HEADER TRANSFERASE 29-JAN-14 4ONU TITLE CAMP-BINDING ACYLTRANSFERASE FROM MYCOBACTERIUM SMEGMATIS, E234A TITLE 2 MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACETYLTRANSFERASE PAT; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GCN5-RELATED N-ACETYLTRANSFERASE, GNAT, PROTEIN COMPND 5 ACETYLTRANSFERASE, PAT; COMPND 6 EC: 2.3.1.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS; SOURCE 3 ORGANISM_TAXID: 246196; SOURCE 4 STRAIN: ATCC 700084 / MC(2)155; SOURCE 5 GENE: MSMEG_5458, MSMEI_5308; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPROEX-HTA KEYWDS ALPHA-BETA FOLD, LINKER PEPTIDE, CYCLIC NUCLEOTIDE BINDING DOMAIN, KEYWDS 2 ACYL-TRANSFERASE DOMAIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.PODOBNIK,K.REBOLJ,S.S.VISWESWARIAH REVDAT 4 20-SEP-23 4ONU 1 REMARK SEQADV REVDAT 3 22-NOV-17 4ONU 1 REMARK REVDAT 2 18-JUN-14 4ONU 1 JRNL REVDAT 1 30-APR-14 4ONU 0 JRNL AUTH M.PODOBNIK,N.SIDDIQUI,K.REBOLJ,S.NAMBI,F.MERZEL, JRNL AUTH 2 S.S.VISWESWARIAH JRNL TITL ALLOSTERY AND CONFORMATIONAL DYNAMICS IN CAMP-BINDING JRNL TITL 2 ACYLTRANSFERASES. JRNL REF J.BIOL.CHEM. V. 289 16588 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 24748621 JRNL DOI 10.1074/JBC.M114.560086 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 16580 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1674 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 915 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE SET COUNT : 112 REMARK 3 BIN FREE R VALUE : 0.3430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2453 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 124 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.36000 REMARK 3 B22 (A**2) : -2.06000 REMARK 3 B33 (A**2) : 0.69000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.350 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.255 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.180 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.955 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2502 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3404 ; 1.682 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 310 ; 6.454 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 113 ;34.058 ;22.124 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 404 ;18.989 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;19.124 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 396 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1903 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 31 REMARK 3 ORIGIN FOR THE GROUP (A): 14.7635 113.7464 18.3646 REMARK 3 T TENSOR REMARK 3 T11: 0.1296 T22: 0.1251 REMARK 3 T33: 0.1286 T12: -0.0757 REMARK 3 T13: -0.0146 T23: -0.0563 REMARK 3 L TENSOR REMARK 3 L11: 4.7938 L22: 11.2999 REMARK 3 L33: 9.4923 L12: -1.7165 REMARK 3 L13: -1.3439 L23: -1.4943 REMARK 3 S TENSOR REMARK 3 S11: -0.0068 S12: -0.2157 S13: 0.5402 REMARK 3 S21: 0.5517 S22: 0.1881 S23: -0.5487 REMARK 3 S31: -0.9080 S32: 0.4297 S33: -0.1813 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 32 A 115 REMARK 3 ORIGIN FOR THE GROUP (A): -3.6719 102.9687 16.8331 REMARK 3 T TENSOR REMARK 3 T11: 0.0893 T22: 0.1438 REMARK 3 T33: 0.1242 T12: -0.0098 REMARK 3 T13: -0.0057 T23: -0.0105 REMARK 3 L TENSOR REMARK 3 L11: 1.6617 L22: 0.9648 REMARK 3 L33: 1.3933 L12: -0.1058 REMARK 3 L13: -0.7786 L23: -0.3631 REMARK 3 S TENSOR REMARK 3 S11: 0.0913 S12: -0.3021 S13: -0.0266 REMARK 3 S21: 0.1922 S22: 0.0109 S23: 0.0469 REMARK 3 S31: -0.0632 S32: 0.0340 S33: -0.1022 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 116 A 182 REMARK 3 ORIGIN FOR THE GROUP (A): 9.5856 85.6159 10.9617 REMARK 3 T TENSOR REMARK 3 T11: 0.1858 T22: 0.1400 REMARK 3 T33: 0.1346 T12: 0.0202 REMARK 3 T13: -0.0081 T23: -0.0055 REMARK 3 L TENSOR REMARK 3 L11: 0.6166 L22: 5.6786 REMARK 3 L33: 1.3108 L12: 1.6410 REMARK 3 L13: -0.5988 L23: -1.0781 REMARK 3 S TENSOR REMARK 3 S11: -0.1744 S12: 0.0539 S13: -0.0372 REMARK 3 S21: -0.6092 S22: 0.0750 S23: 0.0292 REMARK 3 S31: 0.3676 S32: -0.0006 S33: 0.0993 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 183 A 333 REMARK 3 ORIGIN FOR THE GROUP (A): 4.9659 77.5523 0.8265 REMARK 3 T TENSOR REMARK 3 T11: 0.5040 T22: 0.0365 REMARK 3 T33: 0.0641 T12: 0.0131 REMARK 3 T13: -0.0075 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 0.4643 L22: 3.0646 REMARK 3 L33: 1.1475 L12: 0.0857 REMARK 3 L13: 0.0584 L23: -0.9975 REMARK 3 S TENSOR REMARK 3 S11: 0.0215 S12: 0.0595 S13: -0.1012 REMARK 3 S21: -0.8368 S22: -0.0196 S23: 0.0094 REMARK 3 S31: 0.7467 S32: 0.0316 S33: -0.0019 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4ONU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000084727. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 5.2R REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97500 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE-CRYSTAL FIXED REMARK 200 EXIT REMARK 200 OPTICS : CMOS HYBRID-PIXEL TECHNOLOGY REMARK 200 OPERATING IN DINGLE PHOTON REMARK 200 COUTING MODE REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16630 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 12.70 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.00 REMARK 200 R MERGE FOR SHELL (I) : 0.65500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4OLL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, NACL, BIS-TRIS, CACL2, DAPD, REMARK 280 PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.15900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.98450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.38200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.98450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.15900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.38200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -6 REMARK 465 ALA A -5 REMARK 465 MET A -4 REMARK 465 ASP A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 ASN A 0 REMARK 465 VAL A 1 REMARK 465 ILE A 78 REMARK 465 GLU A 79 REMARK 465 PRO A 80 REMARK 465 GLY A 81 REMARK 465 ASN A 168 REMARK 465 GLY A 169 REMARK 465 PRO A 170 REMARK 465 VAL A 171 REMARK 465 GLU A 172 REMARK 465 PHE A 173 REMARK 465 SER A 174 REMARK 465 SER A 175 REMARK 465 GLU A 176 REMARK 465 THR A 177 REMARK 465 LEU A 178 REMARK 465 ASP A 294 REMARK 465 LEU A 295 REMARK 465 GLY A 296 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 66 CG HIS A 66 CD2 0.056 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 186 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 76 -82.74 -165.30 REMARK 500 VAL A 158 152.99 -45.97 REMARK 500 ARG A 180 -35.26 -156.13 REMARK 500 PHE A 182 25.25 -67.96 REMARK 500 ASN A 229 16.77 59.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4OLL RELATED DB: PDB REMARK 900 RELATED ID: 4ORF RELATED DB: PDB DBREF 4ONU A 2 333 UNP A0R3F9 PAT_MYCS2 2 333 SEQADV 4ONU GLY A -6 UNP A0R3F9 EXPRESSION TAG SEQADV 4ONU ALA A -5 UNP A0R3F9 EXPRESSION TAG SEQADV 4ONU MET A -4 UNP A0R3F9 EXPRESSION TAG SEQADV 4ONU ASP A -3 UNP A0R3F9 EXPRESSION TAG SEQADV 4ONU PRO A -2 UNP A0R3F9 EXPRESSION TAG SEQADV 4ONU GLY A -1 UNP A0R3F9 EXPRESSION TAG SEQADV 4ONU ASN A 0 UNP A0R3F9 EXPRESSION TAG SEQADV 4ONU VAL A 1 UNP A0R3F9 EXPRESSION TAG SEQADV 4ONU ALA A 234 UNP A0R3F9 GLU 234 ENGINEERED MUTATION SEQRES 1 A 340 GLY ALA MET ASP PRO GLY ASN VAL ALA GLU LEU THR GLU SEQRES 2 A 340 VAL ARG ALA ALA ASP LEU ALA ALA LEU GLU PHE PHE THR SEQRES 3 A 340 GLY CYS ARG PRO SER ALA LEU GLU PRO LEU ALA THR GLN SEQRES 4 A 340 LEU ARG PRO LEU LYS ALA GLU PRO GLY GLN VAL LEU ILE SEQRES 5 A 340 ARG GLN GLY ASP PRO ALA LEU THR PHE MET LEU ILE GLU SEQRES 6 A 340 SER GLY ARG VAL GLN VAL SER HIS ALA VAL ALA ASP GLY SEQRES 7 A 340 PRO PRO ILE VAL LEU ASP ILE GLU PRO GLY LEU ILE ILE SEQRES 8 A 340 GLY GLU ILE ALA LEU LEU ARG ASP ALA PRO ARG THR ALA SEQRES 9 A 340 THR VAL VAL ALA ALA GLU PRO VAL ILE GLY TRP VAL GLY SEQRES 10 A 340 ASP ARG ASP ALA PHE ASP THR ILE LEU HIS LEU PRO GLY SEQRES 11 A 340 MET PHE ASP ARG LEU VAL ARG ILE ALA ARG GLN ARG LEU SEQRES 12 A 340 ALA ALA PHE ILE THR PRO ILE PRO VAL GLN VAL ARG THR SEQRES 13 A 340 GLY GLU TRP PHE TYR LEU ARG PRO VAL LEU PRO GLY ASP SEQRES 14 A 340 VAL GLU ARG THR LEU ASN GLY PRO VAL GLU PHE SER SER SEQRES 15 A 340 GLU THR LEU TYR ARG ARG PHE GLN SER VAL ARG LYS PRO SEQRES 16 A 340 THR ARG ALA LEU LEU GLU TYR LEU PHE GLU VAL ASP TYR SEQRES 17 A 340 ALA ASP HIS PHE VAL TRP VAL MET THR GLU GLY ALA LEU SEQRES 18 A 340 GLY PRO VAL ILE ALA ASP ALA ARG PHE VAL ARG GLU GLY SEQRES 19 A 340 HIS ASN ALA THR MET ALA ALA VAL ALA PHE THR VAL GLY SEQRES 20 A 340 ASP ASP TYR GLN GLY ARG GLY ILE GLY SER PHE LEU MET SEQRES 21 A 340 GLY ALA LEU ILE VAL SER ALA ASN TYR VAL GLY VAL GLN SEQRES 22 A 340 ARG PHE ASN ALA ARG VAL LEU THR ASP ASN MET ALA MET SEQRES 23 A 340 ARG LYS ILE MET ASP ARG LEU GLY ALA VAL TRP VAL ARG SEQRES 24 A 340 GLU ASP LEU GLY VAL VAL MET THR GLU VAL ASP VAL PRO SEQRES 25 A 340 PRO VAL ASP THR VAL PRO PHE GLU PRO GLU LEU ILE ASP SEQRES 26 A 340 GLN ILE ARG ASP ALA THR ARG LYS VAL ILE ARG ALA VAL SEQRES 27 A 340 SER GLN HET CA A 401 1 HET CA A 402 1 HETNAM CA CALCIUM ION FORMUL 2 CA 2(CA 2+) FORMUL 4 HOH *124(H2 O) HELIX 1 1 ALA A 2 ALA A 14 1 13 HELIX 2 2 LEU A 15 THR A 19 5 5 HELIX 3 3 ARG A 22 LEU A 33 1 12 HELIX 4 4 GLY A 85 ASP A 92 1 8 HELIX 5 5 ASP A 111 LEU A 121 1 11 HELIX 6 6 GLY A 123 ALA A 138 1 16 HELIX 7 7 ASP A 162 THR A 166 5 5 HELIX 8 8 THR A 189 VAL A 199 1 11 HELIX 9 9 GLY A 247 GLY A 264 1 18 HELIX 10 10 ASN A 276 ARG A 285 1 10 HELIX 11 11 PRO A 306 VAL A 310 5 5 HELIX 12 12 GLU A 313 VAL A 331 1 19 SHEET 1 A 4 ARG A 34 ALA A 38 0 SHEET 2 A 4 VAL A 105 GLY A 110 -1 O VAL A 105 N ALA A 38 SHEET 3 A 4 PHE A 54 SER A 59 -1 N LEU A 56 O TRP A 108 SHEET 4 A 4 ILE A 83 ILE A 84 -1 O ILE A 84 N MET A 55 SHEET 1 B 4 VAL A 43 ILE A 45 0 SHEET 2 B 4 THR A 98 ALA A 101 -1 O VAL A 99 N LEU A 44 SHEET 3 B 4 VAL A 62 HIS A 66 -1 N SER A 65 O THR A 98 SHEET 4 B 4 ILE A 74 VAL A 75 -1 O ILE A 74 N HIS A 66 SHEET 1 C 7 ILE A 143 GLN A 146 0 SHEET 2 C 7 TRP A 152 PRO A 157 -1 O PHE A 153 N VAL A 145 SHEET 3 C 7 HIS A 204 THR A 210 -1 O VAL A 208 N ARG A 156 SHEET 4 C 7 VAL A 217 ARG A 225 -1 O ILE A 218 N MET A 209 SHEET 5 C 7 MET A 232 VAL A 239 -1 O ALA A 234 N VAL A 224 SHEET 6 C 7 ARG A 267 VAL A 272 1 O ASN A 269 N VAL A 235 SHEET 7 C 7 VAL A 298 ASP A 303 -1 O VAL A 302 N PHE A 268 LINK CA CA A 402 O HOH A 538 1555 1555 2.64 SITE 1 AC1 3 ASP A 92 HIS A 120 ARG A 186 SITE 1 AC2 1 HOH A 538 CRYST1 38.318 82.764 105.969 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026097 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012083 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009437 0.00000