADAMS JRNL TITL MOLECULAR BASIS OF MYCOBACTERIAL LIPID ANTIGEN PRESENTATION JRNL TITL 2 BY CD1C AND ITS RECOGNITION BY ALPHA BETA T CELLS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 111 E4648 2014 JRNL REFN ISSN 0027-8424 JRNL PMID 25298532 JRNL DOI 10.1073/PNAS.1408549111 REMARK 2 REMARK 2 RESOLUTION. 3.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7_650 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 11276 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.260 REMARK 3 R VALUE (WORKING SET) : 0.257 REMARK 3 FREE R VALUE : 0.317 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.810 REMARK 3 FREE R VALUE TEST SET COUNT : 542 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.6751 - 4.7664 0.99 2754 130 0.2209 0.2871 REMARK 3 2 4.7664 - 3.7877 0.99 2703 135 0.2453 0.3019 REMARK 3 3 3.7877 - 3.3102 1.00 2682 140 0.3290 0.3461 REMARK 3 4 3.3102 - 3.0081 0.96 2595 137 0.3703 0.4448 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.580 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 36.700 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3293 REMARK 3 ANGLE : 0.920 4506 REMARK 3 CHIRALITY : 0.034 517 REMARK 3 PLANARITY : 0.003 587 REMARK 3 DIHEDRAL : 13.008 1083 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 2:83) REMARK 3 ORIGIN FOR THE GROUP (A): -27.9786 9.5255 0.3931 REMARK 3 T TENSOR REMARK 3 T11: 0.4639 T22: 1.0218 REMARK 3 T33: 0.8392 T12: -0.1615 REMARK 3 T13: 0.2205 T23: -0.0835 REMARK 3 L TENSOR REMARK 3 L11: 2.9036 L22: 9.5405 REMARK 3 L33: 4.7861 L12: 0.3230 REMARK 3 L13: 2.0307 L23: 0.7103 REMARK 3 S TENSOR REMARK 3 S11: 0.1268 S12: 0.4545 S13: 0.6154 REMARK 3 S21: 0.1072 S22: -0.4943 S23: 0.7512 REMARK 3 S31: 0.4311 S32: -0.9331 S33: 0.2427 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 84:136) REMARK 3 ORIGIN FOR THE GROUP (A): -15.1971 14.9312 8.8487 REMARK 3 T TENSOR REMARK 3 T11: 0.6513 T22: 0.6472 REMARK 3 T33: 0.7254 T12: -0.0416 REMARK 3 T13: 0.1417 T23: -0.0301 REMARK 3 L TENSOR REMARK 3 L11: 5.8127 L22: 0.7067 REMARK 3 L33: 2.6414 L12: 4.9687 REMARK 3 L13: 2.1484 L23: 1.7910 REMARK 3 S TENSOR REMARK 3 S11: 0.5614 S12: -0.2112 S13: 0.3262 REMARK 3 S21: 0.1523 S22: -0.2312 S23: -0.5081 REMARK 3 S31: 0.4585 S32: -0.3166 S33: -0.1754 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 141:244) REMARK 3 ORIGIN FOR THE GROUP (A): -2.0402 24.1609 9.9528 REMARK 3 T TENSOR REMARK 3 T11: 0.4051 T22: 0.4326 REMARK 3 T33: 0.6324 T12: -0.0261 REMARK 3 T13: -0.0349 T23: -0.0714 REMARK 3 L TENSOR REMARK 3 L11: 6.0281 L22: 2.7867 REMARK 3 L33: 4.5514 L12: -0.3201 REMARK 3 L13: -3.6421 L23: 0.4838 REMARK 3 S TENSOR REMARK 3 S11: 0.2663 S12: -0.3784 S13: 0.8086 REMARK 3 S21: -0.0692 S22: -0.1552 S23: -0.0295 REMARK 3 S31: -0.2285 S32: 0.4432 S33: -0.0915 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 2:35) REMARK 3 ORIGIN FOR THE GROUP (A): -20.5386 -5.5584 22.0047 REMARK 3 T TENSOR REMARK 3 T11: 0.9131 T22: 0.7611 REMARK 3 T33: 0.6249 T12: 0.0977 REMARK 3 T13: -0.0025 T23: 0.1302 REMARK 3 L TENSOR REMARK 3 L11: 6.1651 L22: 6.0532 REMARK 3 L33: 5.4391 L12: 6.1774 REMARK 3 L13: 5.6054 L23: 3.8669 REMARK 3 S TENSOR REMARK 3 S11: 1.1403 S12: -2.6182 S13: -0.7989 REMARK 3 S21: 0.6842 S22: -1.2023 S23: -0.3160 REMARK 3 S31: 0.7469 S32: -1.2071 S33: -0.3654 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 36:53) REMARK 3 ORIGIN FOR THE GROUP (A): -17.5670 -6.2262 12.1899 REMARK 3 T TENSOR REMARK 3 T11: 1.0157 T22: 1.3454 REMARK 3 T33: 0.9083 T12: -0.2011 REMARK 3 T13: -0.2418 T23: -0.5525 REMARK 3 L TENSOR REMARK 3 L11: 1.7106 L22: 2.0387 REMARK 3 L33: 3.0783 L12: -1.1439 REMARK 3 L13: 1.4038 L23: -1.9627 REMARK 3 S TENSOR REMARK 3 S11: 1.4127 S12: 2.2118 S13: -0.5739 REMARK 3 S21: -3.8108 S22: -2.0110 S23: -1.2157 REMARK 3 S31: 1.9977 S32: 0.5715 S33: -0.2548 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 54:105) REMARK 3 ORIGIN FOR THE GROUP (A): -19.5557 -6.4636 17.3559 REMARK 3 T TENSOR REMARK 3 T11: 0.7355 T22: 0.7232 REMARK 3 T33: 0.4511 T12: 0.1130 REMARK 3 T13: -0.0828 T23: -0.0404 REMARK 3 L TENSOR REMARK 3 L11: 9.8197 L22: 7.7577 REMARK 3 L33: 4.4600 L12: 4.0411 REMARK 3 L13: 4.0910 L23: -0.1389 REMARK 3 S TENSOR REMARK 3 S11: -0.6040 S12: 0.3401 S13: -1.3562 REMARK 3 S21: 0.4564 S22: 0.6913 S23: -0.4911 REMARK 3 S31: -0.5452 S32: 0.5315 S33: 0.0080 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 106:158) REMARK 3 ORIGIN FOR THE GROUP (A): -0.5163 19.7777 27.5994 REMARK 3 T TENSOR REMARK 3 T11: 0.7329 T22: 1.3149 REMARK 3 T33: 0.6970 T12: -0.0538 REMARK 3 T13: -0.1568 T23: -0.1320 REMARK 3 L TENSOR REMARK 3 L11: 3.4620 L22: 8.4509 REMARK 3 L33: 2.3020 L12: 1.4489 REMARK 3 L13: -0.8545 L23: 2.9070 REMARK 3 S TENSOR REMARK 3 S11: 0.1409 S12: -0.4072 S13: 0.1335 REMARK 3 S21: 0.6098 S22: -0.1400 S23: 0.1297 REMARK 3 S31: -0.2573 S32: 0.3023 S33: -0.1834 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 159:169) REMARK 3 ORIGIN FOR THE GROUP (A): 7.2371 7.8501 20.1410 REMARK 3 T TENSOR REMARK 3 T11: 1.0123 T22: 1.1739 REMARK 3 T33: 0.9596 T12: -0.0442 REMARK 3 T13: -0.1725 T23: 0.4371 REMARK 3 L TENSOR REMARK 3 L11: 9.5808 L22: 5.5141 REMARK 3 L33: 3.9539 L12: -3.5523 REMARK 3 L13: -5.4170 L23: 3.7977 REMARK 3 S TENSOR REMARK 3 S11: 0.8394 S12: 2.1136 S13: 0.3399 REMARK 3 S21: -2.2217 S22: -0.8096 S23: -0.4330 REMARK 3 S31: -1.1230 S32: 0.0770 S33: 0.2960 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 170:187) REMARK 3 ORIGIN FOR THE GROUP (A): -1.0538 28.6824 28.6305 REMARK 3 T TENSOR REMARK 3 T11: 1.7999 T22: 1.1758 REMARK 3 T33: 0.5908 T12: 0.0383 REMARK 3 T13: -0.1349 T23: -0.0459 REMARK 3 L TENSOR REMARK 3 L11: 7.3287 L22: 6.0711 REMARK 3 L33: 9.8783 L12: 6.5605 REMARK 3 L13: 0.9601 L23: 2.6495 REMARK 3 S TENSOR REMARK 3 S11: -0.0955 S12: 1.1414 S13: 0.0322 REMARK 3 S21: 3.2215 S22: 1.9054 S23: 0.8812 REMARK 3 S31: -1.3470 S32: 1.8539 S33: -1.6145 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 188:200) REMARK 3 ORIGIN FOR THE GROUP (A): 3.8854 21.9851 37.8744 REMARK 3 T TENSOR REMARK 3 T11: 1.7855 T22: 1.7669 REMARK 3 T33: 1.1687 T12: 0.2523 REMARK 3 T13: -0.3509 T23: 0.1765 REMARK 3 L TENSOR REMARK 3 L11: 4.4921 L22: 1.9379 REMARK 3 L33: 4.9548 L12: 5.7123 REMARK 3 L13: -4.4801 L23: -4.7195 REMARK 3 S TENSOR REMARK 3 S11: 1.4557 S12: 3.3658 S13: -0.2396 REMARK 3 S21: 4.5115 S22: -0.5767 S23: 0.4873 REMARK 3 S31: -0.9812 S32: 2.7582 S33: -1.0597 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ONH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000084714. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03321 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11289 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.12200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.56100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES, PH-6.5, 20% PEG 4000, 0.6 M REMARK 280 NACL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K, PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 71.91250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.03150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 71.91250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.03150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -102.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -30.35074 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 62.56045 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 401 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN B 1 REMARK 465 HIS B 137 REMARK 465 THR B 138 REMARK 465 GLN B 139 REMARK 465 LYS B 140 REMARK 465 PRO B 181 REMARK 465 ALA B 182 REMARK 465 LEU B 183 REMARK 465 ASN B 184 REMARK 465 ASP B 185 REMARK 465 PRO A 201 REMARK 465 GLU A 202 REMARK 465 SER A 203 REMARK 465 SER A 204 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET B 27 CG SD CE REMARK 470 MET B 41 CG SD CE REMARK 470 LYS B 57 CG CD CE NZ REMARK 470 GLU B 79 CG CD OE1 OE2 REMARK 470 ARG B 94 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 115 CG CD OE1 OE2 REMARK 470 ASP B 116 CG OD1 OD2 REMARK 470 LYS B 118 CG CD CE NZ REMARK 470 VAL B 120 CG1 CG2 REMARK 470 GLU B 129 CG CD OE1 OE2 REMARK 470 GLU B 132 CG CD OE1 OE2 REMARK 470 SER B 136 OG REMARK 470 THR B 142 OG1 CG2 REMARK 470 LYS B 164 CG CD CE NZ REMARK 470 LYS B 178 CG CD CE NZ REMARK 470 GLN B 180 CG CD OE1 NE2 REMARK 470 SER B 197 CB OG REMARK 470 ASP B 221 CG OD1 OD2 REMARK 470 TRP B 223 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 223 CZ3 CH2 REMARK 470 GLN B 225 CG CD OE1 NE2 REMARK 470 ASP B 226 CG OD1 OD2 REMARK 470 ASP B 244 CG OD1 OD2 REMARK 470 LYS A 1 CG CD CE NZ REMARK 470 SER A 5 OG REMARK 470 ASP A 15 CG OD1 OD2 REMARK 470 VAL A 17 CG1 CG2 REMARK 470 GLU A 24 CG CD OE1 OE2 REMARK 470 VAL A 25 CG1 CG2 REMARK 470 ASN A 27 CG OD1 ND2 REMARK 470 ARG A 29 CG CD NE CZ NH1 NH2 REMARK 470 SER A 30 OG REMARK 470 LYS A 35 CG CD CE NZ REMARK 470 LYS A 38 CG CD CE NZ REMARK 470 MET A 46 CG SD CE REMARK 470 THR A 48 OG1 CG2 REMARK 470 GLU A 53 CG CD OE1 OE2 REMARK 470 LYS A 54 CG CD CE NZ REMARK 470 LYS A 55 CG CD CE NZ REMARK 470 SER A 61 OG REMARK 470 ILE A 62 CG1 CG2 CD1 REMARK 470 ASP A 64 CG OD1 OD2 REMARK 470 LYS A 65 CG CD CE NZ REMARK 470 LYS A 66 CG CD CE NZ REMARK 470 GLU A 67 CG CD OE1 OE2 REMARK 470 LEU A 68 CG CD1 CD2 REMARK 470 PHE A 69 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE A 71 CG1 CG2 CD1 REMARK 470 THR A 77 OG1 CG2 REMARK 470 THR A 93 OG1 CG2 REMARK 470 THR A 99 OG1 CG2 REMARK 470 GLN A 102 CG CD OE1 NE2 REMARK 470 ILE A 105 CG1 CG2 CD1 REMARK 470 LEU A 106 CG CD1 CD2 REMARK 470 LYS A 114 CG CD CE NZ REMARK 470 ARG A 123 CG CD NE CZ NH1 NH2 REMARK 470 SER A 125 OG REMARK 470 LYS A 126 CG CD CE NZ REMARK 470 SER A 127 OG REMARK 470 ASP A 129 CG OD1 OD2 REMARK 470 LYS A 130 CG CD CE NZ REMARK 470 SER A 131 OG REMARK 470 THR A 136 OG1 CG2 REMARK 470 SER A 145 OG REMARK 470 GLN A 146 CG CD OE1 NE2 REMARK 470 LYS A 148 CG CD CE NZ REMARK 470 LYS A 157 CG CD CE NZ REMARK 470 ARG A 163 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 168 CG CD CE NZ REMARK 470 LYS A 178 CG CD CE NZ REMARK 470 SER A 179 OG REMARK 470 CYS A 183 SG REMARK 470 ASN A 185 CG OD1 ND2 REMARK 470 ILE A 192 CG1 CG2 CD1 REMARK 470 ASP A 195 CG OD1 OD2 REMARK 470 PHE A 198 CG CD1 CD2 CE1 CE2 CZ REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 GLY B 40 REMARK 475 GLN B 225 REMARK 475 SER A 128 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ALA B 2 N CB REMARK 480 GLN B 22 CG CD OE1 REMARK 480 ASP B 26 CG OD1 OD2 REMARK 480 PRO B 39 N CA C CB CG CD REMARK 480 LYS B 44 CD CE NZ REMARK 480 GLU B 59 CD OE1 OE2 REMARK 480 PRO B 61 CG REMARK 480 SER B 67 OG REMARK 480 SER B 69 OG REMARK 480 ASP B 73 OD1 OD2 REMARK 480 ARG B 77 CD NE CZ NH1 NH2 REMARK 480 TYR B 89 CD2 CE2 REMARK 480 LEU B 97 CG CD1 REMARK 480 LEU B 110 CB CG CD2 REMARK 480 PHE B 121 CZ REMARK 480 GLU B 129 O REMARK 480 PRO B 130 CB CG CD REMARK 480 GLU B 134 CD OE1 OE2 REMARK 480 VAL B 166 CG1 CG2 REMARK 480 SER B 168 CB OG REMARK 480 ARG B 187 CZ NH1 NH2 REMARK 480 ASN B 220 CG OD1 ND2 REMARK 480 THR B 224 O REMARK 480 ARG B 227 NE CZ NH1 NH2 REMARK 480 GLU B 238 CG CD OE1 REMARK 480 SER A 22 OG REMARK 480 PHE A 28 CE1 CE2 CZ REMARK 480 PHE A 45 CE1 CE2 CZ REMARK 480 SER A 49 C CB OG REMARK 480 SER A 50 CB OG REMARK 480 SER A 56 OG REMARK 480 LEU A 59 O CD1 REMARK 480 LYS A 65 O REMARK 480 ALA A 88 O REMARK 480 LYS A 97 NZ REMARK 480 SER A 140 CB OG REMARK 480 THR A 142 OG1 CG2 REMARK 480 LYS A 148 N CA C O REMARK 480 ILE A 154 CD1 REMARK 480 ASP A 166 CG REMARK 480 LYS A 178 C O REMARK 480 ALA A 186 CB REMARK 480 PHE A 187 CE2 CZ REMARK 480 ASN A 189 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU B 219 O HOH B 401 2.06 REMARK 500 O PRO A 193 OG1 THR A 196 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR B 7 143.18 -174.59 REMARK 500 ILE B 46 -67.60 -103.92 REMARK 500 HIS B 95 -114.61 59.02 REMARK 500 LEU B 117 -7.60 66.63 REMARK 500 PRO B 152 -168.75 -72.40 REMARK 500 SER B 168 -71.58 -53.83 REMARK 500 SER B 218 -68.79 -102.53 REMARK 500 TRP B 223 -137.49 58.56 REMARK 500 ARG B 227 -138.56 59.27 REMARK 500 ALA B 228 -149.71 49.05 REMARK 500 ASP A 15 -142.69 53.44 REMARK 500 SER A 49 -6.72 63.67 REMARK 500 LYS A 66 73.39 57.28 REMARK 500 ALA A 88 -141.83 53.17 REMARK 500 TRP A 89 158.54 176.60 REMARK 500 SER A 94 70.69 59.62 REMARK 500 GLN A 113 -61.13 -92.79 REMARK 500 SER A 127 -168.65 -162.81 REMARK 500 ASP A 129 39.35 70.04 REMARK 500 ASP A 137 -1.71 78.06 REMARK 500 SER A 150 -5.62 67.67 REMARK 500 ASP A 166 -4.30 67.00 REMARK 500 SER A 171 161.46 179.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 NAG B 301 DBREF 4ONH B 1 244 PDB 4ONH 4ONH 1 244 DBREF 4ONH A 0 204 PDB 4ONH 4ONH 0 204 SEQRES 1 B 243 ASN ALA GLY VAL THR GLN THR PRO LYS PHE ARG ILE LEU SEQRES 2 B 243 LYS ILE GLY GLN SER MET THR LEU GLN CYS THR GLN ASP SEQRES 3 B 243 MET ASN HIS ASN TYR MET TYR TRP TYR ARG GLN ASP PRO SEQRES 4 B 243 GLY MET GLY LEU LYS LEU ILE TYR TYR SER VAL GLY ALA SEQRES 5 B 243 GLY ILE THR ASP LYS GLY GLU VAL PRO ASN GLY TYR ASN SEQRES 6 B 243 VAL SER ARG SER THR THR GLU ASP PHE PRO LEU ARG LEU SEQRES 7 B 243 GLU LEU ALA ALA PRO SER GLN THR SER VAL TYR PHE CYS SEQRES 8 B 243 ALA SER ARG HIS GLY LEU ALA SER TYR GLU GLN TYR PHE SEQRES 9 B 243 GLY PRO GLY THR ARG LEU THR VAL THR GLU ASP LEU LYS SEQRES 10 B 243 ASN VAL PHE PRO PRO GLU VAL ALA VAL PHE GLU PRO SER SEQRES 11 B 243 GLU ALA GLU ILE SER HIS THR GLN LYS ALA THR LEU VAL SEQRES 12 B 243 CYS LEU ALA THR GLY PHE TYR PRO ASP HIS VAL GLU LEU SEQRES 13 B 243 SER TRP TRP VAL ASN GLY LYS GLU VAL HIS SER GLY VAL SEQRES 14 B 243 CYS THR ASP PRO GLN PRO LEU LYS GLU GLN PRO ALA LEU SEQRES 15 B 243 ASN ASP SER ARG TYR ALA LEU SER SER ARG LEU ARG VAL SEQRES 16 B 243 SER ALA THR PHE TRP GLN ASN PRO ARG ASN HIS PHE ARG SEQRES 17 B 243 CYS GLN VAL GLN PHE TYR GLY LEU SER GLU ASN ASP GLU SEQRES 18 B 243 TRP THR GLN ASP ARG ALA LYS PRO VAL THR GLN ILE VAL SEQRES 19 B 243 SER ALA GLU ALA TRP GLY ARG ALA ASP SEQRES 1 A 205 PRO LYS VAL VAL GLN SER PRO LEU SER LEU VAL VAL HIS SEQRES 2 A 205 GLU GLY ASP THR VAL THR LEU ASN CYS SER TYR GLU VAL SEQRES 3 A 205 THR ASN PHE ARG SER LEU LEU TRP TYR LYS GLN GLU LYS SEQRES 4 A 205 LYS ALA PRO THR PHE LEU PHE MET LEU THR SER SER GLY SEQRES 5 A 205 ILE GLU LYS LYS SER GLY ARG LEU SER SER ILE LEU ASP SEQRES 6 A 205 LYS LYS GLU LEU PHE SER ILE LEU ASN ILE THR ALA THR SEQRES 7 A 205 GLN THR GLY ASP SER ALA VAL TYR LEU CYS ALA TRP ALA SEQRES 8 A 205 GLY GLY THR SER TYR GLY LYS LEU THR PHE GLY GLN GLY SEQRES 9 A 205 THR ILE LEU THR VAL HIS PRO ASN ILE GLN LYS PRO ASP SEQRES 10 A 205 PRO ALA VAL TYR GLN LEU ARG ASP SER LYS SER SER ASP SEQRES 11 A 205 LYS SER VAL CYS LEU PHE THR ASP PHE ASP SER GLN THR SEQRES 12 A 205 ASN VAL SER GLN SER LYS ASP SER ASP VAL TYR ILE THR SEQRES 13 A 205 ASP LYS CYS VAL LEU ASP MET ARG SER MET ASP PHE LYS SEQRES 14 A 205 SER ASN SER ALA VAL ALA TRP SER ASN LYS SER ASP PHE SEQRES 15 A 205 ALA CYS ALA ASN ALA PHE ASN ASN SER ILE ILE PRO GLU SEQRES 16 A 205 ASP THR PHE PHE PRO SER PRO GLU SER SER MODRES 4ONH ASN B 65 ASN GLYCOSYLATION SITE MODRES 4ONH ASN A 20 ASN GLYCOSYLATION SITE HET NAG B 301 14 HET CL B 302 1 HET CL B 303 1 HET CL B 304 1 HET GOL B 305 6 HET NAG A 301 14 HET GOL A 302 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 4 CL 3(CL 1-) FORMUL 7 GOL 2(C3 H8 O3) FORMUL 10 HOH *4(H2 O) HELIX 1 1 ALA B 82 THR B 86 5 5 HELIX 2 2 SER B 197 GLN B 202 1 6 HELIX 3 3 GLN A 78 SER A 82 5 5 HELIX 4 4 ALA A 182 ASN A 188 1 7 SHEET 1 A 3 THR B 5 THR B 7 0 SHEET 2 A 3 MET B 19 THR B 24 -1 O THR B 24 N THR B 5 SHEET 3 A 3 LEU B 76 LEU B 78 -1 O LEU B 76 N LEU B 21 SHEET 1 B 6 PHE B 10 LEU B 13 0 SHEET 2 B 6 THR B 108 VAL B 112 1 O ARG B 109 N ARG B 11 SHEET 3 B 6 SER B 87 HIS B 95 -1 N SER B 87 O LEU B 110 SHEET 4 B 6 TYR B 31 ASP B 38 -1 N TYR B 31 O HIS B 95 SHEET 5 B 6 GLY B 42 GLY B 51 -1 O ILE B 46 N TRP B 34 SHEET 6 B 6 ILE B 54 LYS B 57 -1 O ASP B 56 N TYR B 48 SHEET 1 C 4 PHE B 10 LEU B 13 0 SHEET 2 C 4 THR B 108 VAL B 112 1 O ARG B 109 N ARG B 11 SHEET 3 C 4 SER B 87 HIS B 95 -1 N SER B 87 O LEU B 110 SHEET 4 C 4 TYR B 103 PHE B 104 -1 O TYR B 103 N SER B 93 SHEET 1 D 8 VAL B 170 THR B 172 0 SHEET 2 D 8 TYR B 188 ARG B 195 -1 O ARG B 193 N CYS B 171 SHEET 3 D 8 THR B 142 PHE B 150 -1 N ALA B 147 O LEU B 190 SHEET 4 D 8 GLU B 124 GLU B 129 -1 N PHE B 128 O VAL B 144 SHEET 5 D 8 ALA A 118 ASP A 124 -1 O ARG A 123 N GLU B 129 SHEET 6 D 8 SER A 131 THR A 136 -1 O THR A 136 N ALA A 118 SHEET 7 D 8 LYS A 168 SER A 176 -1 O ALA A 172 N PHE A 135 SHEET 8 D 8 TYR A 153 ILE A 154 -1 N TYR A 153 O TRP A 175 SHEET 1 E 8 LEU B 177 LYS B 178 0 SHEET 2 E 8 TYR B 188 ARG B 195 -1 O ALA B 189 N LEU B 177 SHEET 3 E 8 THR B 142 PHE B 150 -1 N ALA B 147 O LEU B 190 SHEET 4 E 8 GLU B 124 GLU B 129 -1 N PHE B 128 O VAL B 144 SHEET 5 E 8 ALA A 118 ASP A 124 -1 O ARG A 123 N GLU B 129 SHEET 6 E 8 SER A 131 THR A 136 -1 O THR A 136 N ALA A 118 SHEET 7 E 8 LYS A 168 SER A 176 -1 O ALA A 172 N PHE A 135 SHEET 8 E 8 CYS A 158 ASP A 161 -1 N LEU A 160 O SER A 169 SHEET 1 F 4 LYS B 164 GLU B 165 0 SHEET 2 F 4 VAL B 155 VAL B 161 -1 N VAL B 161 O LYS B 164 SHEET 3 F 4 HIS B 207 PHE B 214 -1 O ARG B 209 N TRP B 160 SHEET 4 F 4 GLN B 233 TRP B 240 -1 O ALA B 239 N PHE B 208 SHEET 1 G 2 VAL A 2 SER A 5 0 SHEET 2 G 2 ASN A 20 TYR A 23 -1 O SER A 22 N VAL A 3 SHEET 1 H 5 SER A 8 HIS A 12 0 SHEET 2 H 5 THR A 104 HIS A 109 1 O ILE A 105 N LEU A 9 SHEET 3 H 5 ALA A 83 LEU A 86 -1 N ALA A 83 O LEU A 106 SHEET 4 H 5 LEU A 32 GLN A 36 -1 N GLN A 36 O VAL A 84 SHEET 5 H 5 THR A 42 MET A 46 -1 O LEU A 44 N TRP A 33 SHEET 1 I 2 LYS A 55 SER A 56 0 SHEET 2 I 2 LEU A 59 SER A 60 -1 O LEU A 59 N SER A 56 SSBOND 1 CYS B 23 CYS B 91 1555 1555 2.03 SSBOND 2 CYS B 145 CYS B 210 1555 1555 2.03 SSBOND 3 CYS B 171 CYS A 158 1555 1555 2.03 SSBOND 4 CYS A 21 CYS A 87 1555 1555 2.03 LINK ND2 ASN B 65 C1 NAG B 301 1555 1555 1.44 LINK ND2 ASN A 20 C1 NAG A 301 1555 1555 1.44 CISPEP 1 THR B 7 PRO B 8 0 -0.91 CISPEP 2 HIS B 95 GLY B 96 0 14.23 CISPEP 3 PRO B 130 SER B 131 0 -10.15 CISPEP 4 TYR B 151 PRO B 152 0 -0.92 CISPEP 5 SER B 186 ARG B 187 0 -1.03 CISPEP 6 ASP B 221 GLU B 222 0 4.13 CISPEP 7 SER A 5 PRO A 6 0 -2.24 CISPEP 8 THR A 26 ASN A 27 0 -13.25 CISPEP 9 GLY A 51 ILE A 52 0 -4.62 CISPEP 10 LYS A 65 LYS A 66 0 -8.47 CISPEP 11 GLY A 92 THR A 93 0 0.04 CISPEP 12 TYR A 95 GLY A 96 0 -12.73 CRYST1 143.825 64.063 69.534 90.00 115.88 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006953 0.000000 0.003374 0.00000 SCALE2 0.000000 0.015610 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015985 0.00000