data_4OPK # _entry.id 4OPK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4OPK pdb_00004opk 10.2210/pdb4opk/pdb NDB NA2908 ? ? RCSB RCSB084789 ? ? WWPDB D_1000084789 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4OPJ _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4OPK _pdbx_database_status.recvd_initial_deposition_date 2014-02-05 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pallan, P.S.' 1 'Egli, M.' 2 # _citation.id primary _citation.title 'Generating Crystallographic Models of DNA Dodecamers from Structures of RNase H:DNA Complexes.' _citation.journal_abbrev 'Methods Mol.Biol.' _citation.journal_volume 1320 _citation.page_first 111 _citation.page_last 126 _citation.year ? _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1064-3745 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 26227040 _citation.pdbx_database_id_DOI 10.1007/978-1-4939-2763-0_8 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Egli, M.' 1 ? primary 'Pallan, P.S.' 2 ? # _cell.entry_id 4OPK _cell.length_a 98.138 _cell.length_b 66.609 _cell.length_c 77.898 _cell.angle_alpha 90.00 _cell.angle_beta 122.05 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4OPK _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ribonuclease H' 16329.478 2 3.1.26.4 D132N 'UNP residues 59-196' ? 2 polymer syn "5'-D(*CP*GP*CP*GP*AP*AP*(USM)P*TP*CP*GP*CP*G)-3'" 3695.457 2 ? ? ? ;2'-SMe-uridine DNA ; 3 non-polymer syn GLYCEROL 92.094 2 ? ? ? ? 4 water nat water 18.015 196 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'RNase H' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GSHMAKEEIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSRKPIYSNSQ TAIKWVKDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKADYGRK ; ;GSHMAKEEIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSRKPIYSNSQ TAIKWVKDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKADYGRK ; A,C ? 2 polydeoxyribonucleotide no yes '(DC)(DG)(DC)(DG)(DA)(DA)(USM)(DT)(DC)(DG)(DC)(DG)' CGCGAAUTCGCG B,D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 ALA n 1 6 LYS n 1 7 GLU n 1 8 GLU n 1 9 ILE n 1 10 ILE n 1 11 TRP n 1 12 GLU n 1 13 SER n 1 14 LEU n 1 15 SER n 1 16 VAL n 1 17 ASP n 1 18 VAL n 1 19 GLY n 1 20 SER n 1 21 GLN n 1 22 GLY n 1 23 ASN n 1 24 PRO n 1 25 GLY n 1 26 ILE n 1 27 VAL n 1 28 GLU n 1 29 TYR n 1 30 LYS n 1 31 GLY n 1 32 VAL n 1 33 ASP n 1 34 THR n 1 35 LYS n 1 36 THR n 1 37 GLY n 1 38 GLU n 1 39 VAL n 1 40 LEU n 1 41 PHE n 1 42 GLU n 1 43 ARG n 1 44 GLU n 1 45 PRO n 1 46 ILE n 1 47 PRO n 1 48 ILE n 1 49 GLY n 1 50 THR n 1 51 ASN n 1 52 ASN n 1 53 MET n 1 54 GLY n 1 55 GLU n 1 56 PHE n 1 57 LEU n 1 58 ALA n 1 59 ILE n 1 60 VAL n 1 61 HIS n 1 62 GLY n 1 63 LEU n 1 64 ARG n 1 65 TYR n 1 66 LEU n 1 67 LYS n 1 68 GLU n 1 69 ARG n 1 70 ASN n 1 71 SER n 1 72 ARG n 1 73 LYS n 1 74 PRO n 1 75 ILE n 1 76 TYR n 1 77 SER n 1 78 ASN n 1 79 SER n 1 80 GLN n 1 81 THR n 1 82 ALA n 1 83 ILE n 1 84 LYS n 1 85 TRP n 1 86 VAL n 1 87 LYS n 1 88 ASP n 1 89 LYS n 1 90 LYS n 1 91 ALA n 1 92 LYS n 1 93 SER n 1 94 THR n 1 95 LEU n 1 96 VAL n 1 97 ARG n 1 98 ASN n 1 99 GLU n 1 100 GLU n 1 101 THR n 1 102 ALA n 1 103 LEU n 1 104 ILE n 1 105 TRP n 1 106 LYS n 1 107 LEU n 1 108 VAL n 1 109 ASP n 1 110 GLU n 1 111 ALA n 1 112 GLU n 1 113 GLU n 1 114 TRP n 1 115 LEU n 1 116 ASN n 1 117 THR n 1 118 HIS n 1 119 THR n 1 120 TYR n 1 121 GLU n 1 122 THR n 1 123 PRO n 1 124 ILE n 1 125 LEU n 1 126 LYS n 1 127 TRP n 1 128 GLN n 1 129 THR n 1 130 ASP n 1 131 LYS n 1 132 TRP n 1 133 GLY n 1 134 GLU n 1 135 ILE n 1 136 LYS n 1 137 ALA n 1 138 ASP n 1 139 TYR n 1 140 GLY n 1 141 ARG n 1 142 LYS n 2 1 DC n 2 2 DG n 2 3 DC n 2 4 DG n 2 5 DA n 2 6 DA n 2 7 USM n 2 8 DT n 2 9 DC n 2 10 DG n 2 11 DC n 2 12 DG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BH0863, rnhA' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus halodurans' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 86665 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET15b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP RNH1_BACHD Q9KEI9 1 ;AKEEIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSRKPIYSDSQTAIK WVKDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKADYGRK ; 59 ? 2 PDB 4OPK 4OPK 2 'CGCGAA(USM)TCGCG' 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4OPK A 5 ? 142 ? Q9KEI9 59 ? 196 ? 59 196 2 1 4OPK C 5 ? 142 ? Q9KEI9 59 ? 196 ? 59 196 3 2 4OPK B 1 ? 12 ? 4OPK 1 ? 12 ? 1 12 4 2 4OPK D 1 ? 12 ? 4OPK 1 ? 12 ? 1 12 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4OPK GLY A 1 ? UNP Q9KEI9 ? ? 'expression tag' 55 1 1 4OPK SER A 2 ? UNP Q9KEI9 ? ? 'expression tag' 56 2 1 4OPK HIS A 3 ? UNP Q9KEI9 ? ? 'expression tag' 57 3 1 4OPK MET A 4 ? UNP Q9KEI9 ? ? 'expression tag' 58 4 1 4OPK ASN A 78 ? UNP Q9KEI9 ASP 132 'engineered mutation' 132 5 2 4OPK GLY C 1 ? UNP Q9KEI9 ? ? 'expression tag' 55 6 2 4OPK SER C 2 ? UNP Q9KEI9 ? ? 'expression tag' 56 7 2 4OPK HIS C 3 ? UNP Q9KEI9 ? ? 'expression tag' 57 8 2 4OPK MET C 4 ? UNP Q9KEI9 ? ? 'expression tag' 58 9 2 4OPK ASN C 78 ? UNP Q9KEI9 ASP 132 'engineered mutation' 132 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 USM 'DNA linking' n ;2'-S-methyl-2'-thiouridine 5'-(dihydrogen phosphate) ; ? 'C10 H15 N2 O8 P S' 354.273 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4OPK _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.69 _exptl_crystal.density_percent_sol 54.34 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pdbx_details '0.1 M sodium acetate, 8% w/v PEG4000, pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2007-10-21 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.00 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 21-ID-D' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 21-ID-D _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.00 # _reflns.entry_id 4OPK _reflns.observed_criterion_sigma_I 5.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 66.024 _reflns.d_resolution_high 1.539 _reflns.number_obs 59362 _reflns.number_all 59362 _reflns.percent_possible_obs 94.2 _reflns.pdbx_Rmerge_I_obs 0.047 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 28.3 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 2.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.539 _reflns_shell.d_res_low 1.57 _reflns_shell.percent_possible_all 91.8 _reflns_shell.Rmerge_I_obs 0.675 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.27 _reflns_shell.pdbx_redundancy 2.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2885 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4OPK _refine.ls_number_reflns_obs 54674 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I 5.0 _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 66.02 _refine.ls_d_res_high 1.539 _refine.ls_percent_reflns_obs 93.96 _refine.ls_R_factor_obs 0.19893 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.19390 _refine.ls_R_factor_R_free 0.25820 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 7.8 _refine.ls_number_reflns_R_free 4611 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.963 _refine.correlation_coeff_Fo_to_Fc_free 0.941 _refine.B_iso_mean 32.586 _refine.aniso_B[1][1] -0.73 _refine.aniso_B[2][2] -0.78 _refine.aniso_B[3][3] 1.36 _refine.aniso_B[1][2] -0.00 _refine.aniso_B[1][3] -0.74 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 3D0P' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.099 _refine.pdbx_overall_ESU_R_Free 0.096 _refine.overall_SU_ML 0.076 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 5.019 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2156 _refine_hist.pdbx_number_atoms_nucleic_acid 488 _refine_hist.pdbx_number_atoms_ligand 12 _refine_hist.number_atoms_solvent 196 _refine_hist.number_atoms_total 2852 _refine_hist.d_res_high 1.539 _refine_hist.d_res_low 66.02 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' r_bond_refined_d 2800 0.023 0.018 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 3896 2.324 1.837 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 268 6.036 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 105 35.028 25.238 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 414 17.010 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 10 21.528 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 410 0.196 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1920 0.015 0.021 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 1065 4.910 2.817 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 1331 5.361 4.215 ? ? 'X-RAY DIFFRACTION' r_scbond_it 1735 6.304 3.334 ? ? 'X-RAY DIFFRACTION' r_rigid_bond_restr 2800 10.060 3.000 ? ? 'X-RAY DIFFRACTION' r_sphericity_free 92 27.589 5.000 ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded 2796 19.488 5.000 ? ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.539 _refine_ls_shell.d_res_low 1.579 _refine_ls_shell.number_reflns_R_work 3920 _refine_ls_shell.R_factor_R_work 0.349 _refine_ls_shell.percent_reflns_obs 90.66 _refine_ls_shell.R_factor_R_free 0.348 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 314 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4OPK _struct.title ;Bh-RNaseH:2'-SMe-DNA complex ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4OPK _struct_keywords.pdbx_keywords HYDROLASE/DNA _struct_keywords.text ;Bh RNase-H:DNA complex, protein-DNA complex, RNase H, Ribonuclease H, 2'thiomethyl DNA, HYDROLASE-DNA complex ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 50 ? ARG A 69 ? THR A 104 ARG A 123 1 ? 20 HELX_P HELX_P2 2 SER A 79 ? LYS A 89 ? SER A 133 LYS A 143 1 ? 11 HELX_P HELX_P3 3 THR A 101 ? HIS A 118 ? THR A 155 HIS A 172 1 ? 18 HELX_P HELX_P4 4 GLN A 128 ? GLY A 133 ? GLN A 182 GLY A 187 1 ? 6 HELX_P HELX_P5 5 THR C 50 ? ARG C 69 ? THR C 104 ARG C 123 1 ? 20 HELX_P HELX_P6 6 SER C 79 ? LYS C 89 ? SER C 133 LYS C 143 1 ? 11 HELX_P HELX_P7 7 THR C 101 ? HIS C 118 ? THR C 155 HIS C 172 1 ? 18 HELX_P HELX_P8 8 GLN C 128 ? GLY C 133 ? GLN C 182 GLY C 187 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B DA 6 "O3'" ? ? ? 1_555 B USM 7 P ? ? B DA 6 B USM 7 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale2 covale both ? B USM 7 "O3'" ? ? ? 1_555 B DT 8 P ? ? B USM 7 B DT 8 1_555 ? ? ? ? ? ? ? 1.565 ? ? covale3 covale both ? D DA 6 "O3'" ? ? ? 1_555 D USM 7 P ? ? D DA 6 D USM 7 1_555 ? ? ? ? ? ? ? 1.586 ? ? covale4 covale both ? D USM 7 "O3'" ? ? ? 1_555 D DT 8 P ? ? D USM 7 D DT 8 1_555 ? ? ? ? ? ? ? 1.604 ? ? hydrog1 hydrog ? ? D DC 1 N3 ? ? ? 1_555 D DG 12 N1 ? ? D DC 1 D DG 12 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? D DC 1 N4 ? ? ? 1_555 D DG 12 O6 ? ? D DC 1 D DG 12 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? D DC 1 O2 ? ? ? 1_555 D DG 12 N2 ? ? D DC 1 D DG 12 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? D DG 2 N1 ? ? ? 1_555 D DC 11 N3 ? ? D DG 2 D DC 11 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? D DG 2 N2 ? ? ? 1_555 D DC 11 O2 ? ? D DG 2 D DC 11 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? D DG 2 O6 ? ? ? 1_555 D DC 11 N4 ? ? D DG 2 D DC 11 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? D DC 3 N3 ? ? ? 1_555 D DG 10 N1 ? ? D DC 3 D DG 10 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? D DC 3 N4 ? ? ? 1_555 D DG 10 O6 ? ? D DC 3 D DG 10 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? D DC 3 O2 ? ? ? 1_555 D DG 10 N2 ? ? D DC 3 D DG 10 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? D DG 4 N1 ? ? ? 1_555 D DC 9 N3 ? ? D DG 4 D DC 9 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? D DG 4 N2 ? ? ? 1_555 D DC 9 O2 ? ? D DG 4 D DC 9 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? D DG 4 O6 ? ? ? 1_555 D DC 9 N4 ? ? D DG 4 D DC 9 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? D DA 5 N1 ? ? ? 1_555 D DT 8 N3 ? ? D DA 5 D DT 8 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? D DA 5 N6 ? ? ? 1_555 D DT 8 O4 ? ? D DA 5 D DT 8 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? D DA 6 N1 ? ? ? 1_555 D USM 7 N3 ? ? D DA 6 D USM 7 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? D DA 6 N6 ? ? ? 1_555 D USM 7 O4 ? ? D DA 6 D USM 7 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? D USM 7 N3 ? ? ? 1_555 D DA 6 N1 ? ? D USM 7 D DA 6 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? D USM 7 O4 ? ? ? 1_555 D DA 6 N6 ? ? D USM 7 D DA 6 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? D DT 8 N3 ? ? ? 1_555 D DA 5 N1 ? ? D DT 8 D DA 5 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? D DT 8 O4 ? ? ? 1_555 D DA 5 N6 ? ? D DT 8 D DA 5 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? D DC 9 N3 ? ? ? 1_555 D DG 4 N1 ? ? D DC 9 D DG 4 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? D DC 9 N4 ? ? ? 1_555 D DG 4 O6 ? ? D DC 9 D DG 4 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? D DC 9 O2 ? ? ? 1_555 D DG 4 N2 ? ? D DC 9 D DG 4 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? D DG 10 N1 ? ? ? 1_555 D DC 3 N3 ? ? D DG 10 D DC 3 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? D DG 10 N2 ? ? ? 1_555 D DC 3 O2 ? ? D DG 10 D DC 3 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? D DG 10 O6 ? ? ? 1_555 D DC 3 N4 ? ? D DG 10 D DC 3 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? D DC 11 N3 ? ? ? 1_555 D DG 2 N1 ? ? D DC 11 D DG 2 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? D DC 11 N4 ? ? ? 1_555 D DG 2 O6 ? ? D DC 11 D DG 2 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? D DC 11 O2 ? ? ? 1_555 D DG 2 N2 ? ? D DC 11 D DG 2 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? D DG 12 N1 ? ? ? 1_555 D DC 1 N3 ? ? D DG 12 D DC 1 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? D DG 12 N2 ? ? ? 1_555 D DC 1 O2 ? ? D DG 12 D DC 1 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? D DG 12 O6 ? ? ? 1_555 D DC 1 N4 ? ? D DG 12 D DC 1 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ASN 23 A . ? ASN 77 A PRO 24 A ? PRO 78 A 1 8.82 2 TYR 139 A . ? TYR 193 A GLY 140 A ? GLY 194 A 1 -0.73 3 ASN 23 C . ? ASN 77 C PRO 24 C ? PRO 78 C 1 5.10 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel B 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 39 ? GLY A 49 ? VAL A 93 GLY A 103 A 2 GLY A 25 ? ASP A 33 ? GLY A 79 ASP A 87 A 3 LEU A 14 ? GLN A 21 ? LEU A 68 GLN A 75 A 4 ILE A 75 ? SER A 77 ? ILE A 129 SER A 131 A 5 ILE A 124 ? LYS A 126 ? ILE A 178 LYS A 180 B 1 VAL C 39 ? GLY C 49 ? VAL C 93 GLY C 103 B 2 GLY C 25 ? ASP C 33 ? GLY C 79 ASP C 87 B 3 LEU C 14 ? SER C 20 ? LEU C 68 SER C 74 B 4 ILE C 75 ? SER C 77 ? ILE C 129 SER C 131 B 5 ILE C 124 ? LYS C 126 ? ILE C 178 LYS C 180 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ILE A 46 ? O ILE A 100 N VAL A 27 ? N VAL A 81 A 2 3 O LYS A 30 ? O LYS A 84 N ASP A 17 ? N ASP A 71 A 3 4 N LEU A 14 ? N LEU A 68 O TYR A 76 ? O TYR A 130 A 4 5 N ILE A 75 ? N ILE A 129 O LEU A 125 ? O LEU A 179 B 1 2 O LEU C 40 ? O LEU C 94 N GLY C 31 ? N GLY C 85 B 2 3 O VAL C 32 ? O VAL C 86 N SER C 15 ? N SER C 69 B 3 4 N LEU C 14 ? N LEU C 68 O TYR C 76 ? O TYR C 130 B 4 5 N ILE C 75 ? N ILE C 129 O LEU C 125 ? O LEU C 179 # _database_PDB_matrix.entry_id 4OPK _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4OPK _atom_sites.fract_transf_matrix[1][1] 0.010190 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.006380 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015013 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015146 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 55 ? ? ? A . n A 1 2 SER 2 56 ? ? ? A . n A 1 3 HIS 3 57 ? ? ? A . n A 1 4 MET 4 58 ? ? ? A . n A 1 5 ALA 5 59 ? ? ? A . n A 1 6 LYS 6 60 ? ? ? A . n A 1 7 GLU 7 61 ? ? ? A . n A 1 8 GLU 8 62 62 GLU GLU A . n A 1 9 ILE 9 63 63 ILE ILE A . n A 1 10 ILE 10 64 64 ILE ILE A . n A 1 11 TRP 11 65 65 TRP TRP A . n A 1 12 GLU 12 66 66 GLU GLU A . n A 1 13 SER 13 67 67 SER SER A . n A 1 14 LEU 14 68 68 LEU LEU A . n A 1 15 SER 15 69 69 SER SER A . n A 1 16 VAL 16 70 70 VAL VAL A . n A 1 17 ASP 17 71 71 ASP ASP A . n A 1 18 VAL 18 72 72 VAL VAL A . n A 1 19 GLY 19 73 73 GLY GLY A . n A 1 20 SER 20 74 74 SER SER A . n A 1 21 GLN 21 75 75 GLN GLN A . n A 1 22 GLY 22 76 76 GLY GLY A . n A 1 23 ASN 23 77 77 ASN ASN A . n A 1 24 PRO 24 78 78 PRO PRO A . n A 1 25 GLY 25 79 79 GLY GLY A . n A 1 26 ILE 26 80 80 ILE ILE A . n A 1 27 VAL 27 81 81 VAL VAL A . n A 1 28 GLU 28 82 82 GLU GLU A . n A 1 29 TYR 29 83 83 TYR TYR A . n A 1 30 LYS 30 84 84 LYS LYS A . n A 1 31 GLY 31 85 85 GLY GLY A . n A 1 32 VAL 32 86 86 VAL VAL A . n A 1 33 ASP 33 87 87 ASP ASP A . n A 1 34 THR 34 88 88 THR THR A . n A 1 35 LYS 35 89 89 LYS LYS A . n A 1 36 THR 36 90 90 THR THR A . n A 1 37 GLY 37 91 91 GLY GLY A . n A 1 38 GLU 38 92 92 GLU GLU A . n A 1 39 VAL 39 93 93 VAL VAL A . n A 1 40 LEU 40 94 94 LEU LEU A . n A 1 41 PHE 41 95 95 PHE PHE A . n A 1 42 GLU 42 96 96 GLU GLU A . n A 1 43 ARG 43 97 97 ARG ARG A . n A 1 44 GLU 44 98 98 GLU GLU A . n A 1 45 PRO 45 99 99 PRO PRO A . n A 1 46 ILE 46 100 100 ILE ILE A . n A 1 47 PRO 47 101 101 PRO PRO A . n A 1 48 ILE 48 102 102 ILE ILE A . n A 1 49 GLY 49 103 103 GLY GLY A . n A 1 50 THR 50 104 104 THR THR A . n A 1 51 ASN 51 105 105 ASN ASN A . n A 1 52 ASN 52 106 106 ASN ASN A . n A 1 53 MET 53 107 107 MET MET A . n A 1 54 GLY 54 108 108 GLY GLY A . n A 1 55 GLU 55 109 109 GLU GLU A . n A 1 56 PHE 56 110 110 PHE PHE A . n A 1 57 LEU 57 111 111 LEU LEU A . n A 1 58 ALA 58 112 112 ALA ALA A . n A 1 59 ILE 59 113 113 ILE ILE A . n A 1 60 VAL 60 114 114 VAL VAL A . n A 1 61 HIS 61 115 115 HIS HIS A . n A 1 62 GLY 62 116 116 GLY GLY A . n A 1 63 LEU 63 117 117 LEU LEU A . n A 1 64 ARG 64 118 118 ARG ARG A . n A 1 65 TYR 65 119 119 TYR TYR A . n A 1 66 LEU 66 120 120 LEU LEU A . n A 1 67 LYS 67 121 121 LYS LYS A . n A 1 68 GLU 68 122 122 GLU GLU A . n A 1 69 ARG 69 123 123 ARG ARG A . n A 1 70 ASN 70 124 124 ASN ASN A . n A 1 71 SER 71 125 125 SER SER A . n A 1 72 ARG 72 126 126 ARG ARG A . n A 1 73 LYS 73 127 127 LYS LYS A . n A 1 74 PRO 74 128 128 PRO PRO A . n A 1 75 ILE 75 129 129 ILE ILE A . n A 1 76 TYR 76 130 130 TYR TYR A . n A 1 77 SER 77 131 131 SER SER A . n A 1 78 ASN 78 132 132 ASN ASN A . n A 1 79 SER 79 133 133 SER SER A . n A 1 80 GLN 80 134 134 GLN GLN A . n A 1 81 THR 81 135 135 THR THR A . n A 1 82 ALA 82 136 136 ALA ALA A . n A 1 83 ILE 83 137 137 ILE ILE A . n A 1 84 LYS 84 138 138 LYS LYS A . n A 1 85 TRP 85 139 139 TRP TRP A . n A 1 86 VAL 86 140 140 VAL VAL A . n A 1 87 LYS 87 141 141 LYS LYS A . n A 1 88 ASP 88 142 142 ASP ASP A . n A 1 89 LYS 89 143 143 LYS LYS A . n A 1 90 LYS 90 144 144 LYS LYS A . n A 1 91 ALA 91 145 145 ALA ALA A . n A 1 92 LYS 92 146 146 LYS LYS A . n A 1 93 SER 93 147 147 SER SER A . n A 1 94 THR 94 148 148 THR THR A . n A 1 95 LEU 95 149 149 LEU LEU A . n A 1 96 VAL 96 150 150 VAL VAL A . n A 1 97 ARG 97 151 151 ARG ARG A . n A 1 98 ASN 98 152 152 ASN ASN A . n A 1 99 GLU 99 153 153 GLU GLU A . n A 1 100 GLU 100 154 154 GLU GLU A . n A 1 101 THR 101 155 155 THR THR A . n A 1 102 ALA 102 156 156 ALA ALA A . n A 1 103 LEU 103 157 157 LEU LEU A . n A 1 104 ILE 104 158 158 ILE ILE A . n A 1 105 TRP 105 159 159 TRP TRP A . n A 1 106 LYS 106 160 160 LYS LYS A . n A 1 107 LEU 107 161 161 LEU LEU A . n A 1 108 VAL 108 162 162 VAL VAL A . n A 1 109 ASP 109 163 163 ASP ASP A . n A 1 110 GLU 110 164 164 GLU GLU A . n A 1 111 ALA 111 165 165 ALA ALA A . n A 1 112 GLU 112 166 166 GLU GLU A . n A 1 113 GLU 113 167 167 GLU GLU A . n A 1 114 TRP 114 168 168 TRP TRP A . n A 1 115 LEU 115 169 169 LEU LEU A . n A 1 116 ASN 116 170 170 ASN ASN A . n A 1 117 THR 117 171 171 THR THR A . n A 1 118 HIS 118 172 172 HIS HIS A . n A 1 119 THR 119 173 173 THR THR A . n A 1 120 TYR 120 174 174 TYR TYR A . n A 1 121 GLU 121 175 175 GLU GLU A . n A 1 122 THR 122 176 176 THR THR A . n A 1 123 PRO 123 177 177 PRO PRO A . n A 1 124 ILE 124 178 178 ILE ILE A . n A 1 125 LEU 125 179 179 LEU LEU A . n A 1 126 LYS 126 180 180 LYS LYS A . n A 1 127 TRP 127 181 181 TRP TRP A . n A 1 128 GLN 128 182 182 GLN GLN A . n A 1 129 THR 129 183 183 THR THR A . n A 1 130 ASP 130 184 184 ASP ASP A . n A 1 131 LYS 131 185 185 LYS LYS A . n A 1 132 TRP 132 186 186 TRP TRP A . n A 1 133 GLY 133 187 187 GLY GLY A . n A 1 134 GLU 134 188 188 GLU GLU A . n A 1 135 ILE 135 189 189 ILE ILE A . n A 1 136 LYS 136 190 190 LYS LYS A . n A 1 137 ALA 137 191 191 ALA ALA A . n A 1 138 ASP 138 192 192 ASP ASP A . n A 1 139 TYR 139 193 193 TYR TYR A . n A 1 140 GLY 140 194 194 GLY GLY A . n A 1 141 ARG 141 195 ? ? ? A . n A 1 142 LYS 142 196 ? ? ? A . n B 2 1 DC 1 1 1 DC DC B . n B 2 2 DG 2 2 2 DG DG B . n B 2 3 DC 3 3 3 DC DC B . n B 2 4 DG 4 4 4 DG DG B . n B 2 5 DA 5 5 5 DA DA B . n B 2 6 DA 6 6 6 DA DA B . n B 2 7 USM 7 7 7 USM USM B . n B 2 8 DT 8 8 8 DT DT B . n B 2 9 DC 9 9 9 DC DC B . n B 2 10 DG 10 10 10 DG DG B . n B 2 11 DC 11 11 11 DC DC B . n B 2 12 DG 12 12 12 DG DG B . n C 1 1 GLY 1 55 ? ? ? C . n C 1 2 SER 2 56 ? ? ? C . n C 1 3 HIS 3 57 ? ? ? C . n C 1 4 MET 4 58 ? ? ? C . n C 1 5 ALA 5 59 ? ? ? C . n C 1 6 LYS 6 60 ? ? ? C . n C 1 7 GLU 7 61 ? ? ? C . n C 1 8 GLU 8 62 62 GLU GLU C . n C 1 9 ILE 9 63 63 ILE ILE C . n C 1 10 ILE 10 64 64 ILE ILE C . n C 1 11 TRP 11 65 65 TRP TRP C . n C 1 12 GLU 12 66 66 GLU GLU C . n C 1 13 SER 13 67 67 SER SER C . n C 1 14 LEU 14 68 68 LEU LEU C . n C 1 15 SER 15 69 69 SER SER C . n C 1 16 VAL 16 70 70 VAL VAL C . n C 1 17 ASP 17 71 71 ASP ASP C . n C 1 18 VAL 18 72 72 VAL VAL C . n C 1 19 GLY 19 73 73 GLY GLY C . n C 1 20 SER 20 74 74 SER SER C . n C 1 21 GLN 21 75 75 GLN GLN C . n C 1 22 GLY 22 76 76 GLY GLY C . n C 1 23 ASN 23 77 77 ASN ASN C . n C 1 24 PRO 24 78 78 PRO PRO C . n C 1 25 GLY 25 79 79 GLY GLY C . n C 1 26 ILE 26 80 80 ILE ILE C . n C 1 27 VAL 27 81 81 VAL VAL C . n C 1 28 GLU 28 82 82 GLU GLU C . n C 1 29 TYR 29 83 83 TYR TYR C . n C 1 30 LYS 30 84 84 LYS LYS C . n C 1 31 GLY 31 85 85 GLY GLY C . n C 1 32 VAL 32 86 86 VAL VAL C . n C 1 33 ASP 33 87 87 ASP ASP C . n C 1 34 THR 34 88 88 THR THR C . n C 1 35 LYS 35 89 89 LYS LYS C . n C 1 36 THR 36 90 90 THR THR C . n C 1 37 GLY 37 91 91 GLY GLY C . n C 1 38 GLU 38 92 92 GLU GLU C . n C 1 39 VAL 39 93 93 VAL VAL C . n C 1 40 LEU 40 94 94 LEU LEU C . n C 1 41 PHE 41 95 95 PHE PHE C . n C 1 42 GLU 42 96 96 GLU GLU C . n C 1 43 ARG 43 97 97 ARG ARG C . n C 1 44 GLU 44 98 98 GLU GLU C . n C 1 45 PRO 45 99 99 PRO PRO C . n C 1 46 ILE 46 100 100 ILE ILE C . n C 1 47 PRO 47 101 101 PRO PRO C . n C 1 48 ILE 48 102 102 ILE ILE C . n C 1 49 GLY 49 103 103 GLY GLY C . n C 1 50 THR 50 104 104 THR THR C . n C 1 51 ASN 51 105 105 ASN ASN C . n C 1 52 ASN 52 106 106 ASN ASN C . n C 1 53 MET 53 107 107 MET MET C . n C 1 54 GLY 54 108 108 GLY GLY C . n C 1 55 GLU 55 109 109 GLU GLU C . n C 1 56 PHE 56 110 110 PHE PHE C . n C 1 57 LEU 57 111 111 LEU LEU C . n C 1 58 ALA 58 112 112 ALA ALA C . n C 1 59 ILE 59 113 113 ILE ILE C . n C 1 60 VAL 60 114 114 VAL VAL C . n C 1 61 HIS 61 115 115 HIS HIS C . n C 1 62 GLY 62 116 116 GLY GLY C . n C 1 63 LEU 63 117 117 LEU LEU C . n C 1 64 ARG 64 118 118 ARG ARG C . n C 1 65 TYR 65 119 119 TYR TYR C . n C 1 66 LEU 66 120 120 LEU LEU C . n C 1 67 LYS 67 121 121 LYS LYS C . n C 1 68 GLU 68 122 122 GLU GLU C . n C 1 69 ARG 69 123 123 ARG ARG C . n C 1 70 ASN 70 124 124 ASN ASN C . n C 1 71 SER 71 125 125 SER SER C . n C 1 72 ARG 72 126 126 ARG ARG C . n C 1 73 LYS 73 127 127 LYS LYS C . n C 1 74 PRO 74 128 128 PRO PRO C . n C 1 75 ILE 75 129 129 ILE ILE C . n C 1 76 TYR 76 130 130 TYR TYR C . n C 1 77 SER 77 131 131 SER SER C . n C 1 78 ASN 78 132 132 ASN ASN C . n C 1 79 SER 79 133 133 SER SER C . n C 1 80 GLN 80 134 134 GLN GLN C . n C 1 81 THR 81 135 135 THR THR C . n C 1 82 ALA 82 136 136 ALA ALA C . n C 1 83 ILE 83 137 137 ILE ILE C . n C 1 84 LYS 84 138 138 LYS LYS C . n C 1 85 TRP 85 139 139 TRP TRP C . n C 1 86 VAL 86 140 140 VAL VAL C . n C 1 87 LYS 87 141 141 LYS LYS C . n C 1 88 ASP 88 142 142 ASP ASP C . n C 1 89 LYS 89 143 143 LYS LYS C . n C 1 90 LYS 90 144 144 LYS LYS C . n C 1 91 ALA 91 145 145 ALA ALA C . n C 1 92 LYS 92 146 146 LYS LYS C . n C 1 93 SER 93 147 147 SER SER C . n C 1 94 THR 94 148 148 THR THR C . n C 1 95 LEU 95 149 149 LEU LEU C . n C 1 96 VAL 96 150 150 VAL VAL C . n C 1 97 ARG 97 151 151 ARG ARG C . n C 1 98 ASN 98 152 152 ASN ASN C . n C 1 99 GLU 99 153 153 GLU GLU C . n C 1 100 GLU 100 154 154 GLU GLU C . n C 1 101 THR 101 155 155 THR THR C . n C 1 102 ALA 102 156 156 ALA ALA C . n C 1 103 LEU 103 157 157 LEU LEU C . n C 1 104 ILE 104 158 158 ILE ILE C . n C 1 105 TRP 105 159 159 TRP TRP C . n C 1 106 LYS 106 160 160 LYS LYS C . n C 1 107 LEU 107 161 161 LEU LEU C . n C 1 108 VAL 108 162 162 VAL VAL C . n C 1 109 ASP 109 163 163 ASP ASP C . n C 1 110 GLU 110 164 164 GLU GLU C . n C 1 111 ALA 111 165 165 ALA ALA C . n C 1 112 GLU 112 166 166 GLU GLU C . n C 1 113 GLU 113 167 167 GLU GLU C . n C 1 114 TRP 114 168 168 TRP TRP C . n C 1 115 LEU 115 169 169 LEU LEU C . n C 1 116 ASN 116 170 170 ASN ASN C . n C 1 117 THR 117 171 171 THR THR C . n C 1 118 HIS 118 172 172 HIS HIS C . n C 1 119 THR 119 173 173 THR THR C . n C 1 120 TYR 120 174 174 TYR TYR C . n C 1 121 GLU 121 175 175 GLU GLU C . n C 1 122 THR 122 176 176 THR THR C . n C 1 123 PRO 123 177 177 PRO PRO C . n C 1 124 ILE 124 178 178 ILE ILE C . n C 1 125 LEU 125 179 179 LEU LEU C . n C 1 126 LYS 126 180 180 LYS LYS C . n C 1 127 TRP 127 181 181 TRP TRP C . n C 1 128 GLN 128 182 182 GLN GLN C . n C 1 129 THR 129 183 183 THR THR C . n C 1 130 ASP 130 184 184 ASP ASP C . n C 1 131 LYS 131 185 185 LYS LYS C . n C 1 132 TRP 132 186 186 TRP TRP C . n C 1 133 GLY 133 187 187 GLY GLY C . n C 1 134 GLU 134 188 188 GLU GLU C . n C 1 135 ILE 135 189 189 ILE ILE C . n C 1 136 LYS 136 190 190 LYS LYS C . n C 1 137 ALA 137 191 191 ALA ALA C . n C 1 138 ASP 138 192 192 ASP ASP C . n C 1 139 TYR 139 193 193 TYR TYR C . n C 1 140 GLY 140 194 194 GLY GLY C . n C 1 141 ARG 141 195 ? ? ? C . n C 1 142 LYS 142 196 ? ? ? C . n D 2 1 DC 1 1 1 DC DC D . n D 2 2 DG 2 2 2 DG DG D . n D 2 3 DC 3 3 3 DC DC D . n D 2 4 DG 4 4 4 DG DG D . n D 2 5 DA 5 5 5 DA DA D . n D 2 6 DA 6 6 6 DA DA D . n D 2 7 USM 7 7 7 USM USM D . n D 2 8 DT 8 8 8 DT DT D . n D 2 9 DC 9 9 9 DC DC D . n D 2 10 DG 10 10 10 DG DG D . n D 2 11 DC 11 11 11 DC DC D . n D 2 12 DG 12 12 12 DG DG D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL 1 201 302 GOL GOL A . F 3 GOL 1 301 301 GOL GOL C . G 4 HOH 1 301 1 HOH HOH A . G 4 HOH 2 302 2 HOH HOH A . G 4 HOH 3 303 3 HOH HOH A . G 4 HOH 4 304 4 HOH HOH A . G 4 HOH 5 305 5 HOH HOH A . G 4 HOH 6 306 6 HOH HOH A . G 4 HOH 7 307 8 HOH HOH A . G 4 HOH 8 308 9 HOH HOH A . G 4 HOH 9 309 10 HOH HOH A . G 4 HOH 10 310 11 HOH HOH A . G 4 HOH 11 311 12 HOH HOH A . G 4 HOH 12 312 13 HOH HOH A . G 4 HOH 13 313 14 HOH HOH A . G 4 HOH 14 314 15 HOH HOH A . G 4 HOH 15 315 16 HOH HOH A . G 4 HOH 16 316 17 HOH HOH A . G 4 HOH 17 317 18 HOH HOH A . G 4 HOH 18 318 19 HOH HOH A . G 4 HOH 19 319 20 HOH HOH A . G 4 HOH 20 320 21 HOH HOH A . G 4 HOH 21 321 22 HOH HOH A . G 4 HOH 22 322 25 HOH HOH A . G 4 HOH 23 323 26 HOH HOH A . G 4 HOH 24 324 27 HOH HOH A . G 4 HOH 25 325 28 HOH HOH A . G 4 HOH 26 326 29 HOH HOH A . G 4 HOH 27 327 31 HOH HOH A . G 4 HOH 28 328 32 HOH HOH A . G 4 HOH 29 329 42 HOH HOH A . G 4 HOH 30 330 43 HOH HOH A . G 4 HOH 31 331 54 HOH HOH A . G 4 HOH 32 332 61 HOH HOH A . G 4 HOH 33 333 62 HOH HOH A . G 4 HOH 34 334 63 HOH HOH A . G 4 HOH 35 335 65 HOH HOH A . G 4 HOH 36 336 66 HOH HOH A . G 4 HOH 37 337 67 HOH HOH A . G 4 HOH 38 338 68 HOH HOH A . G 4 HOH 39 339 69 HOH HOH A . G 4 HOH 40 340 70 HOH HOH A . G 4 HOH 41 341 107 HOH HOH A . G 4 HOH 42 342 109 HOH HOH A . G 4 HOH 43 343 110 HOH HOH A . G 4 HOH 44 344 124 HOH HOH A . G 4 HOH 45 345 125 HOH HOH A . G 4 HOH 46 346 130 HOH HOH A . G 4 HOH 47 347 131 HOH HOH A . G 4 HOH 48 348 132 HOH HOH A . G 4 HOH 49 349 133 HOH HOH A . G 4 HOH 50 350 134 HOH HOH A . G 4 HOH 51 351 135 HOH HOH A . G 4 HOH 52 352 137 HOH HOH A . G 4 HOH 53 353 138 HOH HOH A . G 4 HOH 54 354 158 HOH HOH A . G 4 HOH 55 355 159 HOH HOH A . G 4 HOH 56 356 163 HOH HOH A . G 4 HOH 57 357 164 HOH HOH A . G 4 HOH 58 358 165 HOH HOH A . G 4 HOH 59 359 166 HOH HOH A . G 4 HOH 60 360 169 HOH HOH A . G 4 HOH 61 361 170 HOH HOH A . G 4 HOH 62 362 171 HOH HOH A . G 4 HOH 63 363 180 HOH HOH A . G 4 HOH 64 364 194 HOH HOH A . G 4 HOH 65 365 195 HOH HOH A . G 4 HOH 66 366 201 HOH HOH A . G 4 HOH 67 367 202 HOH HOH A . G 4 HOH 68 368 203 HOH HOH A . G 4 HOH 69 369 204 HOH HOH A . H 4 HOH 1 101 24 HOH HOH B . H 4 HOH 2 102 30 HOH HOH B . H 4 HOH 3 103 71 HOH HOH B . H 4 HOH 4 104 72 HOH HOH B . H 4 HOH 5 105 73 HOH HOH B . H 4 HOH 6 106 74 HOH HOH B . H 4 HOH 7 107 75 HOH HOH B . H 4 HOH 8 108 76 HOH HOH B . H 4 HOH 9 109 77 HOH HOH B . H 4 HOH 10 110 78 HOH HOH B . H 4 HOH 11 111 80 HOH HOH B . H 4 HOH 12 112 81 HOH HOH B . H 4 HOH 13 113 82 HOH HOH B . H 4 HOH 14 114 83 HOH HOH B . H 4 HOH 15 115 84 HOH HOH B . H 4 HOH 16 116 85 HOH HOH B . H 4 HOH 17 117 86 HOH HOH B . H 4 HOH 18 118 87 HOH HOH B . H 4 HOH 19 119 108 HOH HOH B . H 4 HOH 20 120 126 HOH HOH B . H 4 HOH 21 121 127 HOH HOH B . H 4 HOH 22 122 128 HOH HOH B . H 4 HOH 23 123 139 HOH HOH B . H 4 HOH 24 124 140 HOH HOH B . H 4 HOH 25 125 141 HOH HOH B . H 4 HOH 26 126 142 HOH HOH B . H 4 HOH 27 127 143 HOH HOH B . H 4 HOH 28 128 144 HOH HOH B . H 4 HOH 29 129 198 HOH HOH B . H 4 HOH 30 130 199 HOH HOH B . H 4 HOH 31 131 200 HOH HOH B . I 4 HOH 1 401 33 HOH HOH C . I 4 HOH 2 402 34 HOH HOH C . I 4 HOH 3 403 35 HOH HOH C . I 4 HOH 4 404 36 HOH HOH C . I 4 HOH 5 405 38 HOH HOH C . I 4 HOH 6 406 39 HOH HOH C . I 4 HOH 7 407 40 HOH HOH C . I 4 HOH 8 408 41 HOH HOH C . I 4 HOH 9 409 44 HOH HOH C . I 4 HOH 10 410 45 HOH HOH C . I 4 HOH 11 411 46 HOH HOH C . I 4 HOH 12 412 47 HOH HOH C . I 4 HOH 13 413 48 HOH HOH C . I 4 HOH 14 414 49 HOH HOH C . I 4 HOH 15 415 50 HOH HOH C . I 4 HOH 16 416 51 HOH HOH C . I 4 HOH 17 417 52 HOH HOH C . I 4 HOH 18 418 53 HOH HOH C . I 4 HOH 19 419 55 HOH HOH C . I 4 HOH 20 420 56 HOH HOH C . I 4 HOH 21 421 57 HOH HOH C . I 4 HOH 22 422 58 HOH HOH C . I 4 HOH 23 423 64 HOH HOH C . I 4 HOH 24 424 88 HOH HOH C . I 4 HOH 25 425 89 HOH HOH C . I 4 HOH 26 426 90 HOH HOH C . I 4 HOH 27 427 91 HOH HOH C . I 4 HOH 28 428 92 HOH HOH C . I 4 HOH 29 429 93 HOH HOH C . I 4 HOH 30 430 94 HOH HOH C . I 4 HOH 31 431 96 HOH HOH C . I 4 HOH 32 432 97 HOH HOH C . I 4 HOH 33 433 98 HOH HOH C . I 4 HOH 34 434 99 HOH HOH C . I 4 HOH 35 435 100 HOH HOH C . I 4 HOH 36 436 101 HOH HOH C . I 4 HOH 37 437 102 HOH HOH C . I 4 HOH 38 438 105 HOH HOH C . I 4 HOH 39 439 111 HOH HOH C . I 4 HOH 40 440 112 HOH HOH C . I 4 HOH 41 441 114 HOH HOH C . I 4 HOH 42 442 115 HOH HOH C . I 4 HOH 43 443 116 HOH HOH C . I 4 HOH 44 444 117 HOH HOH C . I 4 HOH 45 445 118 HOH HOH C . I 4 HOH 46 446 129 HOH HOH C . I 4 HOH 47 447 136 HOH HOH C . I 4 HOH 48 448 145 HOH HOH C . I 4 HOH 49 449 146 HOH HOH C . I 4 HOH 50 450 147 HOH HOH C . I 4 HOH 51 451 149 HOH HOH C . I 4 HOH 52 452 150 HOH HOH C . I 4 HOH 53 453 151 HOH HOH C . I 4 HOH 54 454 152 HOH HOH C . I 4 HOH 55 455 155 HOH HOH C . I 4 HOH 56 456 157 HOH HOH C . I 4 HOH 57 457 161 HOH HOH C . I 4 HOH 58 458 167 HOH HOH C . I 4 HOH 59 459 168 HOH HOH C . I 4 HOH 60 460 173 HOH HOH C . I 4 HOH 61 461 174 HOH HOH C . I 4 HOH 62 462 175 HOH HOH C . I 4 HOH 63 463 176 HOH HOH C . I 4 HOH 64 464 178 HOH HOH C . I 4 HOH 65 465 179 HOH HOH C . I 4 HOH 66 466 181 HOH HOH C . I 4 HOH 67 467 182 HOH HOH C . I 4 HOH 68 468 183 HOH HOH C . I 4 HOH 69 469 184 HOH HOH C . I 4 HOH 70 470 185 HOH HOH C . I 4 HOH 71 471 186 HOH HOH C . I 4 HOH 72 472 187 HOH HOH C . I 4 HOH 73 473 188 HOH HOH C . I 4 HOH 74 474 189 HOH HOH C . I 4 HOH 75 475 190 HOH HOH C . I 4 HOH 76 476 191 HOH HOH C . I 4 HOH 77 477 196 HOH HOH C . I 4 HOH 78 478 205 HOH HOH C . J 4 HOH 1 101 59 HOH HOH D . J 4 HOH 2 102 60 HOH HOH D . J 4 HOH 3 103 103 HOH HOH D . J 4 HOH 4 104 104 HOH HOH D . J 4 HOH 5 105 106 HOH HOH D . J 4 HOH 6 106 113 HOH HOH D . J 4 HOH 7 107 119 HOH HOH D . J 4 HOH 8 108 120 HOH HOH D . J 4 HOH 9 109 121 HOH HOH D . J 4 HOH 10 110 122 HOH HOH D . J 4 HOH 11 111 153 HOH HOH D . J 4 HOH 12 112 154 HOH HOH D . J 4 HOH 13 113 160 HOH HOH D . J 4 HOH 14 114 162 HOH HOH D . J 4 HOH 15 115 172 HOH HOH D . J 4 HOH 16 116 177 HOH HOH D . J 4 HOH 17 117 192 HOH HOH D . J 4 HOH 18 118 193 HOH HOH D . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 B USM 7 B USM 7 ? DU ? 2 D USM 7 D USM 7 ? DU ? # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? trimeric 3 2 author_defined_assembly ? trimeric 3 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 B,H 1 2 A,B,E,G,H 2 3 D,J 2 2 C,D,F,I,J # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'crystal symmetry operation' 2_555 -x,y,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 2 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 56.8007155637 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 66.0252021536 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-02-11 2 'Structure model' 1 1 2015-08-12 3 'Structure model' 1 2 2023-09-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_conn 6 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MD2 'data collection' 'diffractometer software from EMBL (with LS-CAT developed extensions)' ? 1 MOLREP phasing . ? 2 REFMAC refinement 5.8.0049 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OE1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLU _pdbx_validate_close_contact.auth_seq_id_1 109 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 B _pdbx_validate_close_contact.auth_atom_id_2 CB _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 SER _pdbx_validate_close_contact.auth_seq_id_2 133 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.06 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CG A TYR 83 ? ? CD1 A TYR 83 ? ? 1.469 1.387 0.082 0.013 N 2 1 CB A ASN 105 ? ? CG A ASN 105 ? A 1.684 1.506 0.178 0.023 N 3 1 CA A SER 131 ? ? CB A SER 131 ? ? 1.623 1.525 0.098 0.015 N 4 1 CG A TRP 139 ? ? CD1 A TRP 139 ? ? 1.452 1.363 0.089 0.014 N 5 1 C5 B DT 8 ? ? C6 B DT 8 ? ? 1.387 1.339 0.048 0.007 N 6 1 CB C SER 67 ? ? OG C SER 67 ? ? 1.497 1.418 0.079 0.013 N 7 1 CG C TRP 139 ? ? CD1 C TRP 139 ? ? 1.449 1.363 0.086 0.014 N 8 1 CB C TRP 159 ? ? CG C TRP 159 ? ? 1.687 1.498 0.189 0.018 N 9 1 "O3'" D DC 3 ? ? P D DG 4 ? ? 1.525 1.607 -0.082 0.012 Y 10 1 C6 D DT 8 ? ? N1 D DT 8 ? ? 1.335 1.378 -0.043 0.007 N 11 1 C2 D DT 8 ? ? O2 D DT 8 ? ? 1.277 1.220 0.057 0.008 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A LEU 117 ? ? CG A LEU 117 ? ? CD1 A LEU 117 ? ? 123.58 111.00 12.58 1.70 N 2 1 "O5'" B DC 3 ? ? P B DC 3 ? ? OP2 B DC 3 ? ? 95.76 105.70 -9.94 0.90 N 3 1 "O4'" B DT 8 ? ? "C1'" B DT 8 ? ? N1 B DT 8 ? ? 112.72 108.30 4.42 0.30 N 4 1 N1 B DT 8 ? ? C2 B DT 8 ? ? N3 B DT 8 ? ? 118.45 114.60 3.85 0.60 N 5 1 N3 B DT 8 ? ? C4 B DT 8 ? ? O4 B DT 8 ? ? 124.31 119.90 4.41 0.60 N 6 1 C5 B DT 8 ? ? C4 B DT 8 ? ? O4 B DT 8 ? ? 119.34 124.90 -5.56 0.70 N 7 1 "O4'" D DC 1 ? ? "C1'" D DC 1 ? ? "C2'" D DC 1 ? ? 110.07 106.80 3.27 0.50 N 8 1 "O5'" D DG 2 ? A P D DG 2 ? A OP1 D DG 2 ? A 118.20 110.70 7.50 1.20 N 9 1 "C3'" D DG 4 ? ? "O3'" D DG 4 ? ? P D DA 5 ? ? 127.12 119.70 7.42 1.20 Y 10 1 "O4'" D DT 8 ? ? "C1'" D DT 8 ? ? N1 D DT 8 ? ? 110.73 108.30 2.43 0.30 N 11 1 C2 D DT 8 ? ? N3 D DT 8 ? ? C4 D DT 8 ? ? 122.88 127.20 -4.32 0.60 N 12 1 N3 D DT 8 ? ? C4 D DT 8 ? ? C5 D DT 8 ? ? 121.21 115.20 6.01 0.60 N 13 1 C4 D DT 8 ? ? C5 D DT 8 ? ? C6 D DT 8 ? ? 113.61 118.00 -4.39 0.60 N 14 1 C5 D DT 8 ? ? C4 D DT 8 ? ? O4 D DT 8 ? ? 115.28 124.90 -9.62 0.70 N 15 1 "O5'" D DG 10 ? ? P D DG 10 ? ? OP2 D DG 10 ? ? 100.19 105.70 -5.51 0.90 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id GLN _pdbx_validate_torsion.auth_asym_id C _pdbx_validate_torsion.auth_seq_id 75 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -107.29 _pdbx_validate_torsion.psi -82.27 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLY 194 ? C ? A GLY 140 C 2 1 Y 1 A GLY 194 ? O ? A GLY 140 O 3 1 Y 1 C GLY 194 ? C ? C GLY 140 C 4 1 Y 1 C GLY 194 ? O ? C GLY 140 O # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 55 ? A GLY 1 2 1 Y 1 A SER 56 ? A SER 2 3 1 Y 1 A HIS 57 ? A HIS 3 4 1 Y 1 A MET 58 ? A MET 4 5 1 Y 1 A ALA 59 ? A ALA 5 6 1 Y 1 A LYS 60 ? A LYS 6 7 1 Y 1 A GLU 61 ? A GLU 7 8 1 Y 1 A ARG 195 ? A ARG 141 9 1 Y 1 A LYS 196 ? A LYS 142 10 1 Y 1 C GLY 55 ? C GLY 1 11 1 Y 1 C SER 56 ? C SER 2 12 1 Y 1 C HIS 57 ? C HIS 3 13 1 Y 1 C MET 58 ? C MET 4 14 1 Y 1 C ALA 59 ? C ALA 5 15 1 Y 1 C LYS 60 ? C LYS 6 16 1 Y 1 C GLU 61 ? C GLU 7 17 1 Y 1 C ARG 195 ? C ARG 141 18 1 Y 1 C LYS 196 ? C LYS 142 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 DA OP3 O N N 74 DA P P N N 75 DA OP1 O N N 76 DA OP2 O N N 77 DA "O5'" O N N 78 DA "C5'" C N N 79 DA "C4'" C N R 80 DA "O4'" O N N 81 DA "C3'" C N S 82 DA "O3'" O N N 83 DA "C2'" C N N 84 DA "C1'" C N R 85 DA N9 N Y N 86 DA C8 C Y N 87 DA N7 N Y N 88 DA C5 C Y N 89 DA C6 C Y N 90 DA N6 N N N 91 DA N1 N Y N 92 DA C2 C Y N 93 DA N3 N Y N 94 DA C4 C Y N 95 DA HOP3 H N N 96 DA HOP2 H N N 97 DA "H5'" H N N 98 DA "H5''" H N N 99 DA "H4'" H N N 100 DA "H3'" H N N 101 DA "HO3'" H N N 102 DA "H2'" H N N 103 DA "H2''" H N N 104 DA "H1'" H N N 105 DA H8 H N N 106 DA H61 H N N 107 DA H62 H N N 108 DA H2 H N N 109 DC OP3 O N N 110 DC P P N N 111 DC OP1 O N N 112 DC OP2 O N N 113 DC "O5'" O N N 114 DC "C5'" C N N 115 DC "C4'" C N R 116 DC "O4'" O N N 117 DC "C3'" C N S 118 DC "O3'" O N N 119 DC "C2'" C N N 120 DC "C1'" C N R 121 DC N1 N N N 122 DC C2 C N N 123 DC O2 O N N 124 DC N3 N N N 125 DC C4 C N N 126 DC N4 N N N 127 DC C5 C N N 128 DC C6 C N N 129 DC HOP3 H N N 130 DC HOP2 H N N 131 DC "H5'" H N N 132 DC "H5''" H N N 133 DC "H4'" H N N 134 DC "H3'" H N N 135 DC "HO3'" H N N 136 DC "H2'" H N N 137 DC "H2''" H N N 138 DC "H1'" H N N 139 DC H41 H N N 140 DC H42 H N N 141 DC H5 H N N 142 DC H6 H N N 143 DG OP3 O N N 144 DG P P N N 145 DG OP1 O N N 146 DG OP2 O N N 147 DG "O5'" O N N 148 DG "C5'" C N N 149 DG "C4'" C N R 150 DG "O4'" O N N 151 DG "C3'" C N S 152 DG "O3'" O N N 153 DG "C2'" C N N 154 DG "C1'" C N R 155 DG N9 N Y N 156 DG C8 C Y N 157 DG N7 N Y N 158 DG C5 C Y N 159 DG C6 C N N 160 DG O6 O N N 161 DG N1 N N N 162 DG C2 C N N 163 DG N2 N N N 164 DG N3 N N N 165 DG C4 C Y N 166 DG HOP3 H N N 167 DG HOP2 H N N 168 DG "H5'" H N N 169 DG "H5''" H N N 170 DG "H4'" H N N 171 DG "H3'" H N N 172 DG "HO3'" H N N 173 DG "H2'" H N N 174 DG "H2''" H N N 175 DG "H1'" H N N 176 DG H8 H N N 177 DG H1 H N N 178 DG H21 H N N 179 DG H22 H N N 180 DT OP3 O N N 181 DT P P N N 182 DT OP1 O N N 183 DT OP2 O N N 184 DT "O5'" O N N 185 DT "C5'" C N N 186 DT "C4'" C N R 187 DT "O4'" O N N 188 DT "C3'" C N S 189 DT "O3'" O N N 190 DT "C2'" C N N 191 DT "C1'" C N R 192 DT N1 N N N 193 DT C2 C N N 194 DT O2 O N N 195 DT N3 N N N 196 DT C4 C N N 197 DT O4 O N N 198 DT C5 C N N 199 DT C7 C N N 200 DT C6 C N N 201 DT HOP3 H N N 202 DT HOP2 H N N 203 DT "H5'" H N N 204 DT "H5''" H N N 205 DT "H4'" H N N 206 DT "H3'" H N N 207 DT "HO3'" H N N 208 DT "H2'" H N N 209 DT "H2''" H N N 210 DT "H1'" H N N 211 DT H3 H N N 212 DT H71 H N N 213 DT H72 H N N 214 DT H73 H N N 215 DT H6 H N N 216 GLN N N N N 217 GLN CA C N S 218 GLN C C N N 219 GLN O O N N 220 GLN CB C N N 221 GLN CG C N N 222 GLN CD C N N 223 GLN OE1 O N N 224 GLN NE2 N N N 225 GLN OXT O N N 226 GLN H H N N 227 GLN H2 H N N 228 GLN HA H N N 229 GLN HB2 H N N 230 GLN HB3 H N N 231 GLN HG2 H N N 232 GLN HG3 H N N 233 GLN HE21 H N N 234 GLN HE22 H N N 235 GLN HXT H N N 236 GLU N N N N 237 GLU CA C N S 238 GLU C C N N 239 GLU O O N N 240 GLU CB C N N 241 GLU CG C N N 242 GLU CD C N N 243 GLU OE1 O N N 244 GLU OE2 O N N 245 GLU OXT O N N 246 GLU H H N N 247 GLU H2 H N N 248 GLU HA H N N 249 GLU HB2 H N N 250 GLU HB3 H N N 251 GLU HG2 H N N 252 GLU HG3 H N N 253 GLU HE2 H N N 254 GLU HXT H N N 255 GLY N N N N 256 GLY CA C N N 257 GLY C C N N 258 GLY O O N N 259 GLY OXT O N N 260 GLY H H N N 261 GLY H2 H N N 262 GLY HA2 H N N 263 GLY HA3 H N N 264 GLY HXT H N N 265 GOL C1 C N N 266 GOL O1 O N N 267 GOL C2 C N N 268 GOL O2 O N N 269 GOL C3 C N N 270 GOL O3 O N N 271 GOL H11 H N N 272 GOL H12 H N N 273 GOL HO1 H N N 274 GOL H2 H N N 275 GOL HO2 H N N 276 GOL H31 H N N 277 GOL H32 H N N 278 GOL HO3 H N N 279 HIS N N N N 280 HIS CA C N S 281 HIS C C N N 282 HIS O O N N 283 HIS CB C N N 284 HIS CG C Y N 285 HIS ND1 N Y N 286 HIS CD2 C Y N 287 HIS CE1 C Y N 288 HIS NE2 N Y N 289 HIS OXT O N N 290 HIS H H N N 291 HIS H2 H N N 292 HIS HA H N N 293 HIS HB2 H N N 294 HIS HB3 H N N 295 HIS HD1 H N N 296 HIS HD2 H N N 297 HIS HE1 H N N 298 HIS HE2 H N N 299 HIS HXT H N N 300 HOH O O N N 301 HOH H1 H N N 302 HOH H2 H N N 303 ILE N N N N 304 ILE CA C N S 305 ILE C C N N 306 ILE O O N N 307 ILE CB C N S 308 ILE CG1 C N N 309 ILE CG2 C N N 310 ILE CD1 C N N 311 ILE OXT O N N 312 ILE H H N N 313 ILE H2 H N N 314 ILE HA H N N 315 ILE HB H N N 316 ILE HG12 H N N 317 ILE HG13 H N N 318 ILE HG21 H N N 319 ILE HG22 H N N 320 ILE HG23 H N N 321 ILE HD11 H N N 322 ILE HD12 H N N 323 ILE HD13 H N N 324 ILE HXT H N N 325 LEU N N N N 326 LEU CA C N S 327 LEU C C N N 328 LEU O O N N 329 LEU CB C N N 330 LEU CG C N N 331 LEU CD1 C N N 332 LEU CD2 C N N 333 LEU OXT O N N 334 LEU H H N N 335 LEU H2 H N N 336 LEU HA H N N 337 LEU HB2 H N N 338 LEU HB3 H N N 339 LEU HG H N N 340 LEU HD11 H N N 341 LEU HD12 H N N 342 LEU HD13 H N N 343 LEU HD21 H N N 344 LEU HD22 H N N 345 LEU HD23 H N N 346 LEU HXT H N N 347 LYS N N N N 348 LYS CA C N S 349 LYS C C N N 350 LYS O O N N 351 LYS CB C N N 352 LYS CG C N N 353 LYS CD C N N 354 LYS CE C N N 355 LYS NZ N N N 356 LYS OXT O N N 357 LYS H H N N 358 LYS H2 H N N 359 LYS HA H N N 360 LYS HB2 H N N 361 LYS HB3 H N N 362 LYS HG2 H N N 363 LYS HG3 H N N 364 LYS HD2 H N N 365 LYS HD3 H N N 366 LYS HE2 H N N 367 LYS HE3 H N N 368 LYS HZ1 H N N 369 LYS HZ2 H N N 370 LYS HZ3 H N N 371 LYS HXT H N N 372 MET N N N N 373 MET CA C N S 374 MET C C N N 375 MET O O N N 376 MET CB C N N 377 MET CG C N N 378 MET SD S N N 379 MET CE C N N 380 MET OXT O N N 381 MET H H N N 382 MET H2 H N N 383 MET HA H N N 384 MET HB2 H N N 385 MET HB3 H N N 386 MET HG2 H N N 387 MET HG3 H N N 388 MET HE1 H N N 389 MET HE2 H N N 390 MET HE3 H N N 391 MET HXT H N N 392 PHE N N N N 393 PHE CA C N S 394 PHE C C N N 395 PHE O O N N 396 PHE CB C N N 397 PHE CG C Y N 398 PHE CD1 C Y N 399 PHE CD2 C Y N 400 PHE CE1 C Y N 401 PHE CE2 C Y N 402 PHE CZ C Y N 403 PHE OXT O N N 404 PHE H H N N 405 PHE H2 H N N 406 PHE HA H N N 407 PHE HB2 H N N 408 PHE HB3 H N N 409 PHE HD1 H N N 410 PHE HD2 H N N 411 PHE HE1 H N N 412 PHE HE2 H N N 413 PHE HZ H N N 414 PHE HXT H N N 415 PRO N N N N 416 PRO CA C N S 417 PRO C C N N 418 PRO O O N N 419 PRO CB C N N 420 PRO CG C N N 421 PRO CD C N N 422 PRO OXT O N N 423 PRO H H N N 424 PRO HA H N N 425 PRO HB2 H N N 426 PRO HB3 H N N 427 PRO HG2 H N N 428 PRO HG3 H N N 429 PRO HD2 H N N 430 PRO HD3 H N N 431 PRO HXT H N N 432 SER N N N N 433 SER CA C N S 434 SER C C N N 435 SER O O N N 436 SER CB C N N 437 SER OG O N N 438 SER OXT O N N 439 SER H H N N 440 SER H2 H N N 441 SER HA H N N 442 SER HB2 H N N 443 SER HB3 H N N 444 SER HG H N N 445 SER HXT H N N 446 THR N N N N 447 THR CA C N S 448 THR C C N N 449 THR O O N N 450 THR CB C N R 451 THR OG1 O N N 452 THR CG2 C N N 453 THR OXT O N N 454 THR H H N N 455 THR H2 H N N 456 THR HA H N N 457 THR HB H N N 458 THR HG1 H N N 459 THR HG21 H N N 460 THR HG22 H N N 461 THR HG23 H N N 462 THR HXT H N N 463 TRP N N N N 464 TRP CA C N S 465 TRP C C N N 466 TRP O O N N 467 TRP CB C N N 468 TRP CG C Y N 469 TRP CD1 C Y N 470 TRP CD2 C Y N 471 TRP NE1 N Y N 472 TRP CE2 C Y N 473 TRP CE3 C Y N 474 TRP CZ2 C Y N 475 TRP CZ3 C Y N 476 TRP CH2 C Y N 477 TRP OXT O N N 478 TRP H H N N 479 TRP H2 H N N 480 TRP HA H N N 481 TRP HB2 H N N 482 TRP HB3 H N N 483 TRP HD1 H N N 484 TRP HE1 H N N 485 TRP HE3 H N N 486 TRP HZ2 H N N 487 TRP HZ3 H N N 488 TRP HH2 H N N 489 TRP HXT H N N 490 TYR N N N N 491 TYR CA C N S 492 TYR C C N N 493 TYR O O N N 494 TYR CB C N N 495 TYR CG C Y N 496 TYR CD1 C Y N 497 TYR CD2 C Y N 498 TYR CE1 C Y N 499 TYR CE2 C Y N 500 TYR CZ C Y N 501 TYR OH O N N 502 TYR OXT O N N 503 TYR H H N N 504 TYR H2 H N N 505 TYR HA H N N 506 TYR HB2 H N N 507 TYR HB3 H N N 508 TYR HD1 H N N 509 TYR HD2 H N N 510 TYR HE1 H N N 511 TYR HE2 H N N 512 TYR HH H N N 513 TYR HXT H N N 514 USM OP2 O N N 515 USM P P N N 516 USM OP1 O N N 517 USM OP3 O N N 518 USM "O5'" O N N 519 USM N1 N N N 520 USM C6 C N N 521 USM C2 C N N 522 USM O2 O N N 523 USM N3 N N N 524 USM C4 C N N 525 USM O4 O N N 526 USM C5 C N N 527 USM "C2'" C N R 528 USM "S2'" S N N 529 USM C2A C N N 530 USM "C5'" C N N 531 USM "C4'" C N R 532 USM "O4'" O N N 533 USM "C1'" C N R 534 USM "C3'" C N R 535 USM "O3'" O N N 536 USM HOP2 H N N 537 USM HOP3 H N N 538 USM H6 H N N 539 USM H5 H N N 540 USM "H2'" H N N 541 USM H2A H N N 542 USM H2AA H N N 543 USM H2AB H N N 544 USM "H5'" H N N 545 USM "H5'A" H N N 546 USM "H4'" H N N 547 USM "H1'" H N N 548 USM "H3'" H N N 549 USM "HO3'" H N N 550 USM HN3 H N N 551 VAL N N N N 552 VAL CA C N S 553 VAL C C N N 554 VAL O O N N 555 VAL CB C N N 556 VAL CG1 C N N 557 VAL CG2 C N N 558 VAL OXT O N N 559 VAL H H N N 560 VAL H2 H N N 561 VAL HA H N N 562 VAL HB H N N 563 VAL HG11 H N N 564 VAL HG12 H N N 565 VAL HG13 H N N 566 VAL HG21 H N N 567 VAL HG22 H N N 568 VAL HG23 H N N 569 VAL HXT H N N 570 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 DA OP3 P sing N N 70 DA OP3 HOP3 sing N N 71 DA P OP1 doub N N 72 DA P OP2 sing N N 73 DA P "O5'" sing N N 74 DA OP2 HOP2 sing N N 75 DA "O5'" "C5'" sing N N 76 DA "C5'" "C4'" sing N N 77 DA "C5'" "H5'" sing N N 78 DA "C5'" "H5''" sing N N 79 DA "C4'" "O4'" sing N N 80 DA "C4'" "C3'" sing N N 81 DA "C4'" "H4'" sing N N 82 DA "O4'" "C1'" sing N N 83 DA "C3'" "O3'" sing N N 84 DA "C3'" "C2'" sing N N 85 DA "C3'" "H3'" sing N N 86 DA "O3'" "HO3'" sing N N 87 DA "C2'" "C1'" sing N N 88 DA "C2'" "H2'" sing N N 89 DA "C2'" "H2''" sing N N 90 DA "C1'" N9 sing N N 91 DA "C1'" "H1'" sing N N 92 DA N9 C8 sing Y N 93 DA N9 C4 sing Y N 94 DA C8 N7 doub Y N 95 DA C8 H8 sing N N 96 DA N7 C5 sing Y N 97 DA C5 C6 sing Y N 98 DA C5 C4 doub Y N 99 DA C6 N6 sing N N 100 DA C6 N1 doub Y N 101 DA N6 H61 sing N N 102 DA N6 H62 sing N N 103 DA N1 C2 sing Y N 104 DA C2 N3 doub Y N 105 DA C2 H2 sing N N 106 DA N3 C4 sing Y N 107 DC OP3 P sing N N 108 DC OP3 HOP3 sing N N 109 DC P OP1 doub N N 110 DC P OP2 sing N N 111 DC P "O5'" sing N N 112 DC OP2 HOP2 sing N N 113 DC "O5'" "C5'" sing N N 114 DC "C5'" "C4'" sing N N 115 DC "C5'" "H5'" sing N N 116 DC "C5'" "H5''" sing N N 117 DC "C4'" "O4'" sing N N 118 DC "C4'" "C3'" sing N N 119 DC "C4'" "H4'" sing N N 120 DC "O4'" "C1'" sing N N 121 DC "C3'" "O3'" sing N N 122 DC "C3'" "C2'" sing N N 123 DC "C3'" "H3'" sing N N 124 DC "O3'" "HO3'" sing N N 125 DC "C2'" "C1'" sing N N 126 DC "C2'" "H2'" sing N N 127 DC "C2'" "H2''" sing N N 128 DC "C1'" N1 sing N N 129 DC "C1'" "H1'" sing N N 130 DC N1 C2 sing N N 131 DC N1 C6 sing N N 132 DC C2 O2 doub N N 133 DC C2 N3 sing N N 134 DC N3 C4 doub N N 135 DC C4 N4 sing N N 136 DC C4 C5 sing N N 137 DC N4 H41 sing N N 138 DC N4 H42 sing N N 139 DC C5 C6 doub N N 140 DC C5 H5 sing N N 141 DC C6 H6 sing N N 142 DG OP3 P sing N N 143 DG OP3 HOP3 sing N N 144 DG P OP1 doub N N 145 DG P OP2 sing N N 146 DG P "O5'" sing N N 147 DG OP2 HOP2 sing N N 148 DG "O5'" "C5'" sing N N 149 DG "C5'" "C4'" sing N N 150 DG "C5'" "H5'" sing N N 151 DG "C5'" "H5''" sing N N 152 DG "C4'" "O4'" sing N N 153 DG "C4'" "C3'" sing N N 154 DG "C4'" "H4'" sing N N 155 DG "O4'" "C1'" sing N N 156 DG "C3'" "O3'" sing N N 157 DG "C3'" "C2'" sing N N 158 DG "C3'" "H3'" sing N N 159 DG "O3'" "HO3'" sing N N 160 DG "C2'" "C1'" sing N N 161 DG "C2'" "H2'" sing N N 162 DG "C2'" "H2''" sing N N 163 DG "C1'" N9 sing N N 164 DG "C1'" "H1'" sing N N 165 DG N9 C8 sing Y N 166 DG N9 C4 sing Y N 167 DG C8 N7 doub Y N 168 DG C8 H8 sing N N 169 DG N7 C5 sing Y N 170 DG C5 C6 sing N N 171 DG C5 C4 doub Y N 172 DG C6 O6 doub N N 173 DG C6 N1 sing N N 174 DG N1 C2 sing N N 175 DG N1 H1 sing N N 176 DG C2 N2 sing N N 177 DG C2 N3 doub N N 178 DG N2 H21 sing N N 179 DG N2 H22 sing N N 180 DG N3 C4 sing N N 181 DT OP3 P sing N N 182 DT OP3 HOP3 sing N N 183 DT P OP1 doub N N 184 DT P OP2 sing N N 185 DT P "O5'" sing N N 186 DT OP2 HOP2 sing N N 187 DT "O5'" "C5'" sing N N 188 DT "C5'" "C4'" sing N N 189 DT "C5'" "H5'" sing N N 190 DT "C5'" "H5''" sing N N 191 DT "C4'" "O4'" sing N N 192 DT "C4'" "C3'" sing N N 193 DT "C4'" "H4'" sing N N 194 DT "O4'" "C1'" sing N N 195 DT "C3'" "O3'" sing N N 196 DT "C3'" "C2'" sing N N 197 DT "C3'" "H3'" sing N N 198 DT "O3'" "HO3'" sing N N 199 DT "C2'" "C1'" sing N N 200 DT "C2'" "H2'" sing N N 201 DT "C2'" "H2''" sing N N 202 DT "C1'" N1 sing N N 203 DT "C1'" "H1'" sing N N 204 DT N1 C2 sing N N 205 DT N1 C6 sing N N 206 DT C2 O2 doub N N 207 DT C2 N3 sing N N 208 DT N3 C4 sing N N 209 DT N3 H3 sing N N 210 DT C4 O4 doub N N 211 DT C4 C5 sing N N 212 DT C5 C7 sing N N 213 DT C5 C6 doub N N 214 DT C7 H71 sing N N 215 DT C7 H72 sing N N 216 DT C7 H73 sing N N 217 DT C6 H6 sing N N 218 GLN N CA sing N N 219 GLN N H sing N N 220 GLN N H2 sing N N 221 GLN CA C sing N N 222 GLN CA CB sing N N 223 GLN CA HA sing N N 224 GLN C O doub N N 225 GLN C OXT sing N N 226 GLN CB CG sing N N 227 GLN CB HB2 sing N N 228 GLN CB HB3 sing N N 229 GLN CG CD sing N N 230 GLN CG HG2 sing N N 231 GLN CG HG3 sing N N 232 GLN CD OE1 doub N N 233 GLN CD NE2 sing N N 234 GLN NE2 HE21 sing N N 235 GLN NE2 HE22 sing N N 236 GLN OXT HXT sing N N 237 GLU N CA sing N N 238 GLU N H sing N N 239 GLU N H2 sing N N 240 GLU CA C sing N N 241 GLU CA CB sing N N 242 GLU CA HA sing N N 243 GLU C O doub N N 244 GLU C OXT sing N N 245 GLU CB CG sing N N 246 GLU CB HB2 sing N N 247 GLU CB HB3 sing N N 248 GLU CG CD sing N N 249 GLU CG HG2 sing N N 250 GLU CG HG3 sing N N 251 GLU CD OE1 doub N N 252 GLU CD OE2 sing N N 253 GLU OE2 HE2 sing N N 254 GLU OXT HXT sing N N 255 GLY N CA sing N N 256 GLY N H sing N N 257 GLY N H2 sing N N 258 GLY CA C sing N N 259 GLY CA HA2 sing N N 260 GLY CA HA3 sing N N 261 GLY C O doub N N 262 GLY C OXT sing N N 263 GLY OXT HXT sing N N 264 GOL C1 O1 sing N N 265 GOL C1 C2 sing N N 266 GOL C1 H11 sing N N 267 GOL C1 H12 sing N N 268 GOL O1 HO1 sing N N 269 GOL C2 O2 sing N N 270 GOL C2 C3 sing N N 271 GOL C2 H2 sing N N 272 GOL O2 HO2 sing N N 273 GOL C3 O3 sing N N 274 GOL C3 H31 sing N N 275 GOL C3 H32 sing N N 276 GOL O3 HO3 sing N N 277 HIS N CA sing N N 278 HIS N H sing N N 279 HIS N H2 sing N N 280 HIS CA C sing N N 281 HIS CA CB sing N N 282 HIS CA HA sing N N 283 HIS C O doub N N 284 HIS C OXT sing N N 285 HIS CB CG sing N N 286 HIS CB HB2 sing N N 287 HIS CB HB3 sing N N 288 HIS CG ND1 sing Y N 289 HIS CG CD2 doub Y N 290 HIS ND1 CE1 doub Y N 291 HIS ND1 HD1 sing N N 292 HIS CD2 NE2 sing Y N 293 HIS CD2 HD2 sing N N 294 HIS CE1 NE2 sing Y N 295 HIS CE1 HE1 sing N N 296 HIS NE2 HE2 sing N N 297 HIS OXT HXT sing N N 298 HOH O H1 sing N N 299 HOH O H2 sing N N 300 ILE N CA sing N N 301 ILE N H sing N N 302 ILE N H2 sing N N 303 ILE CA C sing N N 304 ILE CA CB sing N N 305 ILE CA HA sing N N 306 ILE C O doub N N 307 ILE C OXT sing N N 308 ILE CB CG1 sing N N 309 ILE CB CG2 sing N N 310 ILE CB HB sing N N 311 ILE CG1 CD1 sing N N 312 ILE CG1 HG12 sing N N 313 ILE CG1 HG13 sing N N 314 ILE CG2 HG21 sing N N 315 ILE CG2 HG22 sing N N 316 ILE CG2 HG23 sing N N 317 ILE CD1 HD11 sing N N 318 ILE CD1 HD12 sing N N 319 ILE CD1 HD13 sing N N 320 ILE OXT HXT sing N N 321 LEU N CA sing N N 322 LEU N H sing N N 323 LEU N H2 sing N N 324 LEU CA C sing N N 325 LEU CA CB sing N N 326 LEU CA HA sing N N 327 LEU C O doub N N 328 LEU C OXT sing N N 329 LEU CB CG sing N N 330 LEU CB HB2 sing N N 331 LEU CB HB3 sing N N 332 LEU CG CD1 sing N N 333 LEU CG CD2 sing N N 334 LEU CG HG sing N N 335 LEU CD1 HD11 sing N N 336 LEU CD1 HD12 sing N N 337 LEU CD1 HD13 sing N N 338 LEU CD2 HD21 sing N N 339 LEU CD2 HD22 sing N N 340 LEU CD2 HD23 sing N N 341 LEU OXT HXT sing N N 342 LYS N CA sing N N 343 LYS N H sing N N 344 LYS N H2 sing N N 345 LYS CA C sing N N 346 LYS CA CB sing N N 347 LYS CA HA sing N N 348 LYS C O doub N N 349 LYS C OXT sing N N 350 LYS CB CG sing N N 351 LYS CB HB2 sing N N 352 LYS CB HB3 sing N N 353 LYS CG CD sing N N 354 LYS CG HG2 sing N N 355 LYS CG HG3 sing N N 356 LYS CD CE sing N N 357 LYS CD HD2 sing N N 358 LYS CD HD3 sing N N 359 LYS CE NZ sing N N 360 LYS CE HE2 sing N N 361 LYS CE HE3 sing N N 362 LYS NZ HZ1 sing N N 363 LYS NZ HZ2 sing N N 364 LYS NZ HZ3 sing N N 365 LYS OXT HXT sing N N 366 MET N CA sing N N 367 MET N H sing N N 368 MET N H2 sing N N 369 MET CA C sing N N 370 MET CA CB sing N N 371 MET CA HA sing N N 372 MET C O doub N N 373 MET C OXT sing N N 374 MET CB CG sing N N 375 MET CB HB2 sing N N 376 MET CB HB3 sing N N 377 MET CG SD sing N N 378 MET CG HG2 sing N N 379 MET CG HG3 sing N N 380 MET SD CE sing N N 381 MET CE HE1 sing N N 382 MET CE HE2 sing N N 383 MET CE HE3 sing N N 384 MET OXT HXT sing N N 385 PHE N CA sing N N 386 PHE N H sing N N 387 PHE N H2 sing N N 388 PHE CA C sing N N 389 PHE CA CB sing N N 390 PHE CA HA sing N N 391 PHE C O doub N N 392 PHE C OXT sing N N 393 PHE CB CG sing N N 394 PHE CB HB2 sing N N 395 PHE CB HB3 sing N N 396 PHE CG CD1 doub Y N 397 PHE CG CD2 sing Y N 398 PHE CD1 CE1 sing Y N 399 PHE CD1 HD1 sing N N 400 PHE CD2 CE2 doub Y N 401 PHE CD2 HD2 sing N N 402 PHE CE1 CZ doub Y N 403 PHE CE1 HE1 sing N N 404 PHE CE2 CZ sing Y N 405 PHE CE2 HE2 sing N N 406 PHE CZ HZ sing N N 407 PHE OXT HXT sing N N 408 PRO N CA sing N N 409 PRO N CD sing N N 410 PRO N H sing N N 411 PRO CA C sing N N 412 PRO CA CB sing N N 413 PRO CA HA sing N N 414 PRO C O doub N N 415 PRO C OXT sing N N 416 PRO CB CG sing N N 417 PRO CB HB2 sing N N 418 PRO CB HB3 sing N N 419 PRO CG CD sing N N 420 PRO CG HG2 sing N N 421 PRO CG HG3 sing N N 422 PRO CD HD2 sing N N 423 PRO CD HD3 sing N N 424 PRO OXT HXT sing N N 425 SER N CA sing N N 426 SER N H sing N N 427 SER N H2 sing N N 428 SER CA C sing N N 429 SER CA CB sing N N 430 SER CA HA sing N N 431 SER C O doub N N 432 SER C OXT sing N N 433 SER CB OG sing N N 434 SER CB HB2 sing N N 435 SER CB HB3 sing N N 436 SER OG HG sing N N 437 SER OXT HXT sing N N 438 THR N CA sing N N 439 THR N H sing N N 440 THR N H2 sing N N 441 THR CA C sing N N 442 THR CA CB sing N N 443 THR CA HA sing N N 444 THR C O doub N N 445 THR C OXT sing N N 446 THR CB OG1 sing N N 447 THR CB CG2 sing N N 448 THR CB HB sing N N 449 THR OG1 HG1 sing N N 450 THR CG2 HG21 sing N N 451 THR CG2 HG22 sing N N 452 THR CG2 HG23 sing N N 453 THR OXT HXT sing N N 454 TRP N CA sing N N 455 TRP N H sing N N 456 TRP N H2 sing N N 457 TRP CA C sing N N 458 TRP CA CB sing N N 459 TRP CA HA sing N N 460 TRP C O doub N N 461 TRP C OXT sing N N 462 TRP CB CG sing N N 463 TRP CB HB2 sing N N 464 TRP CB HB3 sing N N 465 TRP CG CD1 doub Y N 466 TRP CG CD2 sing Y N 467 TRP CD1 NE1 sing Y N 468 TRP CD1 HD1 sing N N 469 TRP CD2 CE2 doub Y N 470 TRP CD2 CE3 sing Y N 471 TRP NE1 CE2 sing Y N 472 TRP NE1 HE1 sing N N 473 TRP CE2 CZ2 sing Y N 474 TRP CE3 CZ3 doub Y N 475 TRP CE3 HE3 sing N N 476 TRP CZ2 CH2 doub Y N 477 TRP CZ2 HZ2 sing N N 478 TRP CZ3 CH2 sing Y N 479 TRP CZ3 HZ3 sing N N 480 TRP CH2 HH2 sing N N 481 TRP OXT HXT sing N N 482 TYR N CA sing N N 483 TYR N H sing N N 484 TYR N H2 sing N N 485 TYR CA C sing N N 486 TYR CA CB sing N N 487 TYR CA HA sing N N 488 TYR C O doub N N 489 TYR C OXT sing N N 490 TYR CB CG sing N N 491 TYR CB HB2 sing N N 492 TYR CB HB3 sing N N 493 TYR CG CD1 doub Y N 494 TYR CG CD2 sing Y N 495 TYR CD1 CE1 sing Y N 496 TYR CD1 HD1 sing N N 497 TYR CD2 CE2 doub Y N 498 TYR CD2 HD2 sing N N 499 TYR CE1 CZ doub Y N 500 TYR CE1 HE1 sing N N 501 TYR CE2 CZ sing Y N 502 TYR CE2 HE2 sing N N 503 TYR CZ OH sing N N 504 TYR OH HH sing N N 505 TYR OXT HXT sing N N 506 USM P OP2 sing N N 507 USM OP2 HOP2 sing N N 508 USM OP1 P doub N N 509 USM "O5'" P sing N N 510 USM P OP3 sing N N 511 USM OP3 HOP3 sing N N 512 USM "C5'" "O5'" sing N N 513 USM C6 N1 sing N N 514 USM N1 C2 sing N N 515 USM N1 "C1'" sing N N 516 USM C5 C6 doub N N 517 USM C6 H6 sing N N 518 USM N3 C2 sing N N 519 USM C2 O2 doub N N 520 USM C4 N3 sing N N 521 USM C5 C4 sing N N 522 USM O4 C4 doub N N 523 USM C5 H5 sing N N 524 USM "C3'" "C2'" sing N N 525 USM "C2'" "C1'" sing N N 526 USM "C2'" "S2'" sing N N 527 USM "C2'" "H2'" sing N N 528 USM "S2'" C2A sing N N 529 USM C2A H2A sing N N 530 USM C2A H2AA sing N N 531 USM C2A H2AB sing N N 532 USM "C5'" "C4'" sing N N 533 USM "C5'" "H5'" sing N N 534 USM "C5'" "H5'A" sing N N 535 USM "C3'" "C4'" sing N N 536 USM "C4'" "O4'" sing N N 537 USM "C4'" "H4'" sing N N 538 USM "O4'" "C1'" sing N N 539 USM "C1'" "H1'" sing N N 540 USM "O3'" "C3'" sing N N 541 USM "C3'" "H3'" sing N N 542 USM "O3'" "HO3'" sing N N 543 USM N3 HN3 sing N N 544 VAL N CA sing N N 545 VAL N H sing N N 546 VAL N H2 sing N N 547 VAL CA C sing N N 548 VAL CA CB sing N N 549 VAL CA HA sing N N 550 VAL C O doub N N 551 VAL C OXT sing N N 552 VAL CB CG1 sing N N 553 VAL CB CG2 sing N N 554 VAL CB HB sing N N 555 VAL CG1 HG11 sing N N 556 VAL CG1 HG12 sing N N 557 VAL CG1 HG13 sing N N 558 VAL CG2 HG21 sing N N 559 VAL CG2 HG22 sing N N 560 VAL CG2 HG23 sing N N 561 VAL OXT HXT sing N N 562 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4OPK 'double helix' 4OPK 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 D DC 1 1_555 D DG 12 2_656 0.063 -0.141 0.119 -19.537 -3.493 -0.330 1 D_DC1:DG12_D D 1 ? D 12 ? 19 1 1 D DG 2 1_555 D DC 11 2_656 -0.410 -0.232 -0.033 3.975 -6.600 -0.793 2 D_DG2:DC11_D D 2 ? D 11 ? 19 1 1 D DC 3 1_555 D DG 10 2_656 0.292 -0.114 -0.178 0.494 -4.545 1.093 3 D_DC3:DG10_D D 3 ? D 10 ? 19 1 1 D DG 4 1_555 D DC 9 2_656 -0.209 -0.144 0.110 15.743 -8.293 -0.082 4 D_DG4:DC9_D D 4 ? D 9 ? 19 1 1 D DA 5 1_555 D DT 8 2_656 0.151 -0.278 -0.237 11.359 -16.862 1.047 5 D_DA5:DT8_D D 5 ? D 8 ? 20 1 1 D DA 6 1_555 D USM 7 2_656 0.231 -0.200 -0.044 10.811 -23.492 0.844 6 D_DA6:USM7_D D 6 ? D 7 ? 20 1 1 D USM 7 1_555 D DA 6 2_656 -0.231 -0.200 -0.044 -10.811 -23.492 0.844 7 D_USM7:DA6_D D 7 ? D 6 ? 20 1 1 D DT 8 1_555 D DA 5 2_656 -0.151 -0.278 -0.237 -11.359 -16.862 1.047 8 D_DT8:DA5_D D 8 ? D 5 ? 20 1 1 D DC 9 1_555 D DG 4 2_656 0.209 -0.144 0.110 -15.743 -8.293 -0.082 9 D_DC9:DG4_D D 9 ? D 4 ? 19 1 1 D DG 10 1_555 D DC 3 2_656 -0.292 -0.114 -0.178 -0.495 -4.545 1.093 10 D_DG10:DC3_D D 10 ? D 3 ? 19 1 1 D DC 11 1_555 D DG 2 2_656 0.410 -0.232 -0.033 -3.975 -6.600 -0.793 11 D_DC11:DG2_D D 11 ? D 2 ? 19 1 1 D DG 12 1_555 D DC 1 2_656 -0.063 -0.141 0.119 19.537 -3.493 -0.330 12 D_DG12:DC1_D D 12 ? D 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 D DC 1 1_555 D DG 12 2_656 D DG 2 1_555 D DC 11 2_656 0.298 0.170 3.003 3.067 11.306 26.338 -2.027 0.044 2.849 23.396 -6.346 28.784 1 DD_DC1DG2:DC11DG12_DD D 1 ? D 12 ? D 2 ? D 11 ? 1 D DG 2 1_555 D DC 11 2_656 D DC 3 1_555 D DG 10 2_656 -0.485 -0.471 3.410 0.752 9.756 33.661 -2.284 0.922 3.144 16.421 -1.267 35.014 2 DD_DG2DC3:DG10DC11_DD D 2 ? D 11 ? D 3 ? D 10 ? 1 D DC 3 1_555 D DG 10 2_656 D DG 4 1_555 D DC 9 2_656 0.386 0.447 3.195 -2.246 16.044 24.118 -2.715 -1.276 2.882 33.933 4.751 28.987 3 DD_DC3DG4:DC9DG10_DD D 3 ? D 10 ? D 4 ? D 9 ? 1 D DG 4 1_555 D DC 9 2_656 D DA 5 1_555 D DT 8 2_656 -0.776 -0.192 3.338 -1.955 7.421 39.453 -1.143 0.903 3.284 10.868 2.864 40.164 4 DD_DG4DA5:DT8DC9_DD D 4 ? D 9 ? D 5 ? D 8 ? 1 D DA 5 1_555 D DT 8 2_656 D DA 6 1_555 D USM 7 2_656 0.208 -0.216 3.256 -2.477 6.586 35.321 -1.275 -0.684 3.145 10.724 4.034 35.993 5 DD_DA5DA6:USM7DT8_DD D 5 ? D 8 ? D 6 ? D 7 ? 1 D DA 6 1_555 D USM 7 2_656 D USM 7 1_555 D DA 6 2_656 0.000 -0.184 3.619 0.000 -11.451 38.308 1.204 0.000 3.529 -16.993 0.000 39.921 6 DD_DA6USM7:DA6USM7_DD D 6 ? D 7 ? D 7 ? D 6 ? 1 D USM 7 1_555 D DA 6 2_656 D DT 8 1_555 D DA 5 2_656 -0.208 -0.216 3.256 2.477 6.586 35.321 -1.275 0.684 3.145 10.724 -4.034 35.993 7 DD_USM7DT8:DA5DA6_DD D 7 ? D 6 ? D 8 ? D 5 ? 1 D DT 8 1_555 D DA 5 2_656 D DC 9 1_555 D DG 4 2_656 0.776 -0.192 3.338 1.956 7.421 39.453 -1.143 -0.903 3.284 10.868 -2.864 40.164 8 DD_DT8DC9:DG4DA5_DD D 8 ? D 5 ? D 9 ? D 4 ? 1 D DC 9 1_555 D DG 4 2_656 D DG 10 1_555 D DC 3 2_656 -0.386 0.447 3.195 2.246 16.044 24.118 -2.715 1.276 2.882 33.933 -4.751 28.987 9 DD_DC9DG10:DC3DG4_DD D 9 ? D 4 ? D 10 ? D 3 ? 1 D DG 10 1_555 D DC 3 2_656 D DC 11 1_555 D DG 2 2_656 0.485 -0.471 3.410 -0.752 9.756 33.661 -2.284 -0.922 3.144 16.421 1.266 35.014 10 DD_DG10DC11:DG2DC3_DD D 10 ? D 3 ? D 11 ? D 2 ? 1 D DC 11 1_555 D DG 2 2_656 D DG 12 1_555 D DC 1 2_656 -0.298 0.170 3.003 -3.067 11.306 26.338 -2.027 -0.044 2.849 23.396 6.346 28.784 11 DD_DC11DG12:DC1DG2_DD D 11 ? D 2 ? D 12 ? D 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 GLYCEROL GOL 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3D0P _pdbx_initial_refinement_model.details 'PDB ENTRY 3D0P' #