HEADER TRANSFERASE/TRANSFERASE INHIBITOR 03-FEB-14 4OON TITLE CRYSTAL STRUCTURE OF PBP1A IN COMPLEX WITH COMPOUND 17 ((4Z,8S,11E, TITLE 2 14S)-5-(2-AMINO-1,3-THIAZOL-4-YL)-14-(5,6-DIHYDROXY-1,3-DIOXO-1,3- TITLE 3 DIHYDRO-2H-ISOINDOL-2-YL)-8-FORMYL-2-METHYL-6-OXO-3,10-DIOXA-4,7,11- TITLE 4 TRIAZATETRADECA-4,11-DIENE-2,12,14-TRICARBOXYLIC ACID) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PENICILLIN-BINDING PROTEIN 1A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PBP1A: UNP RESIDUES 36-822; COMPND 5 SYNONYM: PBP-1A, PBP1A, PENICILLIN-INSENSITIVE TRANSGLYCOSYLASE, COMPND 6 PEPTIDOGLYCAN TGASE, PENICILLIN-SENSITIVE TRANSPEPTIDASE, DD- COMPND 7 TRANSPEPTIDASE; COMPND 8 EC: 2.4.2.-, 3.4.-.-; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA PAO1; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228; SOURCE 5 GENE: MRCA, PONA, PA5045; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PBP1A, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.HAN,N.CASPERS,J.D.KNAFELS REVDAT 3 06-MAR-24 4OON 1 REMARK SEQADV LINK REVDAT 2 21-MAY-14 4OON 1 JRNL REVDAT 1 07-MAY-14 4OON 0 JRNL AUTH J.STARR,M.F.BROWN,L.ASCHENBRENNER,N.CASPERS,Y.CHE, JRNL AUTH 2 B.S.GERSTENBERGER,M.HUBAND,J.D.KNAFELS,M.M.LEMMON,C.LI, JRNL AUTH 3 S.P.MCCURDY,E.MCELROY,M.R.RAUCKHORST,A.P.TOMARAS,J.A.YOUNG, JRNL AUTH 4 R.P.ZANIEWSKI,V.SHANMUGASUNDARAM,S.HAN JRNL TITL SIDEROPHORE RECEPTOR-MEDIATED UPTAKE OF LACTIVICIN ANALOGUES JRNL TITL 2 IN GRAM-NEGATIVE BACTERIA. JRNL REF J.MED.CHEM. V. 57 3845 2014 JRNL REFN ISSN 0022-2623 JRNL PMID 24694215 JRNL DOI 10.1021/JM500219C REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 13898 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 693 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 7 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.46 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2811 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1952 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2649 REMARK 3 BIN R VALUE (WORKING SET) : 0.1902 REMARK 3 BIN FREE R VALUE : 0.2777 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.76 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 162 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3911 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 2 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 93.05 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 82.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 10.73620 REMARK 3 B22 (A**2) : 10.73620 REMARK 3 B33 (A**2) : -21.47240 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.555 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.903 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4045 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5481 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1396 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 95 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 596 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4045 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 518 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4818 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.21 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.08 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 20.91 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -27.8957 25.2953 1.1870 REMARK 3 T TENSOR REMARK 3 T11: -0.0930 T22: -0.0521 REMARK 3 T33: -0.1247 T12: -0.0167 REMARK 3 T13: 0.0989 T23: -0.0155 REMARK 3 L TENSOR REMARK 3 L11: 0.7094 L22: 2.1637 REMARK 3 L33: 0.7179 L12: -0.1666 REMARK 3 L13: 0.0006 L23: 0.6110 REMARK 3 S TENSOR REMARK 3 S11: -0.0499 S12: 0.0005 S13: -0.0583 REMARK 3 S21: -0.1534 S22: 0.2304 S23: -0.1612 REMARK 3 S31: -0.0356 S32: 0.0176 S33: -0.1805 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4OON COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000084756. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-AUG-12 REMARK 200 TEMPERATURE (KELVIN) : 173 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AUTOPROC, SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13985 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BUSTER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CITRATE PH 5.6, 1.2M REMARK 280 AMMONIUM PHOSPHATE, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.73000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 56.88500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 56.88500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.86500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 56.88500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 56.88500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 92.59500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 56.88500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.88500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 30.86500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 56.88500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.88500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 92.59500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 61.73000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 28 REMARK 465 SER A 29 REMARK 465 HIS A 30 REMARK 465 HIS A 31 REMARK 465 HIS A 32 REMARK 465 HIS A 33 REMARK 465 HIS A 34 REMARK 465 HIS A 35 REMARK 465 VAL A 36 REMARK 465 GLU A 37 REMARK 465 ALA A 38 REMARK 465 LEU A 39 REMARK 465 ARG A 40 REMARK 465 ASN A 41 REMARK 465 VAL A 42 REMARK 465 GLN A 43 REMARK 465 LEU A 44 REMARK 465 GLN A 45 REMARK 465 ILE A 46 REMARK 465 ARG A 65 REMARK 465 ARG A 66 REMARK 465 THR A 67 REMARK 465 PRO A 68 REMARK 465 ILE A 69 REMARK 465 ARG A 70 REMARK 465 PHE A 71 REMARK 465 ALA A 72 REMARK 465 ASP A 73 REMARK 465 ILE A 74 REMARK 465 PRO A 75 REMARK 465 GLN A 76 REMARK 465 ASP A 77 REMARK 465 PHE A 78 REMARK 465 ILE A 79 REMARK 465 HIS A 80 REMARK 465 ALA A 81 REMARK 465 LEU A 82 REMARK 465 LEU A 83 REMARK 465 SER A 84 REMARK 465 ALA A 85 REMARK 465 GLU A 86 REMARK 465 ASP A 87 REMARK 465 ASP A 88 REMARK 465 ASN A 89 REMARK 465 PHE A 90 REMARK 465 ALA A 91 REMARK 465 ASN A 92 REMARK 465 HIS A 93 REMARK 465 TYR A 94 REMARK 465 GLY A 95 REMARK 465 VAL A 96 REMARK 465 ASP A 97 REMARK 465 VAL A 98 REMARK 465 LYS A 99 REMARK 465 SER A 100 REMARK 465 LEU A 101 REMARK 465 MET A 102 REMARK 465 ARG A 103 REMARK 465 ALA A 104 REMARK 465 ALA A 105 REMARK 465 ALA A 106 REMARK 465 GLN A 107 REMARK 465 LEU A 108 REMARK 465 LEU A 109 REMARK 465 LYS A 110 REMARK 465 SER A 111 REMARK 465 GLY A 112 REMARK 465 HIS A 113 REMARK 465 ILE A 114 REMARK 465 GLN A 115 REMARK 465 THR A 116 REMARK 465 GLY A 117 REMARK 465 GLY A 118 REMARK 465 SER A 119 REMARK 465 THR A 120 REMARK 465 ILE A 121 REMARK 465 THR A 122 REMARK 465 MET A 123 REMARK 465 GLN A 124 REMARK 465 VAL A 125 REMARK 465 ALA A 126 REMARK 465 LYS A 127 REMARK 465 ASN A 128 REMARK 465 TYR A 129 REMARK 465 PHE A 130 REMARK 465 LEU A 131 REMARK 465 THR A 132 REMARK 465 ASN A 133 REMARK 465 GLU A 134 REMARK 465 ARG A 135 REMARK 465 SER A 136 REMARK 465 PHE A 137 REMARK 465 SER A 138 REMARK 465 ARG A 139 REMARK 465 LYS A 140 REMARK 465 ILE A 141 REMARK 465 ASN A 142 REMARK 465 GLU A 143 REMARK 465 ILE A 144 REMARK 465 LEU A 145 REMARK 465 LEU A 146 REMARK 465 ALA A 147 REMARK 465 LEU A 148 REMARK 465 GLN A 149 REMARK 465 ILE A 150 REMARK 465 GLU A 151 REMARK 465 ARG A 152 REMARK 465 GLN A 153 REMARK 465 LEU A 154 REMARK 465 THR A 155 REMARK 465 LYS A 156 REMARK 465 ASP A 157 REMARK 465 GLU A 158 REMARK 465 ILE A 159 REMARK 465 LEU A 160 REMARK 465 GLU A 161 REMARK 465 LEU A 162 REMARK 465 TYR A 163 REMARK 465 VAL A 164 REMARK 465 ASN A 165 REMARK 465 LYS A 166 REMARK 465 ILE A 167 REMARK 465 TYR A 168 REMARK 465 LEU A 169 REMARK 465 GLY A 170 REMARK 465 ASN A 171 REMARK 465 ARG A 172 REMARK 465 ALA A 173 REMARK 465 TYR A 174 REMARK 465 GLY A 175 REMARK 465 ILE A 176 REMARK 465 GLU A 177 REMARK 465 ALA A 178 REMARK 465 ALA A 179 REMARK 465 ALA A 180 REMARK 465 GLN A 181 REMARK 465 VAL A 182 REMARK 465 TYR A 183 REMARK 465 TYR A 184 REMARK 465 GLY A 185 REMARK 465 LYS A 186 REMARK 465 PRO A 187 REMARK 465 ILE A 188 REMARK 465 LYS A 189 REMARK 465 ASP A 190 REMARK 465 LEU A 191 REMARK 465 SER A 192 REMARK 465 LEU A 193 REMARK 465 ALA A 194 REMARK 465 GLU A 195 REMARK 465 MET A 196 REMARK 465 ALA A 197 REMARK 465 MET A 198 REMARK 465 ILE A 199 REMARK 465 ALA A 200 REMARK 465 GLY A 201 REMARK 465 LEU A 202 REMARK 465 PRO A 203 REMARK 465 LYS A 204 REMARK 465 ALA A 205 REMARK 465 PRO A 206 REMARK 465 SER A 207 REMARK 465 ARG A 208 REMARK 465 TYR A 209 REMARK 465 ASN A 210 REMARK 465 PRO A 211 REMARK 465 LEU A 212 REMARK 465 VAL A 213 REMARK 465 ASN A 214 REMARK 465 PRO A 215 REMARK 465 THR A 216 REMARK 465 ARG A 217 REMARK 465 SER A 218 REMARK 465 THR A 219 REMARK 465 GLU A 220 REMARK 465 ARG A 221 REMARK 465 ARG A 222 REMARK 465 ASN A 223 REMARK 465 TRP A 224 REMARK 465 ILE A 225 REMARK 465 LEU A 226 REMARK 465 GLU A 227 REMARK 465 ARG A 228 REMARK 465 MET A 229 REMARK 465 LEU A 230 REMARK 465 LYS A 231 REMARK 465 LEU A 232 REMARK 465 GLY A 233 REMARK 465 PHE A 234 REMARK 465 ILE A 235 REMARK 465 ASP A 236 REMARK 465 GLN A 237 REMARK 465 GLN A 238 REMARK 465 ARG A 239 REMARK 465 TYR A 240 REMARK 465 GLN A 241 REMARK 465 ALA A 242 REMARK 465 ALA A 243 REMARK 465 VAL A 244 REMARK 465 GLU A 245 REMARK 465 GLU A 246 REMARK 465 PRO A 247 REMARK 465 ILE A 248 REMARK 465 ASN A 249 REMARK 465 ALA A 250 REMARK 465 SER A 251 REMARK 465 TYR A 252 REMARK 465 HIS A 253 REMARK 465 VAL A 254 REMARK 465 GLN A 255 REMARK 465 ASP A 495 REMARK 465 LYS A 496 REMARK 465 VAL A 497 REMARK 465 TRP A 498 REMARK 465 ARG A 499 REMARK 465 PRO A 500 REMARK 465 LYS A 501 REMARK 465 ASN A 502 REMARK 465 ASP A 503 REMARK 465 THR A 504 REMARK 465 ASN A 505 REMARK 465 GLU A 610 REMARK 465 GLU A 611 REMARK 465 GLN A 612 REMARK 465 VAL A 613 REMARK 465 ALA A 614 REMARK 465 ALA A 615 REMARK 465 ASP A 616 REMARK 465 ALA A 617 REMARK 465 GLU A 618 REMARK 465 ASP A 619 REMARK 465 ALA A 620 REMARK 465 GLY A 621 REMARK 465 ASN A 622 REMARK 465 PRO A 623 REMARK 465 GLY A 624 REMARK 465 ASP A 625 REMARK 465 PRO A 626 REMARK 465 GLU A 627 REMARK 465 HIS A 628 REMARK 465 PRO A 629 REMARK 465 GLU A 630 REMARK 465 SER A 631 REMARK 465 ALA A 632 REMARK 465 GLU A 633 REMARK 465 GLY A 634 REMARK 465 GLU A 635 REMARK 465 GLY A 636 REMARK 465 SER A 637 REMARK 465 ILE A 638 REMARK 465 GLU A 639 REMARK 465 ALA A 640 REMARK 465 GLN A 641 REMARK 465 GLN A 642 REMARK 465 VAL A 643 REMARK 465 ALA A 644 REMARK 465 ALA A 645 REMARK 465 LYS A 646 REMARK 465 ALA A 647 REMARK 465 GLN A 648 REMARK 465 THR A 649 REMARK 465 THR A 650 REMARK 465 PHE A 651 REMARK 465 ASP A 793 REMARK 465 THR A 794 REMARK 465 PRO A 795 REMARK 465 PRO A 796 REMARK 465 SER A 797 REMARK 465 VAL A 798 REMARK 465 ASN A 799 REMARK 465 GLU A 800 REMARK 465 LEU A 801 REMARK 465 PRO A 802 REMARK 465 PRO A 803 REMARK 465 GLY A 804 REMARK 465 SER A 805 REMARK 465 PHE A 806 REMARK 465 PRO A 807 REMARK 465 GLY A 808 REMARK 465 SER A 809 REMARK 465 PRO A 810 REMARK 465 LEU A 811 REMARK 465 PRO A 812 REMARK 465 ASP A 813 REMARK 465 ASP A 814 REMARK 465 GLU A 815 REMARK 465 GLY A 816 REMARK 465 ALA A 817 REMARK 465 PRO A 818 REMARK 465 ILE A 819 REMARK 465 ASP A 820 REMARK 465 LEU A 821 REMARK 465 PHE A 822 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 461 O29 2U4 A 901 1.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 492 N - CA - C ANGL. DEV. = 16.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 59 -179.47 -171.13 REMARK 500 ALA A 261 59.06 -141.24 REMARK 500 THR A 282 -72.02 -75.91 REMARK 500 GLU A 283 -17.34 -42.39 REMARK 500 LEU A 323 55.48 -118.69 REMARK 500 ALA A 377 49.75 -60.30 REMARK 500 ILE A 403 -168.77 -119.30 REMARK 500 GLN A 446 -104.38 -100.09 REMARK 500 TYR A 493 -173.71 66.96 REMARK 500 PHE A 507 -165.84 -62.60 REMARK 500 LEU A 508 -59.23 103.37 REMARK 500 ARG A 553 49.56 -77.67 REMARK 500 ASN A 791 102.71 -46.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2U4 A 901 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4OOL RELATED DB: PDB REMARK 900 RELATED ID: 4OOM RELATED DB: PDB DBREF 4OON A 36 822 UNP Q07806 PBPA_PSEAE 36 822 SEQADV 4OON MET A 28 UNP Q07806 INITIATING METHIONINE SEQADV 4OON SER A 29 UNP Q07806 EXPRESSION TAG SEQADV 4OON HIS A 30 UNP Q07806 EXPRESSION TAG SEQADV 4OON HIS A 31 UNP Q07806 EXPRESSION TAG SEQADV 4OON HIS A 32 UNP Q07806 EXPRESSION TAG SEQADV 4OON HIS A 33 UNP Q07806 EXPRESSION TAG SEQADV 4OON HIS A 34 UNP Q07806 EXPRESSION TAG SEQADV 4OON HIS A 35 UNP Q07806 EXPRESSION TAG SEQRES 1 A 795 MET SER HIS HIS HIS HIS HIS HIS VAL GLU ALA LEU ARG SEQRES 2 A 795 ASN VAL GLN LEU GLN ILE PRO LEU LYS VAL TYR SER GLU SEQRES 3 A 795 ASP GLY LYS LEU ILE SER GLU PHE GLY GLU MET ARG ARG SEQRES 4 A 795 THR PRO ILE ARG PHE ALA ASP ILE PRO GLN ASP PHE ILE SEQRES 5 A 795 HIS ALA LEU LEU SER ALA GLU ASP ASP ASN PHE ALA ASN SEQRES 6 A 795 HIS TYR GLY VAL ASP VAL LYS SER LEU MET ARG ALA ALA SEQRES 7 A 795 ALA GLN LEU LEU LYS SER GLY HIS ILE GLN THR GLY GLY SEQRES 8 A 795 SER THR ILE THR MET GLN VAL ALA LYS ASN TYR PHE LEU SEQRES 9 A 795 THR ASN GLU ARG SER PHE SER ARG LYS ILE ASN GLU ILE SEQRES 10 A 795 LEU LEU ALA LEU GLN ILE GLU ARG GLN LEU THR LYS ASP SEQRES 11 A 795 GLU ILE LEU GLU LEU TYR VAL ASN LYS ILE TYR LEU GLY SEQRES 12 A 795 ASN ARG ALA TYR GLY ILE GLU ALA ALA ALA GLN VAL TYR SEQRES 13 A 795 TYR GLY LYS PRO ILE LYS ASP LEU SER LEU ALA GLU MET SEQRES 14 A 795 ALA MET ILE ALA GLY LEU PRO LYS ALA PRO SER ARG TYR SEQRES 15 A 795 ASN PRO LEU VAL ASN PRO THR ARG SER THR GLU ARG ARG SEQRES 16 A 795 ASN TRP ILE LEU GLU ARG MET LEU LYS LEU GLY PHE ILE SEQRES 17 A 795 ASP GLN GLN ARG TYR GLN ALA ALA VAL GLU GLU PRO ILE SEQRES 18 A 795 ASN ALA SER TYR HIS VAL GLN THR PRO GLU LEU ASN ALA SEQRES 19 A 795 PRO TYR ILE ALA GLU MET ALA ARG ALA GLU MET VAL GLY SEQRES 20 A 795 ARG TYR GLY SER GLU ALA TYR THR GLU GLY TYR LYS VAL SEQRES 21 A 795 ILE THR THR VAL ARG SER ASP LEU GLN ASN ALA ALA SER SEQRES 22 A 795 GLN SER VAL ARG ASP GLY LEU ILE ASP TYR ASP GLN ARG SEQRES 23 A 795 HIS GLY TYR ARG GLY PRO GLU THR ARG LEU PRO GLY GLN SEQRES 24 A 795 THR ARG ASP ALA TRP LEU LYS HIS LEU GLY GLN GLN ARG SEQRES 25 A 795 SER ILE GLY GLY LEU GLU PRO ALA ILE VAL THR GLN VAL SEQRES 26 A 795 GLU LYS SER GLY ILE MET VAL MET THR ARG ASP GLY LYS SEQRES 27 A 795 GLU GLU ALA VAL THR TRP ASP SER MET LYS TRP ALA ARG SEQRES 28 A 795 PRO PHE LEU SER ASN ASN SER MET GLY PRO MET PRO ARG SEQRES 29 A 795 GLN PRO ALA ASP VAL ALA GLN ALA GLY ASP GLN ILE ARG SEQRES 30 A 795 VAL GLN ARG GLN GLU ASP GLY THR LEU ARG PHE VAL GLN SEQRES 31 A 795 ILE PRO ALA ALA GLN SER ALA LEU ILE SER LEU ASP PRO SEQRES 32 A 795 LYS ASP GLY ALA ILE ARG SER LEU VAL GLY GLY PHE SER SEQRES 33 A 795 PHE GLU GLN SER ASN TYR ASN ARG ALA ILE GLN ALA LYS SEQRES 34 A 795 ARG GLN PRO GLY SER SER PHE LYS PRO PHE ILE TYR SER SEQRES 35 A 795 ALA ALA LEU ASP ASN GLY PHE THR ALA ALA SER LEU VAL SEQRES 36 A 795 ASN ASP ALA PRO ILE VAL PHE VAL ASP GLU TYR LEU ASP SEQRES 37 A 795 LYS VAL TRP ARG PRO LYS ASN ASP THR ASN THR PHE LEU SEQRES 38 A 795 GLY PRO ILE PRO LEU ARG GLU ALA LEU TYR LYS SER ARG SEQRES 39 A 795 ASN MET VAL SER ILE ARG VAL LEU GLN GLY LEU GLY ILE SEQRES 40 A 795 GLU ARG ALA ILE SER TYR ILE THR LYS PHE GLY PHE GLN SEQRES 41 A 795 ARG ASP GLU LEU PRO ARG ASN PHE SER LEU ALA LEU GLY SEQRES 42 A 795 THR ALA THR VAL THR PRO MET GLU ILE ALA GLY ALA TRP SEQRES 43 A 795 SER VAL PHE ALA ASN GLY GLY TYR LYS VAL ASN PRO TYR SEQRES 44 A 795 VAL ILE GLU ARG ILE GLU SER ARG ASP GLY GLN VAL LEU SEQRES 45 A 795 TYR GLN ALA ASN PRO PRO ARG VAL PRO VAL GLU GLU GLN SEQRES 46 A 795 VAL ALA ALA ASP ALA GLU ASP ALA GLY ASN PRO GLY ASP SEQRES 47 A 795 PRO GLU HIS PRO GLU SER ALA GLU GLY GLU GLY SER ILE SEQRES 48 A 795 GLU ALA GLN GLN VAL ALA ALA LYS ALA GLN THR THR PHE SEQRES 49 A 795 GLU PRO THR PRO ALA GLU ARG ILE ILE ASP ALA ARG THR SEQRES 50 A 795 ALA TYR ILE MET THR SER MET LEU GLN ASP VAL ILE LYS SEQRES 51 A 795 ARG GLY THR GLY ARG ARG ALA LEU ALA LEU LYS ARG THR SEQRES 52 A 795 ASP LEU ALA GLY LYS THR GLY THR THR ASN ASP SER LYS SEQRES 53 A 795 ASP GLY TRP PHE SER GLY TYR ASN SER ASP TYR VAL THR SEQRES 54 A 795 SER VAL TRP VAL GLY PHE ASP GLN PRO GLU THR LEU GLY SEQRES 55 A 795 ARG ARG GLU TYR GLY GLY THR VAL ALA LEU PRO ILE TRP SEQRES 56 A 795 ILE ARG TYR MET GLY PHE ALA LEU LYS ASP LYS PRO MET SEQRES 57 A 795 HIS THR MET ALA GLU PRO PRO GLY ILE VAL SER LEU ARG SEQRES 58 A 795 ILE ASP PRO VAL THR GLY ARG SER ALA ALA PRO GLY THR SEQRES 59 A 795 PRO GLY ALA TYR PHE GLU MET PHE LYS ASN GLU ASP THR SEQRES 60 A 795 PRO PRO SER VAL ASN GLU LEU PRO PRO GLY SER PHE PRO SEQRES 61 A 795 GLY SER PRO LEU PRO ASP ASP GLU GLY ALA PRO ILE ASP SEQRES 62 A 795 LEU PHE HET 2U4 A 901 46 HETNAM 2U4 (4Z,8S,11E,14S)-5-(2-AMINO-1,3-THIAZOL-4-YL)-14-(5,6- HETNAM 2 2U4 DIHYDROXY-1,3-DIOXO-1,3-DIHYDRO-2H-ISOINDOL-2-YL)-8- HETNAM 3 2U4 FORMYL-2-METHYL-6-OXO-3,10-DIOXA-4,7,11- HETNAM 4 2U4 TRIAZATETRADECA-4,11-DIENE-2,12,14-TRICARBOXYLIC ACID FORMUL 2 2U4 C25 H24 N6 O14 S FORMUL 3 HOH *2(H2 O) HELIX 1 1 ALA A 261 GLY A 277 1 17 HELIX 2 2 SER A 278 GLU A 283 1 6 HELIX 3 3 ARG A 292 ARG A 313 1 22 HELIX 4 4 THR A 327 GLN A 337 1 11 HELIX 5 5 ASP A 372 LYS A 375 5 4 HELIX 6 6 GLN A 392 ALA A 397 1 6 HELIX 7 7 PRO A 459 SER A 462 5 4 HELIX 8 8 PHE A 463 ASP A 473 1 11 HELIX 9 9 LEU A 513 LYS A 519 1 7 HELIX 10 10 ARG A 521 GLY A 533 1 13 HELIX 11 11 GLY A 533 LYS A 543 1 11 HELIX 12 12 GLN A 547 LEU A 551 5 5 HELIX 13 13 ASN A 554 GLY A 560 5 7 HELIX 14 14 THR A 565 ASN A 578 1 14 HELIX 15 15 ASP A 661 ARG A 678 1 18 HELIX 16 16 GLY A 681 LYS A 688 5 8 HELIX 17 17 ASN A 700 SER A 702 5 3 HELIX 18 18 TYR A 733 LEU A 750 1 18 SHEET 1 A 5 LEU A 57 PHE A 61 0 SHEET 2 A 5 LEU A 48 TYR A 51 -1 N VAL A 50 O SER A 59 SHEET 3 A 5 LYS A 286 THR A 289 1 O VAL A 287 N TYR A 51 SHEET 4 A 5 ILE A 588 GLU A 592 -1 O ARG A 590 N ILE A 288 SHEET 5 A 5 VAL A 598 GLN A 601 -1 O TYR A 600 N ILE A 591 SHEET 1 B 5 THR A 321 ARG A 322 0 SHEET 2 B 5 ASP A 401 ARG A 407 -1 O GLN A 402 N THR A 321 SHEET 3 B 5 LEU A 344 VAL A 352 -1 N ALA A 347 O ILE A 403 SHEET 4 B 5 GLY A 356 MET A 360 -1 O MET A 358 N THR A 350 SHEET 5 B 5 GLU A 366 THR A 370 -1 O VAL A 369 N ILE A 357 SHEET 1 C 3 THR A 321 ARG A 322 0 SHEET 2 C 3 ASP A 401 ARG A 407 -1 O GLN A 402 N THR A 321 SHEET 3 C 3 LEU A 413 VAL A 416 -1 O ARG A 414 N GLN A 406 SHEET 1 D 5 ILE A 435 VAL A 439 0 SHEET 2 D 5 GLN A 422 LEU A 428 -1 N SER A 427 O ARG A 436 SHEET 3 D 5 VAL A 715 GLY A 721 -1 O GLY A 721 N GLN A 422 SHEET 4 D 5 ASP A 704 TYR A 710 -1 N GLY A 709 O THR A 716 SHEET 5 D 5 ALA A 693 THR A 698 -1 N GLY A 697 O TRP A 706 SHEET 1 E 2 LEU A 481 ASP A 484 0 SHEET 2 E 2 GLY A 509 PRO A 512 -1 O ILE A 511 N VAL A 482 SHEET 1 F 2 ILE A 764 ILE A 769 0 SHEET 2 F 2 TYR A 785 LYS A 790 -1 O TYR A 785 N ILE A 769 LINK OG SER A 461 C25 2U4 A 901 1555 1555 1.36 CISPEP 1 LEU A 508 GLY A 509 0 -14.34 SITE 1 AC1 15 GLN A 458 SER A 461 SER A 520 ASN A 522 SITE 2 AC1 15 LEU A 559 THR A 680 THR A 696 GLY A 697 SITE 3 AC1 15 THR A 698 THR A 699 ASN A 700 ASP A 701 SITE 4 AC1 15 TYR A 733 HOH A1001 HOH A1002 CRYST1 113.770 113.770 123.460 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008790 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008790 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008100 0.00000