HEADER HYDROLASE 03-FEB-14 4OOP TITLE ARABIDOPSIS THALIANA DUTPASE WITH WITH MAGNESIUM AND ALPHA,BETA-IMIDO- TITLE 2 DUTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: DUTPASE, DUTP PYROPHOSPHATASE, DUTP-PYROPHOSPHATASE-LIKE 1, COMPND 5 ATDUT1; COMPND 6 EC: 3.6.1.23; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS,THALE-CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: DUT, DUT1, AT3G46940, T6H20.30; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DUTPASE, HYDROLYSIS, DUTP, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.INOGUCHI,M.BAJAJ,H.MORIYAMA REVDAT 3 20-SEP-23 4OOP 1 REMARK LINK REVDAT 2 06-JUL-16 4OOP 1 JRNL REVDAT 1 08-APR-15 4OOP 0 JRNL AUTH N.INOGUCHI,K.CHAISEEDA,M.YAMANISHI,M.K.KIM,Y.JANG,M.BAJAJ, JRNL AUTH 2 C.P.CHIA,D.F.BECKER,H.MORIYAMA JRNL TITL STRUCTURAL INSIGHTS INTO THE MECHANISM DEFINING SUBSTRATE JRNL TITL 2 AFFINITY IN ARABIDOPSIS THALIANA DUTPASE: THE ROLE OF JRNL TITL 3 TRYPTOPHAN 93 IN LIGAND ORIENTATION. JRNL REF BMC RES NOTES V. 8 784 2015 JRNL REFN ESSN 1756-0500 JRNL PMID 26666293 JRNL DOI 10.1186/S13104-015-1760-1 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1606) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 57348 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.400 REMARK 3 FREE R VALUE TEST SET COUNT : 1951 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.9810 - 3.6131 0.85 3750 141 0.1729 0.2024 REMARK 3 2 3.6131 - 2.8684 0.99 4202 149 0.1677 0.2083 REMARK 3 3 2.8684 - 2.5060 0.99 4153 150 0.1871 0.2290 REMARK 3 4 2.5060 - 2.2769 0.99 4142 145 0.1746 0.1983 REMARK 3 5 2.2769 - 2.1138 0.99 4117 149 0.1661 0.1941 REMARK 3 6 2.1138 - 1.9892 0.99 4111 143 0.1692 0.1887 REMARK 3 7 1.9892 - 1.8896 0.98 4048 137 0.1663 0.2027 REMARK 3 8 1.8896 - 1.8073 0.96 3947 159 0.1717 0.1963 REMARK 3 9 1.8073 - 1.7377 0.95 3945 134 0.1767 0.2434 REMARK 3 10 1.7377 - 1.6778 0.96 3945 127 0.1795 0.2240 REMARK 3 11 1.6778 - 1.6253 0.93 3808 145 0.1752 0.2191 REMARK 3 12 1.6253 - 1.5789 0.93 3807 123 0.1797 0.2102 REMARK 3 13 1.5789 - 1.5373 0.93 3791 144 0.1866 0.2534 REMARK 3 14 1.5373 - 1.4998 0.88 3631 105 0.1999 0.2404 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3169 REMARK 3 ANGLE : 1.164 4324 REMARK 3 CHIRALITY : 0.072 495 REMARK 3 PLANARITY : 0.006 546 REMARK 3 DIHEDRAL : 11.641 1143 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4OOP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000084758. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97870 REMARK 200 MONOCHROMATOR : BENT GE (111) MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59499 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 31.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 46.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.32000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ID 4OOQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 30.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 M AMMONIUM SULFATE, 0.1 M TRIS-HCL, REMARK 280 0.02 M TAURINE, 5MM DUPNHPP,5MM MAGNESIUM, PH 9, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.04450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.53200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.34000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.53200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.04450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.34000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -94.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 CYS A 3 REMARK 465 VAL A 4 REMARK 465 ASN A 5 REMARK 465 GLU A 6 REMARK 465 PRO A 7 REMARK 465 SER A 8 REMARK 465 PRO A 9 REMARK 465 LYS A 10 REMARK 465 LEU A 11 REMARK 465 GLN A 12 REMARK 465 LYS A 13 REMARK 465 LEU A 14 REMARK 465 ASP A 15 REMARK 465 ARG A 16 REMARK 465 ASN A 17 REMARK 465 GLY A 18 REMARK 465 ILE A 19 REMARK 465 HIS A 20 REMARK 465 GLY A 21 REMARK 465 ASP A 22 REMARK 465 SER A 23 REMARK 465 SER A 24 REMARK 465 ASP A 158 REMARK 465 GLY A 159 REMARK 465 GLY A 160 REMARK 465 PHE A 161 REMARK 465 GLY A 162 REMARK 465 SER A 163 REMARK 465 THR A 164 REMARK 465 GLY A 165 REMARK 465 VAL A 166 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 CYS B 3 REMARK 465 VAL B 4 REMARK 465 ASN B 5 REMARK 465 GLU B 6 REMARK 465 PRO B 7 REMARK 465 SER B 8 REMARK 465 PRO B 9 REMARK 465 LYS B 10 REMARK 465 LEU B 11 REMARK 465 GLN B 12 REMARK 465 LYS B 13 REMARK 465 LEU B 14 REMARK 465 ASP B 15 REMARK 465 ARG B 16 REMARK 465 ASN B 17 REMARK 465 GLY B 18 REMARK 465 ILE B 19 REMARK 465 HIS B 20 REMARK 465 GLY B 21 REMARK 465 ASP B 22 REMARK 465 SER B 23 REMARK 465 SER B 24 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 CYS C 3 REMARK 465 VAL C 4 REMARK 465 ASN C 5 REMARK 465 GLU C 6 REMARK 465 PRO C 7 REMARK 465 SER C 8 REMARK 465 PRO C 9 REMARK 465 LYS C 10 REMARK 465 LEU C 11 REMARK 465 GLN C 12 REMARK 465 LYS C 13 REMARK 465 LEU C 14 REMARK 465 ASP C 15 REMARK 465 ARG C 16 REMARK 465 ASN C 17 REMARK 465 GLY C 18 REMARK 465 ILE C 19 REMARK 465 HIS C 20 REMARK 465 GLY C 21 REMARK 465 ASP C 22 REMARK 465 SER C 23 REMARK 465 SER C 24 REMARK 465 PRO C 25 REMARK 465 GLU C 153 REMARK 465 THR C 154 REMARK 465 VAL C 155 REMARK 465 ARG C 156 REMARK 465 GLY C 157 REMARK 465 ASP C 158 REMARK 465 GLY C 159 REMARK 465 GLY C 160 REMARK 465 PHE C 161 REMARK 465 GLY C 162 REMARK 465 SER C 163 REMARK 465 THR C 164 REMARK 465 GLY C 165 REMARK 465 VAL C 166 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 101 -121.02 50.23 REMARK 500 HIS A 119 37.72 -96.30 REMARK 500 ALA B 101 -121.62 51.02 REMARK 500 ALA C 101 -120.23 50.19 REMARK 500 HIS C 119 47.45 -91.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DUP A 201 O1G REMARK 620 2 DUP A 201 O2A 96.7 REMARK 620 3 DUP A 201 O2B 89.9 86.9 REMARK 620 4 HOH A 447 O 94.0 88.6 174.3 REMARK 620 5 HOH B 366 O 89.3 173.5 90.6 93.5 REMARK 620 6 HOH B 463 O 175.0 88.1 89.0 87.4 85.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 323 O REMARK 620 2 HOH A 393 O 87.0 REMARK 620 3 DUP B 203 O1G 175.4 88.4 REMARK 620 4 DUP B 203 O2A 89.5 173.5 95.1 REMARK 620 5 DUP B 203 O2B 90.8 97.1 89.4 88.4 REMARK 620 6 HOH B 405 O 86.8 90.3 93.5 84.1 172.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DUP B 202 O2A REMARK 620 2 DUP B 202 O2B 87.6 REMARK 620 3 DUP B 202 O1G 93.4 88.0 REMARK 620 4 HOH B 408 O 87.5 92.7 178.9 REMARK 620 5 HOH B 464 O 85.2 172.6 94.0 85.4 REMARK 620 6 HOH C 339 O 177.6 94.5 87.9 91.2 92.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DUP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DUP B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DUP B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4OOQ RELATED DB: PDB DBREF 4OOP A 1 166 UNP Q9STG6 DUT_ARATH 1 166 DBREF 4OOP B 1 166 UNP Q9STG6 DUT_ARATH 1 166 DBREF 4OOP C 1 166 UNP Q9STG6 DUT_ARATH 1 166 SEQRES 1 A 166 MET ALA CYS VAL ASN GLU PRO SER PRO LYS LEU GLN LYS SEQRES 2 A 166 LEU ASP ARG ASN GLY ILE HIS GLY ASP SER SER PRO SER SEQRES 3 A 166 PRO PHE PHE LYS VAL LYS LYS LEU SER GLU LYS ALA VAL SEQRES 4 A 166 ILE PRO THR ARG GLY SER PRO LEU SER ALA GLY TYR ASP SEQRES 5 A 166 LEU SER SER ALA VAL ASP SER LYS VAL PRO ALA ARG GLY SEQRES 6 A 166 LYS ALA LEU ILE PRO THR ASP LEU SER ILE ALA VAL PRO SEQRES 7 A 166 GLU GLY THR TYR ALA ARG ILE ALA PRO ARG SER GLY LEU SEQRES 8 A 166 ALA TRP LYS HIS SER ILE ASP VAL GLY ALA GLY VAL ILE SEQRES 9 A 166 ASP ALA ASP TYR ARG GLY PRO VAL GLY VAL ILE LEU PHE SEQRES 10 A 166 ASN HIS SER ASP ALA ASP PHE GLU VAL LYS PHE GLY ASP SEQRES 11 A 166 ARG ILE ALA GLN LEU ILE ILE GLU LYS ILE VAL THR PRO SEQRES 12 A 166 ASP VAL VAL GLU VAL ASP ASP LEU ASP GLU THR VAL ARG SEQRES 13 A 166 GLY ASP GLY GLY PHE GLY SER THR GLY VAL SEQRES 1 B 166 MET ALA CYS VAL ASN GLU PRO SER PRO LYS LEU GLN LYS SEQRES 2 B 166 LEU ASP ARG ASN GLY ILE HIS GLY ASP SER SER PRO SER SEQRES 3 B 166 PRO PHE PHE LYS VAL LYS LYS LEU SER GLU LYS ALA VAL SEQRES 4 B 166 ILE PRO THR ARG GLY SER PRO LEU SER ALA GLY TYR ASP SEQRES 5 B 166 LEU SER SER ALA VAL ASP SER LYS VAL PRO ALA ARG GLY SEQRES 6 B 166 LYS ALA LEU ILE PRO THR ASP LEU SER ILE ALA VAL PRO SEQRES 7 B 166 GLU GLY THR TYR ALA ARG ILE ALA PRO ARG SER GLY LEU SEQRES 8 B 166 ALA TRP LYS HIS SER ILE ASP VAL GLY ALA GLY VAL ILE SEQRES 9 B 166 ASP ALA ASP TYR ARG GLY PRO VAL GLY VAL ILE LEU PHE SEQRES 10 B 166 ASN HIS SER ASP ALA ASP PHE GLU VAL LYS PHE GLY ASP SEQRES 11 B 166 ARG ILE ALA GLN LEU ILE ILE GLU LYS ILE VAL THR PRO SEQRES 12 B 166 ASP VAL VAL GLU VAL ASP ASP LEU ASP GLU THR VAL ARG SEQRES 13 B 166 GLY ASP GLY GLY PHE GLY SER THR GLY VAL SEQRES 1 C 166 MET ALA CYS VAL ASN GLU PRO SER PRO LYS LEU GLN LYS SEQRES 2 C 166 LEU ASP ARG ASN GLY ILE HIS GLY ASP SER SER PRO SER SEQRES 3 C 166 PRO PHE PHE LYS VAL LYS LYS LEU SER GLU LYS ALA VAL SEQRES 4 C 166 ILE PRO THR ARG GLY SER PRO LEU SER ALA GLY TYR ASP SEQRES 5 C 166 LEU SER SER ALA VAL ASP SER LYS VAL PRO ALA ARG GLY SEQRES 6 C 166 LYS ALA LEU ILE PRO THR ASP LEU SER ILE ALA VAL PRO SEQRES 7 C 166 GLU GLY THR TYR ALA ARG ILE ALA PRO ARG SER GLY LEU SEQRES 8 C 166 ALA TRP LYS HIS SER ILE ASP VAL GLY ALA GLY VAL ILE SEQRES 9 C 166 ASP ALA ASP TYR ARG GLY PRO VAL GLY VAL ILE LEU PHE SEQRES 10 C 166 ASN HIS SER ASP ALA ASP PHE GLU VAL LYS PHE GLY ASP SEQRES 11 C 166 ARG ILE ALA GLN LEU ILE ILE GLU LYS ILE VAL THR PRO SEQRES 12 C 166 ASP VAL VAL GLU VAL ASP ASP LEU ASP GLU THR VAL ARG SEQRES 13 C 166 GLY ASP GLY GLY PHE GLY SER THR GLY VAL HET DUP A 201 28 HET MG A 202 1 HET MG B 201 1 HET DUP B 202 28 HET DUP B 203 28 HET MG C 201 1 HETNAM DUP 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 4 DUP 3(C9 H16 N3 O13 P3) FORMUL 5 MG 3(MG 2+) FORMUL 10 HOH *552(H2 O) HELIX 1 1 ARG A 88 SER A 96 1 9 HELIX 2 2 ARG B 88 SER B 96 1 9 HELIX 3 3 ARG C 88 SER C 96 1 9 SHEET 1 A 3 LEU A 73 ALA A 76 0 SHEET 2 A 3 LYS A 30 LYS A 33 -1 N LYS A 32 O SER A 74 SHEET 3 A 3 VAL C 146 GLU C 147 1 O VAL C 146 N VAL A 31 SHEET 1 B 6 VAL C 103 ILE C 104 0 SHEET 2 B 6 THR C 81 ALA C 86 -1 N ALA C 83 O ILE C 104 SHEET 3 B 6 ARG C 131 VAL C 141 -1 O ILE C 136 N ARG C 84 SHEET 4 B 6 ARG B 131 VAL B 141 -1 N LYS B 139 O LYS C 139 SHEET 5 B 6 GLY B 50 SER B 54 -1 N TYR B 51 O LEU B 135 SHEET 6 B 6 THR B 42 ARG B 43 -1 N THR B 42 O ASP B 52 SHEET 1 C 6 THR A 42 ARG A 43 0 SHEET 2 C 6 TYR A 51 SER A 54 -1 O ASP A 52 N THR A 42 SHEET 3 C 6 ARG A 131 VAL A 141 -1 O LEU A 135 N TYR A 51 SHEET 4 C 6 ARG B 131 VAL B 141 -1 O LYS B 139 N LYS A 139 SHEET 5 C 6 THR B 81 ALA B 86 -1 N ARG B 84 O ILE B 136 SHEET 6 C 6 VAL B 103 ILE B 104 -1 O ILE B 104 N ALA B 83 SHEET 1 D 6 THR C 42 ARG C 43 0 SHEET 2 D 6 TYR C 51 SER C 54 -1 O ASP C 52 N THR C 42 SHEET 3 D 6 ARG C 131 VAL C 141 -1 O LEU C 135 N TYR C 51 SHEET 4 D 6 ARG A 131 VAL A 141 -1 N LYS A 139 O LYS C 139 SHEET 5 D 6 THR A 81 ALA A 86 -1 N ARG A 84 O ILE A 136 SHEET 6 D 6 VAL A 103 ILE A 104 -1 O ILE A 104 N ALA A 83 SHEET 1 E 2 SER A 59 VAL A 61 0 SHEET 2 E 2 PHE A 124 VAL A 126 -1 O VAL A 126 N SER A 59 SHEET 1 F 3 LYS A 66 PRO A 70 0 SHEET 2 F 3 GLY A 113 ASN A 118 -1 O VAL A 114 N ILE A 69 SHEET 3 F 3 ILE A 97 GLY A 100 -1 N ASP A 98 O PHE A 117 SHEET 1 G 3 VAL A 145 GLU A 147 0 SHEET 2 G 3 PHE B 29 LYS B 33 1 O VAL B 31 N VAL A 146 SHEET 3 G 3 LEU B 73 ALA B 76 -1 O SER B 74 N LYS B 32 SHEET 1 H 2 SER B 59 VAL B 61 0 SHEET 2 H 2 PHE B 124 VAL B 126 -1 O VAL B 126 N SER B 59 SHEET 1 I 3 LYS B 66 PRO B 70 0 SHEET 2 I 3 GLY B 113 ASN B 118 -1 O VAL B 114 N ILE B 69 SHEET 3 I 3 ILE B 97 GLY B 100 -1 N ASP B 98 O PHE B 117 SHEET 1 J 3 VAL B 145 GLU B 147 0 SHEET 2 J 3 PHE C 29 LYS C 33 1 O PHE C 29 N VAL B 146 SHEET 3 J 3 LEU C 73 ALA C 76 -1 O SER C 74 N LYS C 32 SHEET 1 K 2 SER C 59 VAL C 61 0 SHEET 2 K 2 PHE C 124 VAL C 126 -1 O VAL C 126 N SER C 59 SHEET 1 L 3 LYS C 66 PRO C 70 0 SHEET 2 L 3 GLY C 113 ASN C 118 -1 O VAL C 114 N ILE C 69 SHEET 3 L 3 ILE C 97 GLY C 100 -1 N ASP C 98 O PHE C 117 LINK O1G DUP A 201 MG MG B 201 1555 1555 1.96 LINK O2A DUP A 201 MG MG B 201 1555 1555 2.07 LINK O2B DUP A 201 MG MG B 201 1555 1555 2.11 LINK MG MG A 202 O HOH A 323 1555 1555 2.06 LINK MG MG A 202 O HOH A 393 1555 1555 2.04 LINK MG MG A 202 O1G DUP B 203 1555 1555 2.08 LINK MG MG A 202 O2A DUP B 203 1555 1555 2.01 LINK MG MG A 202 O2B DUP B 203 1555 1555 2.07 LINK MG MG A 202 O HOH B 405 1555 1555 2.13 LINK O HOH A 447 MG MG B 201 1555 1555 1.95 LINK MG MG B 201 O HOH B 366 1555 1555 2.12 LINK MG MG B 201 O HOH B 463 1555 1555 2.04 LINK O2A DUP B 202 MG MG C 201 1555 1555 2.06 LINK O2B DUP B 202 MG MG C 201 1555 1555 2.06 LINK O1G DUP B 202 MG MG C 201 1555 1555 2.09 LINK O HOH B 408 MG MG C 201 1555 1555 2.02 LINK O HOH B 464 MG MG C 201 1555 1555 2.02 LINK MG MG C 201 O HOH C 339 1555 1555 2.09 SITE 1 AC1 26 ALA A 101 GLY A 102 VAL A 103 ILE A 104 SITE 2 AC1 26 ASP A 105 TYR A 108 PRO A 111 GLY A 113 SITE 3 AC1 26 HOH A 303 HOH A 308 HOH A 318 HOH A 361 SITE 4 AC1 26 HOH A 395 HOH A 406 HOH A 410 HOH A 415 SITE 5 AC1 26 HOH A 423 HOH A 447 HOH A 449 ARG B 88 SITE 6 AC1 26 SER B 89 GLY B 90 GLN B 134 MG B 201 SITE 7 AC1 26 HOH B 366 HOH B 463 SITE 1 AC2 4 HOH A 323 HOH A 393 DUP B 203 HOH B 405 SITE 1 AC3 4 DUP A 201 HOH A 447 HOH B 366 HOH B 463 SITE 1 AC4 22 ARG A 156 ALA B 101 GLY B 102 VAL B 103 SITE 2 AC4 22 ILE B 104 ASP B 105 TYR B 108 GLY B 113 SITE 3 AC4 22 HOH B 301 HOH B 325 HOH B 382 HOH B 408 SITE 4 AC4 22 HOH B 413 HOH B 451 HOH B 464 HOH B 505 SITE 5 AC4 22 ARG C 88 SER C 89 GLY C 90 GLN C 134 SITE 6 AC4 22 MG C 201 HOH C 339 SITE 1 AC5 25 ARG A 88 SER A 89 GLY A 90 GLN A 134 SITE 2 AC5 25 MG A 202 HOH A 323 HOH A 393 ARG B 156 SITE 3 AC5 25 GLY B 160 PHE B 161 GLY B 162 SER B 163 SITE 4 AC5 25 THR B 164 HOH B 303 HOH B 307 HOH B 320 SITE 5 AC5 25 HOH B 349 HOH B 405 ILE C 85 ALA C 101 SITE 6 AC5 25 GLY C 102 VAL C 103 ASP C 105 TYR C 108 SITE 7 AC5 25 GLY C 113 SITE 1 AC6 4 DUP B 202 HOH B 408 HOH B 464 HOH C 339 CRYST1 70.089 70.680 75.064 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014268 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014148 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013322 0.00000