HEADER HYDROLASE/HYDROLASE INHIBITOR 09-FEB-14 4OQH TITLE CRYSTAL STRUCTURE OF STABILIZED TEM-1 BETA-LACTAMASE VARIANT V.13 TITLE 2 CARRYING R164S MUTATION IN COMPLEX WITH BORON-BASED INHIBITOR EC25 COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXTENDED SPECTRUM BETA-LACTAMASE TEM-63; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TEM-1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: BLATEM-63; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA-LACTAMASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.DELLUS-GUR,M.ELIAS,J.S.FRASER,D.S.TAWFIK REVDAT 2 17-JAN-18 4OQH 1 JRNL REVDAT 1 20-MAY-15 4OQH 0 JRNL AUTH E.DELLUS-GUR,M.ELIAS,E.CASELLI,F.PRATI,M.L.SALVERDA, JRNL AUTH 2 J.A.DE VISSER,J.S.FRASER,D.S.TAWFIK JRNL TITL NEGATIVE EPISTASIS AND EVOLVABILITY IN TEM-1 JRNL TITL 2 BETA-LACTAMASE--THE THIN LINE BETWEEN AN ENZYME'S JRNL TITL 3 CONFORMATIONAL FREEDOM AND DISORDER. JRNL REF J. MOL. BIOL. V. 427 2396 2015 JRNL REFN ESSN 1089-8638 JRNL PMID 26004540 JRNL DOI 10.1016/J.JMB.2015.05.011 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.1 REMARK 3 NUMBER OF REFLECTIONS : 24240 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1276 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1696 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2100 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.2540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2010 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 367 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.142 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.135 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.080 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.342 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.893 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2246 ; 0.006 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3053 ; 1.463 ; 1.994 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 295 ; 5.322 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 96 ;36.362 ;24.479 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 397 ;13.071 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;14.650 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 349 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1700 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 464 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1126 ; 1.739 ; 1.202 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1125 ; 1.884 ; 1.240 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1412 ; 2.673 ; 1.796 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1413 ; 2.871 ; 1.855 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1116 ; 2.349 ; 1.452 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1114 ; 2.388 ; 1.489 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1631 ; 3.614 ; 2.170 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2984 ; 7.603 ;12.567 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2750 ; 7.178 ;11.128 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4OQH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000084822. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25519 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 45.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 9% (WT/VOL) POLYETHYLENE GLYCOL (PEG) REMARK 280 8000, 100 MM MES PH 6.2, AND 200MM CA(OAC)2, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 77.77000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.51500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 77.77000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.51500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -1.51010 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 34.58705 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 N ASN A 174 LIES ON A SPECIAL POSITION. REMARK 375 CA CA A 302 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 644 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 717 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 172 O HOH A 628 1.95 REMARK 500 OG SER A 69 O4 2UL A 303 2.03 REMARK 500 OG SER A 69 O3 2UL A 303 2.06 REMARK 500 O HOH A 760 O HOH A 767 2.07 REMARK 500 O HOH A 677 O HOH A 755 2.09 REMARK 500 O HOH A 661 O HOH A 667 2.10 REMARK 500 O HOH A 725 O HOH A 767 2.16 REMARK 500 O HOH A 590 O HOH A 659 2.17 REMARK 500 O HOH A 724 O HOH A 731 2.17 REMARK 500 N THR A 268 O HOH A 432 2.18 REMARK 500 O HOH A 432 O HOH A 553 2.18 REMARK 500 O HOH A 568 O HOH A 574 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 173 C - N - CA ANGL. DEV. = 15.6 DEGREES REMARK 500 PRO A 173 C - N - CD ANGL. DEV. = -25.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 68 -145.98 52.72 REMARK 500 ILE A 172 125.67 105.21 REMARK 500 PRO A 173 -156.43 -70.68 REMARK 500 PRO A 173 88.95 49.73 REMARK 500 LEU A 219 -123.10 -105.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE A 172 PRO A 173 35.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 36 OE2 REMARK 620 2 HOH A 431 O 90.4 REMARK 620 3 HOH A 430 O 96.0 79.8 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2UL A 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4IBR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF STABILIZED TEM-1 BETA-LACTAMASE VARIANT V.13 REMARK 900 CARRYING G238S/E104K MUTATIONS REMARK 900 RELATED ID: 4IBX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF STABILIZED TEM-1 BETA-LACTAMASE VARIANT V.13 REMARK 900 RELATED ID: 4OP5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF STABILIZED TEM-1 BETA-LACTAMASE VARIANT V.13 REMARK 900 CARRYING R164S MUTATION REMARK 900 RELATED ID: 4OP8 RELATED DB: PDB REMARK 900 ROOM TEMPERATURE CRYSTAL STRUCTURE OF STABILIZED TEM-1 BETA- REMARK 900 LACTAMASE VARIANT V.13 CARRYING G238S MUTATION REMARK 900 RELATED ID: 4OPQ RELATED DB: PDB REMARK 900 ROOM TEMPERATURE CRYSTAL STRUCTURE OF STABILIZED TEM-1 BETA- REMARK 900 LACTAMASE VARIANT V.13 CARRYING R164S/G238S MUTATIONS REMARK 900 RELATED ID: 4OPR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF STABILIZED TEM-1 BETA-LACTAMASE VARIANT V.13 REMARK 900 CARRYING G238S MUTATION REMARK 900 RELATED ID: 4OPY RELATED DB: PDB REMARK 900 RELATED ID: 4OPZ RELATED DB: PDB REMARK 900 RELATED ID: 4OQ0 RELATED DB: PDB REMARK 900 RELATED ID: 4OQG RELATED DB: PDB REMARK 900 RELATED ID: 4OQI RELATED DB: PDB DBREF 4OQH A 25 287 UNP Q9AGJ5 Q9AGJ5_ECOLX 24 286 SEQADV 4OQH GLY A 41 UNP Q9AGJ5 ALA 40 ENGINEERED MUTATION SEQADV 4OQH ALA A 51 UNP Q9AGJ5 ASN 50 ENGINEERED MUTATION SEQADV 4OQH GLU A 103 UNP Q9AGJ5 LYS 102 ENGINEERED MUTATION SEQADV 4OQH GLY A 119 UNP Q9AGJ5 ARG 118 ENGINEERED MUTATION SEQADV 4OQH VAL A 183 UNP Q9AGJ5 ALA 182 ENGINEERED MUTATION SEQADV 4OQH ALA A 200 UNP Q9AGJ5 LEU 199 ENGINEERED MUTATION SEQADV 4OQH MET A 262 UNP Q9AGJ5 THR 261 ENGINEERED MUTATION SEQRES 1 A 263 HIS PRO GLU THR LEU VAL LYS VAL LYS ASP ALA GLU ASP SEQRES 2 A 263 GLN LEU GLY GLY ARG VAL GLY TYR ILE GLU LEU ASP LEU SEQRES 3 A 263 ALA SER GLY LYS ILE LEU GLU SER PHE ARG PRO GLU GLU SEQRES 4 A 263 ARG PHE PRO MET MET SER THR PHE LYS VAL LEU LEU CYS SEQRES 5 A 263 GLY ALA VAL LEU SER ARG VAL ASP ALA GLY GLN GLU GLN SEQRES 6 A 263 LEU GLY ARG ARG ILE HIS TYR SER GLN ASN ASP LEU VAL SEQRES 7 A 263 GLU TYR SER PRO VAL THR GLU LYS HIS LEU THR ASP GLY SEQRES 8 A 263 MET THR VAL GLY GLU LEU CYS SER ALA ALA ILE THR MET SEQRES 9 A 263 SER ASP ASN THR ALA ALA ASN LEU LEU LEU THR THR ILE SEQRES 10 A 263 GLY GLY PRO LYS GLU LEU THR ALA PHE LEU HIS ASN MET SEQRES 11 A 263 GLY ASP HIS VAL THR ARG LEU ASP SER TRP GLU PRO GLU SEQRES 12 A 263 LEU ASN GLU ALA ILE PRO ASN ASP GLU ARG ASP THR THR SEQRES 13 A 263 THR PRO VAL ALA MET ALA THR THR LEU ARG LYS LEU LEU SEQRES 14 A 263 THR GLY GLU LEU LEU THR ALA ALA SER ARG GLN GLN LEU SEQRES 15 A 263 ILE ASP TRP MET GLU ALA ASP LYS VAL ALA GLY PRO LEU SEQRES 16 A 263 LEU ARG SER ALA LEU PRO ALA GLY TRP PHE ILE ALA ASP SEQRES 17 A 263 LYS SER GLY ALA GLY GLU ARG GLY SER ARG GLY ILE ILE SEQRES 18 A 263 ALA ALA LEU GLY PRO ASP GLY LYS PRO SER ARG ILE VAL SEQRES 19 A 263 VAL ILE TYR MET THR GLY SER GLN ALA THR MET ASP GLU SEQRES 20 A 263 ARG ASN ARG GLN ILE ALA GLU ILE GLY ALA SER LEU ILE SEQRES 21 A 263 LYS HIS TRP HET EDO A 301 4 HET CA A 302 1 HET 2UL A 303 25 HETNAM EDO 1,2-ETHANEDIOL HETNAM CA CALCIUM ION HETNAM 2UL 3-[(2R)-2-{[(2R)-2-AMINO-2-PHENYLACETYL]AMINO}-2- HETNAM 2 2UL (DIHYDROXYBORANYL)ETHYL]BENZOIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO C2 H6 O2 FORMUL 3 CA CA 2+ FORMUL 4 2UL C17 H19 B N2 O5 FORMUL 5 HOH *367(H2 O) HELIX 1 1 GLU A 27 GLY A 40 1 14 HELIX 2 2 THR A 70 ALA A 85 1 16 HELIX 3 3 SER A 97 LEU A 101 5 5 HELIX 4 4 VAL A 107 HIS A 111 5 5 HELIX 5 5 VAL A 118 MET A 128 1 11 HELIX 6 6 ASP A 130 GLY A 142 1 13 HELIX 7 7 GLY A 143 MET A 154 1 12 HELIX 8 8 PRO A 166 GLU A 170 5 5 HELIX 9 9 THR A 181 GLY A 195 1 15 HELIX 10 10 THR A 199 ALA A 212 1 14 HELIX 11 11 LEU A 219 LEU A 224 5 6 HELIX 12 12 THR A 268 HIS A 286 1 19 SHEET 1 A 5 ILE A 55 PHE A 59 0 SHEET 2 A 5 ARG A 42 ASP A 49 -1 N GLU A 47 O LEU A 56 SHEET 3 A 5 ARG A 256 THR A 263 -1 O TYR A 261 N GLY A 44 SHEET 4 A 5 ARG A 242 GLY A 249 -1 N ALA A 246 O VAL A 258 SHEET 5 A 5 PHE A 229 ALA A 236 -1 N PHE A 229 O GLY A 249 SHEET 1 B 2 PHE A 65 PRO A 66 0 SHEET 2 B 2 THR A 179 THR A 180 -1 O THR A 180 N PHE A 65 SHEET 1 C 2 ARG A 93 ILE A 94 0 SHEET 2 C 2 MET A 116 THR A 117 -1 O MET A 116 N ILE A 94 SSBOND 1 CYS A 76 CYS A 122 1555 1555 2.04 LINK OE2 GLU A 36 CA CA A 302 1555 1555 2.32 LINK CA CA A 302 O HOH A 431 1555 1555 2.33 LINK CA CA A 302 O HOH A 430 1555 1555 2.35 LINK OG SER A 69 B 2UL A 303 1555 1555 1.42 CISPEP 1 GLU A 165 PRO A 166 0 1.85 CISPEP 2 GLU A 165 PRO A 166 0 1.98 CISPEP 3 ILE A 172 PRO A 173 0 -0.52 CISPEP 4 PRO A 173 ASN A 174 0 1.86 CISPEP 5 PRO A 173 ASN A 174 0 -1.33 CISPEP 6 ASN A 174 ASP A 175 0 -0.77 CISPEP 7 ASN A 174 ASP A 175 0 3.28 SITE 1 AC1 5 ASP A 100 ASN A 135 LEU A 136 THR A 139 SITE 2 AC1 5 HOH A 436 SITE 1 AC2 3 GLU A 36 HOH A 430 HOH A 431 SITE 1 AC3 16 MET A 68 SER A 69 GLU A 103 SER A 129 SITE 2 AC3 16 ASN A 131 GLU A 165 LEU A 168 ASN A 169 SITE 3 AC3 16 LYS A 233 SER A 234 GLY A 235 ALA A 236 SITE 4 AC3 16 ARG A 242 HOH A 611 HOH A 642 HOH A 705 CRYST1 155.540 47.030 34.620 90.00 92.50 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006429 0.000000 0.000281 0.00000 SCALE2 0.000000 0.021263 0.000000 0.00000 SCALE3 0.000000 0.000000 0.028913 0.00000