HEADER TRANSCRIPTION 10-FEB-14 4OQP TITLE STRUCTURE OF THE EFFECTOR-BINDING DOMAIN OF DEOXYRIBONUCLEOSIDE TITLE 2 REGULATOR DEOR FROM BACILLUS SUBTILIS IN COMPLEX WITH DEOXYRIBOSE-5- TITLE 3 PHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEOXYRIBONUCLEOSIDE REGULATOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. SUBTILIS; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: DEOR, YXXC, BSU39430; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET151 KEYWDS ROSSMANN FOLD, SUGAR-BINDING TRANSCRIPTIONAL REGULATOR, SCHIFF BASE, KEYWDS 2 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR P.REZACOVA,J.SKERLOVA REVDAT 5 20-SEP-23 4OQP 1 REMARK LINK REVDAT 4 20-NOV-19 4OQP 1 SEQADV LINK REVDAT 3 01-OCT-14 4OQP 1 JRNL REVDAT 2 18-JUN-14 4OQP 1 JRNL REVDAT 1 04-JUN-14 4OQP 0 JRNL AUTH J.SKERLOVA,M.FABRY,M.HUBALEK,Z.OTWINOWSKI,P.REZACOVA JRNL TITL STRUCTURE OF THE EFFECTOR-BINDING DOMAIN OF JRNL TITL 2 DEOXYRIBONUCLEOSIDE REGULATOR DEOR FROM BACILLUS SUBTILIS. JRNL REF FEBS J. V. 281 4280 2014 JRNL REFN ISSN 1742-464X JRNL PMID 24863636 JRNL DOI 10.1111/FEBS.12856 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.REZACOVA,M.KOZISEK,S.F.MOY,I.SIEGLOVA,A.JOACHIMIAK, REMARK 1 AUTH 2 M.MACHIUS,Z.OTWINOWSKI REMARK 1 TITL CRYSTAL STRUCTURES OF THE EFFECTOR-BINDING DOMAIN OF REMARK 1 TITL 2 REPRESSOR CENTRAL GLYCOLYTIC GENE REGULATOR FROM BACILLUS REMARK 1 TITL 3 SUBTILIS REVEAL LIGAND-INDUCED STRUCTURAL CHANGES UPON REMARK 1 TITL 4 BINDING OF SEVERAL GLYCOLYTIC INTERMEDIATES. REMARK 1 REF MOL.MICROBIOL. V. 69 895 2008 REMARK 1 REFN ISSN 0950-382X REMARK 1 PMID 18554327 REMARK 1 DOI 10.1111/J.1365-2958.2008.06318.X REMARK 1 REFERENCE 2 REMARK 1 AUTH J.PISACKOVA,K.PROCHAZKOVA,M.FABRY,P.REZACOVA REMARK 1 TITL CRYSTALLIZATION OF THE EFFECTOR-BINDING DOMAIN OF REPRESSOR REMARK 1 TITL 2 DEOR FROM BACILLUS SUBTILIS REMARK 1 REF CRYST.GROWTHDES. V. 13 844 2013 REMARK 1 REFN ISSN 1528-7483 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 3 NUMBER OF REFLECTIONS : 32880 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1750 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1548 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 59.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.2370 REMARK 3 BIN FREE R VALUE SET COUNT : 74 REMARK 3 BIN FREE R VALUE : 0.2860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1988 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 264 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.082 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.085 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.055 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.784 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2163 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2117 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2949 ; 1.488 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4894 ; 0.847 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 294 ; 5.701 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 102 ;34.758 ;24.118 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 403 ;12.846 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;17.438 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 337 ; 0.130 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2480 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 498 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1057 ; 0.838 ; 1.041 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1056 ; 0.831 ; 1.039 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1330 ; 1.435 ; 1.553 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1331 ; 1.437 ; 1.555 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1105 ; 1.097 ; 1.225 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1106 ; 1.097 ; 1.225 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1599 ; 1.782 ; 1.782 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2678 ; 6.715 ;10.354 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2679 ; 6.714 ;10.356 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 58 A 76 REMARK 3 ORIGIN FOR THE GROUP (A): 15.4240 19.3420 34.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.1767 T22: 0.1317 REMARK 3 T33: 0.1167 T12: -0.0095 REMARK 3 T13: 0.0193 T23: -0.0888 REMARK 3 L TENSOR REMARK 3 L11: 9.3332 L22: 3.0322 REMARK 3 L33: 4.2366 L12: 2.6912 REMARK 3 L13: 1.6052 L23: -1.2655 REMARK 3 S TENSOR REMARK 3 S11: 0.2016 S12: -1.0242 S13: 0.6422 REMARK 3 S21: 0.4598 S22: -0.2896 S23: 0.0124 REMARK 3 S31: -0.5676 S32: -0.0778 S33: 0.0879 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 77 A 88 REMARK 3 ORIGIN FOR THE GROUP (A): 6.8930 7.9230 29.7890 REMARK 3 T TENSOR REMARK 3 T11: 0.1150 T22: 0.1606 REMARK 3 T33: 0.2186 T12: -0.0212 REMARK 3 T13: 0.1550 T23: -0.0349 REMARK 3 L TENSOR REMARK 3 L11: 5.8180 L22: 1.2432 REMARK 3 L33: 3.1620 L12: 0.5126 REMARK 3 L13: -1.3257 L23: -1.6813 REMARK 3 S TENSOR REMARK 3 S11: -0.0139 S12: -0.3067 S13: -0.0737 REMARK 3 S21: 0.2420 S22: 0.1691 S23: 0.3579 REMARK 3 S31: -0.0924 S32: -0.4433 S33: -0.1551 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 89 A 99 REMARK 3 ORIGIN FOR THE GROUP (A): 5.8730 9.3520 22.5330 REMARK 3 T TENSOR REMARK 3 T11: 0.0138 T22: 0.1488 REMARK 3 T33: 0.1426 T12: -0.0080 REMARK 3 T13: 0.0225 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 2.4996 L22: 8.5177 REMARK 3 L33: 5.9872 L12: -1.4391 REMARK 3 L13: 1.1980 L23: -6.1066 REMARK 3 S TENSOR REMARK 3 S11: 0.0380 S12: -0.0811 S13: 0.0951 REMARK 3 S21: -0.0225 S22: 0.1088 S23: 0.2741 REMARK 3 S31: -0.0202 S32: -0.2763 S33: -0.1468 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 100 A 107 REMARK 3 ORIGIN FOR THE GROUP (A): 8.8080 21.1670 15.3780 REMARK 3 T TENSOR REMARK 3 T11: 0.1061 T22: 0.0401 REMARK 3 T33: 0.1963 T12: 0.0578 REMARK 3 T13: 0.0190 T23: 0.0192 REMARK 3 L TENSOR REMARK 3 L11: 8.2453 L22: 8.3889 REMARK 3 L33: 6.0533 L12: 6.7441 REMARK 3 L13: -0.4611 L23: 0.3321 REMARK 3 S TENSOR REMARK 3 S11: 0.1825 S12: -0.0425 S13: 0.6197 REMARK 3 S21: -0.1206 S22: -0.1239 S23: 0.7225 REMARK 3 S31: -0.2501 S32: -0.2619 S33: -0.0586 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 108 A 121 REMARK 3 ORIGIN FOR THE GROUP (A): 15.3020 11.5570 11.4320 REMARK 3 T TENSOR REMARK 3 T11: 0.0720 T22: 0.1400 REMARK 3 T33: 0.1331 T12: 0.0418 REMARK 3 T13: 0.0286 T23: 0.0187 REMARK 3 L TENSOR REMARK 3 L11: 0.5515 L22: 2.3130 REMARK 3 L33: 1.6284 L12: -0.4256 REMARK 3 L13: 0.2977 L23: -0.1846 REMARK 3 S TENSOR REMARK 3 S11: 0.1020 S12: 0.1697 S13: 0.0017 REMARK 3 S21: -0.0870 S22: -0.0113 S23: 0.0424 REMARK 3 S31: -0.0624 S32: -0.2398 S33: -0.0907 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 122 A 129 REMARK 3 ORIGIN FOR THE GROUP (A): 5.0330 10.4570 12.8530 REMARK 3 T TENSOR REMARK 3 T11: 0.0217 T22: 0.1791 REMARK 3 T33: 0.1521 T12: 0.0213 REMARK 3 T13: 0.0053 T23: 0.0235 REMARK 3 L TENSOR REMARK 3 L11: 2.2110 L22: 7.3330 REMARK 3 L33: 8.2237 L12: 1.3459 REMARK 3 L13: 1.0905 L23: -4.8161 REMARK 3 S TENSOR REMARK 3 S11: -0.0228 S12: 0.0919 S13: 0.0710 REMARK 3 S21: 0.0751 S22: 0.2217 S23: 0.3907 REMARK 3 S31: 0.0378 S32: -0.5607 S33: -0.1989 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 130 A 151 REMARK 3 ORIGIN FOR THE GROUP (A): 16.8300 7.8700 6.3530 REMARK 3 T TENSOR REMARK 3 T11: 0.0807 T22: 0.0946 REMARK 3 T33: 0.1414 T12: 0.0146 REMARK 3 T13: 0.0059 T23: 0.0202 REMARK 3 L TENSOR REMARK 3 L11: 0.8227 L22: 2.4463 REMARK 3 L33: 1.2711 L12: -1.1601 REMARK 3 L13: -0.2627 L23: -0.0152 REMARK 3 S TENSOR REMARK 3 S11: 0.0644 S12: 0.1545 S13: -0.0930 REMARK 3 S21: -0.0499 S22: -0.0198 S23: 0.1217 REMARK 3 S31: -0.1429 S32: -0.0965 S33: -0.0445 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 152 A 167 REMARK 3 ORIGIN FOR THE GROUP (A): 10.7650 10.1970 5.2000 REMARK 3 T TENSOR REMARK 3 T11: 0.0841 T22: 0.1964 REMARK 3 T33: 0.0999 T12: 0.0236 REMARK 3 T13: -0.0404 T23: 0.0128 REMARK 3 L TENSOR REMARK 3 L11: 2.8579 L22: 6.0102 REMARK 3 L33: 2.2159 L12: -1.9254 REMARK 3 L13: -1.0287 L23: -2.1989 REMARK 3 S TENSOR REMARK 3 S11: 0.1493 S12: 0.3641 S13: -0.1422 REMARK 3 S21: -0.2941 S22: -0.0876 S23: 0.2875 REMARK 3 S31: 0.0005 S32: -0.2903 S33: -0.0617 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 168 A 177 REMARK 3 ORIGIN FOR THE GROUP (A): 23.9840 5.3670 3.8830 REMARK 3 T TENSOR REMARK 3 T11: 0.1177 T22: 0.0992 REMARK 3 T33: 0.1083 T12: -0.0110 REMARK 3 T13: -0.0210 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 1.3832 L22: 1.1364 REMARK 3 L33: 2.2080 L12: -0.8222 REMARK 3 L13: -1.0344 L23: -0.2674 REMARK 3 S TENSOR REMARK 3 S11: 0.0992 S12: 0.1773 S13: -0.0920 REMARK 3 S21: -0.1216 S22: -0.0900 S23: 0.0276 REMARK 3 S31: -0.0604 S32: -0.0862 S33: -0.0092 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 178 A 190 REMARK 3 ORIGIN FOR THE GROUP (A): 36.5620 4.2770 2.8120 REMARK 3 T TENSOR REMARK 3 T11: 0.0395 T22: 0.1452 REMARK 3 T33: 0.1061 T12: -0.0195 REMARK 3 T13: -0.0082 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 1.8983 L22: 8.8816 REMARK 3 L33: 7.1742 L12: -3.1512 REMARK 3 L13: 2.3794 L23: -3.7862 REMARK 3 S TENSOR REMARK 3 S11: 0.0125 S12: 0.0805 S13: 0.1955 REMARK 3 S21: -0.0965 S22: -0.1199 S23: -0.2435 REMARK 3 S31: -0.0670 S32: 0.4146 S33: 0.1073 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 191 A 203 REMARK 3 ORIGIN FOR THE GROUP (A): 27.2100 16.0160 3.8350 REMARK 3 T TENSOR REMARK 3 T11: 0.1382 T22: 0.0915 REMARK 3 T33: 0.1583 T12: -0.0343 REMARK 3 T13: 0.0532 T23: 0.0367 REMARK 3 L TENSOR REMARK 3 L11: 2.5122 L22: 6.8087 REMARK 3 L33: 9.2414 L12: -4.0158 REMARK 3 L13: -2.8996 L23: 5.2859 REMARK 3 S TENSOR REMARK 3 S11: 0.1395 S12: 0.1162 S13: 0.0917 REMARK 3 S21: -0.1277 S22: -0.0448 S23: 0.0437 REMARK 3 S31: -0.3767 S32: 0.1331 S33: -0.0948 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 204 A 211 REMARK 3 ORIGIN FOR THE GROUP (A): 19.0930 10.0400 18.8620 REMARK 3 T TENSOR REMARK 3 T11: 0.1551 T22: 0.0532 REMARK 3 T33: 0.1719 T12: -0.0000 REMARK 3 T13: 0.0536 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 1.0866 L22: 0.7709 REMARK 3 L33: 1.3988 L12: -0.2245 REMARK 3 L13: -1.0532 L23: 0.5689 REMARK 3 S TENSOR REMARK 3 S11: 0.0772 S12: 0.0168 S13: 0.0312 REMARK 3 S21: 0.1609 S22: 0.0302 S23: 0.1352 REMARK 3 S31: -0.1194 S32: 0.0262 S33: -0.1074 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 212 A 226 REMARK 3 ORIGIN FOR THE GROUP (A): 23.9920 -6.6620 17.8490 REMARK 3 T TENSOR REMARK 3 T11: 0.1126 T22: 0.0800 REMARK 3 T33: 0.1391 T12: -0.0462 REMARK 3 T13: 0.0278 T23: -0.0126 REMARK 3 L TENSOR REMARK 3 L11: 3.3412 L22: 0.2938 REMARK 3 L33: 1.8424 L12: 0.1538 REMARK 3 L13: 1.4188 L23: 0.4321 REMARK 3 S TENSOR REMARK 3 S11: -0.0521 S12: 0.0604 S13: -0.2734 REMARK 3 S21: 0.0152 S22: -0.0773 S23: 0.0412 REMARK 3 S31: 0.1521 S32: -0.2298 S33: 0.1293 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 227 A 233 REMARK 3 ORIGIN FOR THE GROUP (A): 31.4740 -7.5940 21.8100 REMARK 3 T TENSOR REMARK 3 T11: 0.0792 T22: 0.0458 REMARK 3 T33: 0.1376 T12: 0.0018 REMARK 3 T13: -0.0035 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 6.1033 L22: 5.3110 REMARK 3 L33: 11.0406 L12: -3.7654 REMARK 3 L13: -5.6150 L23: 1.7462 REMARK 3 S TENSOR REMARK 3 S11: -0.1944 S12: 0.0256 S13: -0.1436 REMARK 3 S21: 0.0262 S22: -0.1115 S23: 0.1629 REMARK 3 S31: 0.1871 S32: 0.2738 S33: 0.3059 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 234 A 247 REMARK 3 ORIGIN FOR THE GROUP (A): 28.5360 3.0810 23.1080 REMARK 3 T TENSOR REMARK 3 T11: 0.0848 T22: 0.1105 REMARK 3 T33: 0.0985 T12: 0.0010 REMARK 3 T13: 0.0048 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 3.4115 L22: 1.7549 REMARK 3 L33: 1.8004 L12: -1.2960 REMARK 3 L13: 2.1645 L23: -0.5335 REMARK 3 S TENSOR REMARK 3 S11: 0.0132 S12: -0.1669 S13: -0.0005 REMARK 3 S21: 0.0788 S22: 0.1217 S23: 0.0323 REMARK 3 S31: -0.0366 S32: -0.0127 S33: -0.1350 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 248 A 264 REMARK 3 ORIGIN FOR THE GROUP (A): 33.8510 5.3060 17.3820 REMARK 3 T TENSOR REMARK 3 T11: 0.0759 T22: 0.1317 REMARK 3 T33: 0.1000 T12: -0.0215 REMARK 3 T13: 0.0026 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 1.7066 L22: 1.6350 REMARK 3 L33: 1.4785 L12: -1.4870 REMARK 3 L13: 0.1624 L23: 0.1905 REMARK 3 S TENSOR REMARK 3 S11: -0.0406 S12: -0.0388 S13: 0.0371 REMARK 3 S21: 0.0359 S22: -0.0011 S23: 0.0078 REMARK 3 S31: -0.0510 S32: 0.2425 S33: 0.0418 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 265 A 270 REMARK 3 ORIGIN FOR THE GROUP (A): 29.5270 16.6730 18.0950 REMARK 3 T TENSOR REMARK 3 T11: 0.1111 T22: 0.1080 REMARK 3 T33: 0.1288 T12: -0.0954 REMARK 3 T13: 0.0255 T23: -0.0225 REMARK 3 L TENSOR REMARK 3 L11: 4.3763 L22: 3.4976 REMARK 3 L33: 7.9806 L12: -0.3477 REMARK 3 L13: -1.8758 L23: 3.3939 REMARK 3 S TENSOR REMARK 3 S11: 0.0100 S12: -0.3246 S13: 0.0561 REMARK 3 S21: 0.0782 S22: 0.0593 S23: 0.0170 REMARK 3 S31: -0.3943 S32: 0.5602 S33: -0.0692 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 271 A 277 REMARK 3 ORIGIN FOR THE GROUP (A): 18.9190 18.4200 18.9270 REMARK 3 T TENSOR REMARK 3 T11: 0.1729 T22: 0.0123 REMARK 3 T33: 0.1884 T12: 0.0270 REMARK 3 T13: -0.0004 T23: 0.0149 REMARK 3 L TENSOR REMARK 3 L11: 2.3439 L22: 5.0689 REMARK 3 L33: 6.0385 L12: 3.2851 REMARK 3 L13: -0.9256 L23: -0.4465 REMARK 3 S TENSOR REMARK 3 S11: 0.1716 S12: -0.0253 S13: 0.1912 REMARK 3 S21: 0.0378 S22: -0.0183 S23: 0.4740 REMARK 3 S31: -0.5423 S32: -0.0155 S33: -0.1532 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 278 A 295 REMARK 3 ORIGIN FOR THE GROUP (A): 21.7670 8.0720 28.5260 REMARK 3 T TENSOR REMARK 3 T11: 0.0842 T22: 0.0833 REMARK 3 T33: 0.0944 T12: 0.0152 REMARK 3 T13: 0.0104 T23: -0.0265 REMARK 3 L TENSOR REMARK 3 L11: 5.1499 L22: 3.1878 REMARK 3 L33: 2.3882 L12: 2.2535 REMARK 3 L13: -0.7613 L23: -1.2635 REMARK 3 S TENSOR REMARK 3 S11: -0.0637 S12: -0.3654 S13: 0.1545 REMARK 3 S21: 0.1970 S22: -0.0041 S23: 0.0909 REMARK 3 S31: -0.0478 S32: 0.0009 S33: 0.0678 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 296 A 311 REMARK 3 ORIGIN FOR THE GROUP (A): 14.5260 11.9650 32.3950 REMARK 3 T TENSOR REMARK 3 T11: 0.1016 T22: 0.2069 REMARK 3 T33: 0.1093 T12: 0.0513 REMARK 3 T13: 0.0321 T23: -0.0639 REMARK 3 L TENSOR REMARK 3 L11: 2.7222 L22: 0.8234 REMARK 3 L33: 4.8894 L12: 1.2300 REMARK 3 L13: -1.4767 L23: -1.1656 REMARK 3 S TENSOR REMARK 3 S11: -0.0187 S12: -0.4940 S13: 0.2897 REMARK 3 S21: 0.0772 S22: -0.0424 S23: 0.1187 REMARK 3 S31: -0.2192 S32: -0.1596 S33: 0.0611 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4OQP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000084830. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : SI(111) CRYSTAL REMARK 200 OPTICS : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 WITH 2 SETS OF RH-SOATED REMARK 200 SILLICON AND GLASS MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34660 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 62.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.25500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3NZE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.08 M HEPES, 9.6% (W/V) PEG 3350, 4 REMARK 280 MM COCL2, 4 MM CDCL2, 4 MM MGCL2, AND 4 MM NICL2; 16.5 MG/ML REMARK 280 PROTEIN IN 20 MM TRISODIUM CITRATE PH 7.0, 150 MM NACL, 0.02% (V/ REMARK 280 V) 2-MERCAPTOETHANOL, 50 MM DEOXYRIBOSE-5-PHOSPHATE; PROTEIN: REMARK 280 RESERVOIR 2:1, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K, REMARK 280 PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.66900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.66900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 38.49750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.49150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 38.49750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.49150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 45.66900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 38.49750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 39.49150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 45.66900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 38.49750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 39.49150 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -75.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 503 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 607 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 612 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 632 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 50 REMARK 465 ILE A 51 REMARK 465 ASP A 52 REMARK 465 PRO A 53 REMARK 465 PHE A 54 REMARK 465 THR A 55 REMARK 465 ASP A 56 REMARK 465 PRO A 57 REMARK 465 ASP A 312 REMARK 465 LEU A 313 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 115 -156.16 -93.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 THE ORGINAL SUGAR D 2-DEOXYRIBOSE-5-PHOSPHATE WAS COVALENTLY BOUND REMARK 600 TO LYS141 BY SCHIFF BASE. THE PRODUCT 3,4-DIHYDROXY-5-(PHOSPHONOOXY) REMARK 600 PENTANE-LYS ADDUCT WAS OBTAINED. NZ LYS A 141 - C1' PED A 401 BOND REMARK 600 REPRESENTS A DOUBLE BOND REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 406 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 78 ND1 REMARK 620 2 TYR A 97 OH 91.6 REMARK 620 3 GLU A 226 OE1 47.7 73.3 REMARK 620 4 GLU A 226 OE2 45.9 74.4 1.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 406 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 78 ND1 REMARK 620 2 TYR A 97 OH 93.6 REMARK 620 3 GLU A 226 OE1 46.5 70.5 REMARK 620 4 GLU A 226 OE2 45.5 72.4 1.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 407 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 93 OD1 REMARK 620 2 ASP A 93 OD2 54.6 REMARK 620 3 HOH A 704 O 86.9 87.8 REMARK 620 4 HOH A 705 O 157.4 110.3 74.9 REMARK 620 5 HOH A 715 O 94.0 91.8 178.5 103.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 402 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 146 ND1 REMARK 620 2 ASP A 189 OD1 51.1 REMARK 620 3 ASP A 189 OD2 52.7 5.8 REMARK 620 4 HIS A 191 ND1 44.9 6.9 8.2 REMARK 620 5 HOH A 540 O 46.3 13.6 9.9 9.3 REMARK 620 6 HOH A 700 O 52.1 7.8 2.3 8.4 7.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 403 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 304 ND1 REMARK 620 2 HOH A 742 O 88.9 REMARK 620 3 HOH A 743 O 106.1 164.4 REMARK 620 4 HOH A 756 O 96.4 75.2 98.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PED A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 407 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4OQQ RELATED DB: PDB DBREF 4OQP A 56 313 UNP P39140 DEOR_BACSU 56 313 SEQADV 4OQP GLY A 50 UNP P39140 EXPRESSION TAG SEQADV 4OQP ILE A 51 UNP P39140 EXPRESSION TAG SEQADV 4OQP ASP A 52 UNP P39140 EXPRESSION TAG SEQADV 4OQP PRO A 53 UNP P39140 EXPRESSION TAG SEQADV 4OQP PHE A 54 UNP P39140 EXPRESSION TAG SEQADV 4OQP THR A 55 UNP P39140 EXPRESSION TAG SEQRES 1 A 264 GLY ILE ASP PRO PHE THR ASP PRO PHE GLU ASP LEU ASP SEQRES 2 A 264 ALA LEU GLY SER ILE LEU GLU GLU LYS TYR GLY LEU LEU SEQRES 3 A 264 GLU ALA HIS VAL VAL PHE SER PRO THR PRO ASP TYR ALA SEQRES 4 A 264 GLY ILE THR HIS ASP LEU SER ARG TYR GLY ALA GLU TYR SEQRES 5 A 264 MET HIS GLU THR VAL LYS ASP GLY ASP ILE VAL GLY VAL SEQRES 6 A 264 SER TRP GLY THR THR MET TYR GLN ILE ALA GLN ASN MET SEQRES 7 A 264 GLN PRO LYS GLN VAL LYS GLY VAL GLU VAL VAL GLN LEU SEQRES 8 A 264 LYS GLY GLY ILE SER HIS SER ARG VAL ASN THR TYR SER SEQRES 9 A 264 ALA GLU THR ILE GLN LEU PHE ALA GLU ALA PHE GLN THR SEQRES 10 A 264 MET PRO ARG TYR LEU PRO LEU PRO VAL VAL PHE ASP ASN SEQRES 11 A 264 ALA ASP VAL LYS ARG MET VAL GLU LYS ASP ARG HIS ILE SEQRES 12 A 264 GLU ARG ILE ILE GLU MET GLY LYS GLN ALA ASN ILE ALA SEQRES 13 A 264 LEU PHE THR VAL GLY THR VAL ARG ASP GLU ALA LEU LEU SEQRES 14 A 264 PHE ARG LEU GLY TYR PHE ASN GLU GLU GLU LYS ALA LEU SEQRES 15 A 264 LEU LYS LYS GLN ALA VAL GLY ASP ILE CYS SER ARG PHE SEQRES 16 A 264 PHE ASP ALA LYS GLY ASN ILE CYS SER SER ALA ILE ASN SEQRES 17 A 264 ASP ARG THR ILE GLY VAL GLU LEU GLN ASP LEU ARG LEU SEQRES 18 A 264 LYS GLU ARG SER ILE LEU VAL ALA GLY GLY SER ARG LYS SEQRES 19 A 264 VAL SER SER ILE HIS GLY ALA LEU THR GLY LYS TYR ALA SEQRES 20 A 264 ASN VAL LEU ILE ILE ASP GLN HIS THR ALA ARG ALA LEU SEQRES 21 A 264 VAL ASN ASP LEU HET PED A 401 12 HET CD A 402 1 HET NI A 403 1 HET NI A 404 1 HET NI A 405 1 HET CO A 406 2 HET MG A 407 1 HETNAM PED PENTANE-3,4-DIOL-5-PHOSPHATE HETNAM CD CADMIUM ION HETNAM NI NICKEL (II) ION HETNAM CO COBALT (II) ION HETNAM MG MAGNESIUM ION HETSYN PED OPEN FORM OF 1'-2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE FORMUL 2 PED C5 H13 O6 P FORMUL 3 CD CD 2+ FORMUL 4 NI 3(NI 2+) FORMUL 7 CO CO 2+ FORMUL 8 MG MG 2+ FORMUL 9 HOH *264(H2 O) HELIX 1 1 ASP A 60 GLY A 73 1 14 HELIX 2 2 ASP A 86 VAL A 106 1 21 HELIX 3 3 GLY A 117 MET A 127 1 11 HELIX 4 4 TYR A 152 PHE A 164 1 13 HELIX 5 5 ASN A 179 LYS A 188 1 10 HELIX 6 6 ASP A 189 ALA A 202 1 14 HELIX 7 7 ALA A 216 ARG A 220 5 5 HELIX 8 8 ASN A 225 ALA A 236 1 12 HELIX 9 9 SER A 253 ASP A 258 1 6 HELIX 10 10 GLU A 264 ARG A 269 1 6 HELIX 11 11 GLY A 280 ARG A 282 5 3 HELIX 12 12 LYS A 283 GLY A 293 1 11 HELIX 13 13 GLN A 303 ASN A 311 1 9 SHEET 1 A 7 GLU A 76 VAL A 80 0 SHEET 2 A 7 VAL A 298 ASP A 302 1 O ILE A 301 N VAL A 80 SHEET 3 A 7 ARG A 273 VAL A 277 1 N LEU A 276 O VAL A 298 SHEET 4 A 7 ILE A 204 PHE A 207 1 N ALA A 205 O ILE A 275 SHEET 5 A 7 ILE A 111 VAL A 114 1 N GLY A 113 O ILE A 204 SHEET 6 A 7 GLU A 136 GLN A 139 1 O GLU A 136 N VAL A 112 SHEET 7 A 7 PRO A 168 ARG A 169 1 O ARG A 169 N GLN A 139 SHEET 1 B 2 GLY A 238 ILE A 240 0 SHEET 2 B 2 ARG A 243 PHE A 245 -1 O PHE A 245 N GLY A 238 LINK NZ LYS A 141 C1' PED A 401 1555 1555 1.29 LINK ND1 HIS A 78 CO A CO A 406 1555 7555 2.26 LINK ND1 HIS A 78 CO B CO A 406 1555 7555 2.45 LINK OD1 ASP A 93 MG MG A 407 1555 1555 2.37 LINK OD2 ASP A 93 MG MG A 407 1555 1555 2.44 LINK OH ATYR A 97 CO A CO A 406 1555 7555 2.67 LINK OH BTYR A 97 CO B CO A 406 1555 7555 2.69 LINK NE2 HIS A 103 NI NI A 404 1555 1555 2.53 LINK ND1 HIS A 146 CD CD A 402 1555 4555 2.32 LINK OD1 ASP A 189 CD CD A 402 1555 1555 2.39 LINK OD2 ASP A 189 CD CD A 402 1555 1555 2.38 LINK ND1 HIS A 191 CD CD A 402 1555 1555 2.25 LINK OE1 GLU A 226 CO A CO A 406 1555 1555 2.63 LINK OE1 GLU A 226 CO B CO A 406 1555 1555 2.39 LINK OE2 GLU A 226 CO A CO A 406 1555 1555 2.29 LINK OE2 GLU A 226 CO B CO A 406 1555 1555 2.41 LINK NE2 HIS A 288 NI NI A 405 1555 1555 2.61 LINK ND1 HIS A 304 NI NI A 403 1555 1555 2.41 LINK CD CD A 402 O HOH A 540 1555 1555 2.39 LINK CD CD A 402 O HOH A 700 1555 1555 2.34 LINK NI NI A 403 O HOH A 742 1555 1555 2.19 LINK NI NI A 403 O HOH A 743 1555 1555 2.24 LINK NI NI A 403 O HOH A 756 1555 1555 2.58 LINK MG MG A 407 O HOH A 704 1555 1555 2.20 LINK MG MG A 407 O HOH A 705 1555 3555 2.32 LINK MG MG A 407 O HOH A 715 1555 3555 2.06 SITE 1 AC1 15 SER A 115 TRP A 116 THR A 118 THR A 119 SITE 2 AC1 15 LYS A 141 THR A 208 GLY A 210 LEU A 218 SITE 3 AC1 15 ASP A 239 LYS A 283 HOH A 501 HOH A 505 SITE 4 AC1 15 HOH A 614 HOH A 640 HOH A 701 SITE 1 AC2 5 HIS A 146 ASP A 189 HIS A 191 HOH A 540 SITE 2 AC2 5 HOH A 700 SITE 1 AC3 4 HIS A 304 HOH A 742 HOH A 743 HOH A 756 SITE 1 AC4 1 HIS A 103 SITE 1 AC5 1 HIS A 288 SITE 1 AC6 3 HIS A 78 TYR A 97 GLU A 226 SITE 1 AC7 5 HIS A 92 ASP A 93 HOH A 704 HOH A 705 SITE 2 AC7 5 HOH A 715 CRYST1 76.995 78.983 91.338 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012988 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012661 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010948 0.00000