HEADER HYDROLASE 03-FEB-14 4OOK TITLE THIRD METAL BOUND M.TUBERCULOSIS METHIONINE AMINOPEPTIDASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHIONINE AMINOPEPTIDASE 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MAP 2, METAP 2, PEPTIDASE M; COMPND 5 EC: 3.4.11.18; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: MAP, MAPB, RV2861C, MT2929, MTV003.07C; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AMINOPEPTIDASES, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.REDDI,A.ADDLAGATTA REVDAT 3 20-MAR-24 4OOK 1 REMARK LINK REVDAT 2 20-NOV-19 4OOK 1 SEQADV LINK REVDAT 1 04-FEB-15 4OOK 0 JRNL AUTH R.REDDI,T.ARYA,C.KISHOR,R.GUMPENA,R.J.GANJI,S.BHUKYA, JRNL AUTH 2 A.ADDLAGATTA JRNL TITL SELECTIVE TARGETING OF THE CONSERVED ACTIVE SITE CYSTEINE OF JRNL TITL 2 MYCOBACTERIUM TUBERCULOSIS METHIONINE AMINOPEPTIDASE WITH JRNL TITL 3 ELECTROPHILIC REAGENTS JRNL REF FEBS J. V. 281 4240 2014 JRNL REFN ISSN 1742-464X JRNL PMID 24841365 JRNL DOI 10.1111/FEBS.12847 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 19549 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1061 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1390 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2120 REMARK 3 BIN FREE R VALUE SET COUNT : 77 REMARK 3 BIN FREE R VALUE : 0.2960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2152 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 97 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.158 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.152 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.102 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.437 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2202 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2074 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3012 ; 1.857 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4766 ; 0.937 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 281 ; 6.489 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 94 ;38.705 ;23.723 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 335 ;16.058 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;19.546 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 348 ; 0.135 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2512 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 487 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4OOK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000084753. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JAN-14 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20897 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 19.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27% PEG 2000, BISTRIS, OXIDIZED BETA REMARK 280 -MERCAPTOETHANOL, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 24.06800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 SER A 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 16 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 LEU A 180 CB - CG - CD2 ANGL. DEV. = 10.7 DEGREES REMARK 500 ARG A 200 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 LEU A 273 CA - CB - CG ANGL. DEV. = 15.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 109 -107.98 52.52 REMARK 500 THR A 120 120.61 -39.59 REMARK 500 ASP A 253 -9.33 -47.48 REMARK 500 TRP A 255 -54.59 -124.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 305 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 50 O REMARK 620 2 HIS A 140 O 115.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 304 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 112 O REMARK 620 2 THR A 265 OG1 122.0 REMARK 620 3 HOH A 483 O 86.5 119.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 303 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 114 NE2 REMARK 620 2 HOH A 428 O 176.7 REMARK 620 3 HOH A 450 O 85.2 98.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 301 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 131 OD1 REMARK 620 2 ASP A 131 OD2 58.5 REMARK 620 3 ASP A 142 OD2 96.7 155.2 REMARK 620 4 GLU A 269 OE2 98.4 94.4 91.1 REMARK 620 5 HOH A 401 O 148.9 92.6 111.0 95.0 REMARK 620 6 HOH A 430 O 83.3 88.9 85.8 176.6 85.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 302 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 142 OD1 REMARK 620 2 HIS A 205 NE2 85.7 REMARK 620 3 GLU A 238 OE2 164.5 90.2 REMARK 620 4 GLU A 269 OE1 89.8 132.5 82.0 REMARK 620 5 HOH A 401 O 96.3 122.8 98.4 104.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 305 DBREF 4OOK A 1 285 UNP P0A5J2 MAP12_MYCTU 1 285 SEQADV 4OOK ALA A 284 UNP P0A5J2 CYS 284 CONFLICT SEQRES 1 A 285 MET PRO SER ARG THR ALA LEU SER PRO GLY VAL LEU SER SEQRES 2 A 285 PRO THR ARG PRO VAL PRO ASN TRP ILE ALA ARG PRO GLU SEQRES 3 A 285 TYR VAL GLY LYS PRO ALA ALA GLN GLU GLY SER GLU PRO SEQRES 4 A 285 TRP VAL GLN THR PRO GLU VAL ILE GLU LYS MET ARG VAL SEQRES 5 A 285 ALA GLY ARG ILE ALA ALA GLY ALA LEU ALA GLU ALA GLY SEQRES 6 A 285 LYS ALA VAL ALA PRO GLY VAL THR THR ASP GLU LEU ASP SEQRES 7 A 285 ARG ILE ALA HIS GLU TYR LEU VAL ASP ASN GLY ALA TYR SEQRES 8 A 285 PRO SER THR LEU GLY TYR LYS GLY PHE PRO LYS SER CYS SEQRES 9 A 285 CYS THR SER LEU ASN GLU VAL ILE CYS HIS GLY ILE PRO SEQRES 10 A 285 ASP SER THR VAL ILE THR ASP GLY ASP ILE VAL ASN ILE SEQRES 11 A 285 ASP VAL THR ALA TYR ILE GLY GLY VAL HIS GLY ASP THR SEQRES 12 A 285 ASN ALA THR PHE PRO ALA GLY ASP VAL ALA ASP GLU HIS SEQRES 13 A 285 ARG LEU LEU VAL ASP ARG THR ARG GLU ALA THR MET ARG SEQRES 14 A 285 ALA ILE ASN THR VAL LYS PRO GLY ARG ALA LEU SER VAL SEQRES 15 A 285 ILE GLY ARG VAL ILE GLU SER TYR ALA ASN ARG PHE GLY SEQRES 16 A 285 TYR ASN VAL VAL ARG ASP PHE THR GLY HIS GLY ILE GLY SEQRES 17 A 285 THR THR PHE HIS ASN GLY LEU VAL VAL LEU HIS TYR ASP SEQRES 18 A 285 GLN PRO ALA VAL GLU THR ILE MET GLN PRO GLY MET THR SEQRES 19 A 285 PHE THR ILE GLU PRO MET ILE ASN LEU GLY ALA LEU ASP SEQRES 20 A 285 TYR GLU ILE TRP ASP ASP GLY TRP THR VAL VAL THR LYS SEQRES 21 A 285 ASP ARG LYS TRP THR ALA GLN PHE GLU HIS THR LEU LEU SEQRES 22 A 285 VAL THR ASP THR GLY VAL GLU ILE LEU THR ALA LEU HET CO A 301 1 HET CO A 302 1 HET CO A 303 1 HET NA A 304 1 HET NA A 305 1 HETNAM CO COBALT (II) ION HETNAM NA SODIUM ION FORMUL 2 CO 3(CO 2+) FORMUL 5 NA 2(NA 1+) FORMUL 7 HOH *97(H2 O) HELIX 1 1 THR A 43 ALA A 67 1 25 HELIX 2 2 THR A 73 ASN A 88 1 16 HELIX 3 3 GLY A 96 PHE A 100 5 5 HELIX 4 4 ALA A 153 ASN A 172 1 20 HELIX 5 5 SER A 181 PHE A 194 1 14 SHEET 1 A 3 TYR A 91 PRO A 92 0 SHEET 2 A 3 ASP A 126 ILE A 136 -1 O TYR A 135 N TYR A 91 SHEET 3 A 3 CYS A 105 LEU A 108 -1 N SER A 107 O ASN A 129 SHEET 1 B 3 TYR A 91 PRO A 92 0 SHEET 2 B 3 ASP A 126 ILE A 136 -1 O TYR A 135 N TYR A 91 SHEET 3 B 3 VAL A 139 ALA A 149 -1 O ALA A 149 N ASP A 126 SHEET 1 C 3 VAL A 111 CYS A 113 0 SHEET 2 C 3 VAL A 257 THR A 259 -1 O VAL A 257 N CYS A 113 SHEET 3 C 3 TYR A 248 ILE A 250 -1 N GLU A 249 O VAL A 258 SHEET 1 D 3 ASN A 197 VAL A 198 0 SHEET 2 D 3 MET A 240 ASN A 242 -1 O ASN A 242 N ASN A 197 SHEET 3 D 3 THR A 265 GLN A 267 -1 O ALA A 266 N ILE A 241 SHEET 1 E 2 GLY A 204 HIS A 205 0 SHEET 2 E 2 VAL A 216 VAL A 217 -1 O VAL A 217 N GLY A 204 SHEET 1 F 3 THR A 234 ILE A 237 0 SHEET 2 F 3 HIS A 270 VAL A 274 -1 O LEU A 272 N PHE A 235 SHEET 3 F 3 VAL A 279 ILE A 281 -1 O GLU A 280 N LEU A 273 LINK O MET A 50 NA NA A 305 1555 1555 2.79 LINK O ILE A 112 NA NA A 304 1555 1555 2.78 LINK NE2 HIS A 114 CO CO A 303 1555 1555 2.25 LINK OD1 ASP A 131 CO CO A 301 1555 1555 2.07 LINK OD2 ASP A 131 CO CO A 301 1555 1555 2.34 LINK O HIS A 140 NA NA A 305 1555 1555 3.09 LINK OD2 ASP A 142 CO CO A 301 1555 1555 2.15 LINK OD1 ASP A 142 CO CO A 302 1555 1555 2.21 LINK NE2 HIS A 205 CO CO A 302 1555 1555 2.08 LINK OE2 GLU A 238 CO CO A 302 1555 1555 2.15 LINK OG1 THR A 265 NA NA A 304 1555 1555 2.71 LINK OE2 GLU A 269 CO CO A 301 1555 1555 1.99 LINK OE1 GLU A 269 CO CO A 302 1555 1555 2.00 LINK CO CO A 301 O HOH A 401 1555 1555 2.02 LINK CO CO A 301 O HOH A 430 1555 1555 2.24 LINK CO CO A 302 O HOH A 401 1555 1555 1.99 LINK CO CO A 303 O HOH A 428 1555 1555 2.20 LINK CO CO A 303 O HOH A 450 1555 1555 2.52 LINK NA NA A 304 O HOH A 483 1555 1555 2.90 SITE 1 AC1 6 ASP A 131 ASP A 142 GLU A 269 CO A 302 SITE 2 AC1 6 HOH A 401 HOH A 430 SITE 1 AC2 7 ASP A 142 HIS A 205 THR A 236 GLU A 238 SITE 2 AC2 7 GLU A 269 CO A 301 HOH A 401 SITE 1 AC3 3 HIS A 114 HOH A 428 HOH A 450 SITE 1 AC4 5 ILE A 112 MET A 240 THR A 265 ALA A 266 SITE 2 AC4 5 HOH A 483 SITE 1 AC5 3 MET A 50 HIS A 140 GLY A 141 CRYST1 49.221 48.136 56.284 90.00 95.25 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020317 0.000000 0.001865 0.00000 SCALE2 0.000000 0.020774 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017842 0.00000