HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 10-FEB-14 4OQR TITLE STRUCTURE OF A CYP105AS1 MUTANT IN COMPLEX WITH COMPACTIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYP105AS1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AMYCOLATOPSIS ORIENTALIS; SOURCE 3 ORGANISM_TAXID: 31958; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CYTOCHROME P450, MONOOXYGENASE, OXIDOREDUCTASE-OXIDOREDUCTASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.LEYS REVDAT 5 03-APR-24 4OQR 1 REMARK REVDAT 4 28-FEB-24 4OQR 1 REMARK HETSYN REVDAT 3 26-JUL-17 4OQR 1 COMPND REMARK FORMUL REVDAT 2 01-APR-15 4OQR 1 JRNL REVDAT 1 18-FEB-15 4OQR 0 JRNL AUTH K.J.MCLEAN,M.HANS,B.MEIJRINK,W.B.VAN SCHEPPINGEN, JRNL AUTH 2 A.VOLLEBREGT,K.L.TEE,J.M.VAN DER LAAN,D.LEYS,A.W.MUNRO, JRNL AUTH 3 M.A.VAN DEN BERG JRNL TITL SINGLE-STEP FERMENTATIVE PRODUCTION OF THE JRNL TITL 2 CHOLESTEROL-LOWERING DRUG PRAVASTATIN VIA REPROGRAMMING OF JRNL TITL 3 PENICILLIUM CHRYSOGENUM. JRNL REF PROC.NATL.ACAD.SCI.USA V. 112 2847 2015 JRNL REFN ISSN 0027-8424 JRNL PMID 25691737 JRNL DOI 10.1073/PNAS.1419028112 REMARK 2 REMARK 2 RESOLUTION. 1.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 42324 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2248 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.81 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.86 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3064 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE SET COUNT : 170 REMARK 3 BIN FREE R VALUE : 0.3180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3008 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 71 REMARK 3 SOLVENT ATOMS : 398 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.69000 REMARK 3 B22 (A**2) : -0.20000 REMARK 3 B33 (A**2) : 0.89000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.113 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.115 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.073 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.345 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3181 ; 0.027 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2173 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4354 ; 2.031 ; 2.031 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5294 ; 1.100 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 388 ; 6.488 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 133 ;30.559 ;23.008 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 510 ;12.842 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;20.980 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 496 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3486 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 618 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1951 ; 1.257 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 767 ; 0.432 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3174 ; 2.062 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1230 ; 3.214 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1180 ; 4.956 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4OQR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000084832. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42324 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.810 REMARK 200 RESOLUTION RANGE LOW (A) : 46.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.32500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: WT STRUCTURE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BIS-TRIS PROPANE AT PH 6.5, 200 REMARK 280 MM SODIUM BROMIDE AND 22.5% PEG 3350 (W/V), VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.68000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.81500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.40500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.81500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.68000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.40500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -38 REMARK 465 GLY A -37 REMARK 465 GLY A -36 REMARK 465 SER A -35 REMARK 465 HIS A -34 REMARK 465 HIS A -33 REMARK 465 HIS A -32 REMARK 465 HIS A -31 REMARK 465 HIS A -30 REMARK 465 HIS A -29 REMARK 465 GLY A -28 REMARK 465 MET A -27 REMARK 465 ALA A -26 REMARK 465 SER A -25 REMARK 465 MET A -24 REMARK 465 THR A -23 REMARK 465 GLY A -22 REMARK 465 GLY A -21 REMARK 465 GLN A -20 REMARK 465 GLN A -19 REMARK 465 MET A -18 REMARK 465 GLY A -17 REMARK 465 ARG A -16 REMARK 465 ASP A -15 REMARK 465 LEU A -14 REMARK 465 TYR A -13 REMARK 465 ASP A -12 REMARK 465 ASP A -11 REMARK 465 ASP A -10 REMARK 465 ASP A -9 REMARK 465 LYS A -8 REMARK 465 ASP A -7 REMARK 465 ARG A -6 REMARK 465 TRP A -5 REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 465 GLU A -2 REMARK 465 LEU A -1 REMARK 465 GLU A 0 REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 VAL A 3 REMARK 465 ASP A 4 REMARK 465 SER A 5 REMARK 465 GLU A 6 REMARK 465 ASN A 7 REMARK 465 MET A 8 REMARK 465 ASN A 9 REMARK 465 GLU A 10 REMARK 465 GLY A 83 REMARK 465 GLY A 84 REMARK 465 ALA A 85 REMARK 465 THR A 86 REMARK 465 LYS A 87 REMARK 465 LEU A 402 REMARK 465 GLY A 403 REMARK 465 ILE A 404 REMARK 465 ARG A 405 REMARK 465 SER A 406 REMARK 465 LEU A 407 REMARK 465 ALA A 408 REMARK 465 VAL A 409 REMARK 465 LEU A 410 REMARK 465 ALA A 411 REMARK 465 ASP A 412 REMARK 465 GLU A 413 REMARK 465 ARG A 414 REMARK 465 ARG A 415 REMARK 465 PHE A 416 REMARK 465 SER A 417 REMARK 465 ALA A 418 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 130 CD GLU A 130 OE2 -0.078 REMARK 500 GLU A 261 CD GLU A 261 OE1 0.078 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 39 CG - SD - CE ANGL. DEV. = -13.4 DEGREES REMARK 500 ARG A 116 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 116 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 GLU A 130 CG - CD - OE1 ANGL. DEV. = 12.2 DEGREES REMARK 500 ARG A 317 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 336 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 368 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 373 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 16 -25.44 -141.64 REMARK 500 PHE A 149 -57.21 -153.56 REMARK 500 GLU A 298 -128.90 53.80 REMARK 500 LYS A 304 125.92 -37.34 REMARK 500 CYS A 348 119.14 -37.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 299 GLN A 300 -142.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 935 DISTANCE = 6.69 ANGSTROMS REMARK 525 HOH A 936 DISTANCE = 8.71 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 348 SG REMARK 620 2 HEM A 501 NA 102.7 REMARK 620 3 HEM A 501 NB 89.5 91.1 REMARK 620 4 HEM A 501 NC 86.9 170.4 88.3 REMARK 620 5 HEM A 501 ND 101.6 86.9 168.9 91.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2UO A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4OQS RELATED DB: PDB DBREF 4OQR A -38 418 PDB 4OQR 4OQR -38 418 SEQRES 1 A 457 MET GLY GLY SER HIS HIS HIS HIS HIS HIS GLY MET ALA SEQRES 2 A 457 SER MET THR GLY GLY GLN GLN MET GLY ARG ASP LEU TYR SEQRES 3 A 457 ASP ASP ASP ASP LYS ASP ARG TRP GLY SER GLU LEU GLU SEQRES 4 A 457 MET ARG VAL ASP SER GLU ASN MET ASN GLU PRO VAL THR SEQRES 5 A 457 LEU PRO THR GLY ARG ALA VAL GLY TYR PRO PHE ASP PRO SEQRES 6 A 457 PRO PRO ASP LEU VAL LYS LEU PRO PRO VAL SER PRO MET SEQRES 7 A 457 ARG PHE PRO ASP GLY HIS ILE GLY TRP LEU VAL THR SER SEQRES 8 A 457 HIS ALA ALA ALA ARG THR VAL MET ILE ASP PRO ARG PHE SEQRES 9 A 457 SER ASN ARG PRO GLU HIS LYS HIS PRO VAL PHE SER VAL SEQRES 10 A 457 ILE PRO ARG PRO GLY GLY ALA THR LYS ALA PRO ALA PRO SEQRES 11 A 457 GLY TRP PHE THR ASN MET ASP ALA PRO GLU HIS THR ARG SEQRES 12 A 457 TYR ARG ARG MET LEU ILE SER GLN PHE THR VAL ARG ARG SEQRES 13 A 457 ILE LYS GLU LEU GLU PRO ARG ILE VAL ARG ILE THR GLU SEQRES 14 A 457 ASP HIS LEU ASP ALA MET ALA LYS ALA GLY PRO PRO VAL SEQRES 15 A 457 ASP LEU VAL GLN ALA PHE ALA LEU PRO VAL PRO SER LEU SEQRES 16 A 457 VAL ILE CYS GLU LEU LEU GLY VAL SER TYR ALA ASP HIS SEQRES 17 A 457 ALA PHE PHE GLN GLU GLN THR THR ILE MET VAL SER VAL SEQRES 18 A 457 ASP LYS THR GLN ASP GLU VAL THR THR ALA LEU GLY LYS SEQRES 19 A 457 LEU THR ARG TYR ILE ALA GLU LEU VAL ALA THR LYS ARG SEQRES 20 A 457 LEU SER PRO LYS ASP ASP LEU LEU GLY SER LEU ILE THR SEQRES 21 A 457 ASP THR ASP LEU THR ASP GLU GLU LEU THR ASN ILE ALA SEQRES 22 A 457 LEU ILE LEU LEU VAL ALA GLY HIS GLU THR THR ALA ASN SEQRES 23 A 457 MET LEU GLY LEU GLY THR PHE ALA LEU LEU GLN HIS PRO SEQRES 24 A 457 GLU GLN ILE ALA ASN LEU ASP SER PRO ASP ALA VAL GLU SEQRES 25 A 457 GLU LEU LEU ARG TYR LEU SER ILE VAL HIS LEU GLY THR SEQRES 26 A 457 PRO ASN ARG ALA ALA LEU GLU ASP VAL GLU LEU GLU GLY SEQRES 27 A 457 GLN MET ILE ARG LYS GLY ASP THR VAL ALA ILE GLY LEU SEQRES 28 A 457 PRO ALA VAL ASN ARG ASP PRO LYS VAL PHE ASP GLU PRO SEQRES 29 A 457 ASP ILE LEU GLN LEU ASP ARG VAL ASP ALA ARG LYS HIS SEQRES 30 A 457 ALA ALA PHE GLY GLY GLY ILE HIS GLN CYS LEU GLY GLN SEQRES 31 A 457 GLN LEU ALA ARG VAL GLU MET ARG ILE GLY PHE THR ARG SEQRES 32 A 457 LEU PHE ALA ARG PHE PRO SER LEU ARG LEU ALA VAL PRO SEQRES 33 A 457 ALA GLU GLU ILE LYS LEU ARG GLU LYS SER ALA ALA TYR SEQRES 34 A 457 GLY VAL TRP ALA LEU PRO VAL ALA TRP ASP ALA LEU GLY SEQRES 35 A 457 ILE ARG SER LEU ALA VAL LEU ALA ASP GLU ARG ARG PHE SEQRES 36 A 457 SER ALA HET HEM A 501 43 HET 2UO A 502 28 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM 2UO MEVASTATIN, COMPACTIN HETSYN HEM HEME HETSYN 2UO (1S,7S,8S,8AR)-8-{2-[(2R,4R,6R)-4,6- HETSYN 2 2UO DIHYDROXYTETRAHYDRO-2H-PYRAN-2-YL]ETHYL}-7-METHYL-1,2, HETSYN 3 2UO 3,7,8,8A-HEXAHYDRONAPHTHALEN- 1-YL (2S)-2- HETSYN 4 2UO METHYLBUTANOATE FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 2UO C23 H34 O5 FORMUL 4 HOH *398(H2 O) HELIX 1 1 PRO A 27 LYS A 32 1 6 HELIX 2 2 SER A 52 ASP A 62 1 11 HELIX 3 3 TRP A 93 MET A 97 5 5 HELIX 4 4 PRO A 100 SER A 111 1 12 HELIX 5 5 THR A 114 GLY A 140 1 27 HELIX 6 6 LEU A 145 PHE A 149 1 5 HELIX 7 7 LEU A 151 GLY A 163 1 13 HELIX 8 8 SER A 165 ALA A 167 5 3 HELIX 9 9 ASP A 168 SER A 181 1 14 HELIX 10 10 THR A 185 SER A 210 1 26 HELIX 11 11 ASP A 214 THR A 223 1 10 HELIX 12 12 THR A 226 THR A 244 1 19 HELIX 13 13 THR A 244 HIS A 259 1 16 HELIX 14 14 PRO A 260 LEU A 266 5 7 HELIX 15 15 ASP A 270 SER A 280 1 11 HELIX 16 16 GLY A 311 ASN A 316 1 6 HELIX 17 17 ASP A 334 HIS A 338 5 5 HELIX 18 18 GLY A 343 GLN A 347 5 5 HELIX 19 19 GLY A 350 PHE A 369 1 20 HELIX 20 20 PRO A 377 ILE A 381 5 5 SHEET 1 A 5 VAL A 36 ARG A 40 0 SHEET 2 A 5 ILE A 46 VAL A 50 -1 O LEU A 49 N SER A 37 SHEET 3 A 5 THR A 307 ILE A 310 1 O ALA A 309 N TRP A 48 SHEET 4 A 5 ASN A 288 ALA A 291 -1 N ARG A 289 O VAL A 308 SHEET 5 A 5 PHE A 65 SER A 66 -1 N SER A 66 O ALA A 290 SHEET 1 B 3 VAL A 143 ASP A 144 0 SHEET 2 B 3 PRO A 396 ALA A 398 -1 O VAL A 397 N VAL A 143 SHEET 3 B 3 ARG A 373 LEU A 374 -1 N ARG A 373 O ALA A 398 SHEET 1 C 2 VAL A 295 LEU A 297 0 SHEET 2 C 2 GLN A 300 ILE A 302 -1 O ILE A 302 N VAL A 295 LINK SG CYS A 348 FE HEM A 501 1555 1555 2.40 CISPEP 1 ALA A 99 PRO A 100 0 7.75 CISPEP 2 PRO A 141 PRO A 142 0 -9.43 CISPEP 3 THR A 286 PRO A 287 0 -1.03 SITE 1 AC1 22 PHE A 94 THR A 95 HIS A 102 ARG A 106 SITE 2 AC1 22 LEU A 237 ALA A 240 THR A 244 THR A 245 SITE 3 AC1 22 PRO A 287 ARG A 289 ALA A 340 PHE A 341 SITE 4 AC1 22 GLY A 342 HIS A 346 CYS A 348 LEU A 349 SITE 5 AC1 22 GLY A 350 ALA A 354 HOH A 602 HOH A 716 SITE 6 AC1 22 HOH A 724 HOH A 865 SITE 1 AC2 9 PHE A 76 PRO A 80 MET A 179 SER A 181 SITE 2 AC2 9 ILE A 236 ALA A 388 HOH A 836 HOH A 963 SITE 3 AC2 9 HOH A 982 CRYST1 39.360 86.810 139.630 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025407 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011519 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007162 0.00000