HEADER VIRAL PROTEIN 10-FEB-14 4OR4 TITLE STRUCTURE OF INFLUENZA B PB2 CAP-BINDING DOMAIN WITH Q325F MUTATION TITLE 2 COMPLEX WITH M7GDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE BASIC PROTEIN 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CAP-BINDING DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA B VIRUS; SOURCE 3 ORGANISM_TAXID: 11520; SOURCE 4 STRAIN: B/JIANGXI/BV/2006; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS CAP BINDING, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.LIU,J.FAN,X.ZHENG REVDAT 3 08-NOV-23 4OR4 1 REMARK REVDAT 2 25-DEC-19 4OR4 1 JRNL REMARK REVDAT 1 25-FEB-15 4OR4 0 JRNL AUTH Y.LIU,Y.YANG,J.FAN,R.HE,M.LUO,X.ZHENG JRNL TITL THE CRYSTAL STRUCTURE OF THE PB2 CAP-BINDING DOMAIN OF JRNL TITL 2 INFLUENZA B VIRUS REVEALS A NOVEL CAP RECOGNITION MECHANISM. JRNL REF J.BIOL.CHEM. V. 290 9141 2015 JRNL REFN ESSN 1083-351X JRNL PMID 25691568 JRNL DOI 10.1074/JBC.M115.636464 REMARK 2 REMARK 2 RESOLUTION. 2.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 18247 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 980 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.21 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.27 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1260 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.2020 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.3170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2656 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 157 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.265 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.218 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.140 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.422 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2821 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3790 ; 2.213 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 339 ; 6.778 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 148 ;36.856 ;23.716 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 555 ;17.017 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;24.588 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 392 ; 0.162 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2112 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1626 ; 1.140 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2609 ; 2.141 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1195 ; 3.621 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1173 ; 5.677 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4OR4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000084845. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : CRYSTALLOGIC REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19358 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 4.600 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4EQK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.2M AMMONIUM ACETATE, REMARK 280 0.1M TRIS, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.46800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.88700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.34900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.88700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.46800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.34900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 316 REMARK 465 SER A 317 REMARK 465 HIS A 318 REMARK 465 MET A 319 REMARK 465 LYS A 320 REMARK 465 ILE A 321 REMARK 465 GLY B 316 REMARK 465 SER B 317 REMARK 465 HIS B 318 REMARK 465 MET B 319 REMARK 465 LYS B 320 REMARK 465 ILE B 321 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 603 O HOH B 670 4555 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 455 CB GLU A 455 CG 0.145 REMARK 500 GLU A 455 CG GLU A 455 CD 0.127 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 368 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 368 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 459 139.61 -35.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE M7G A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE M7G B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4OR6 RELATED DB: PDB REMARK 900 RELATED ID: 4ORO RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS SEQUENCE IS FROM INFLUENZA B VIRUS (B/JIANGXI/BV/2006) WHICH REMARK 999 WAS NOT SUBMITTED IN UNP. RESIUDES 316-319 ARE THE EXPRESSION TAG. REMARK 999 RESIDUE 325 REPRESENTS MUTATION Q325F. DBREF 4OR4 A 316 484 PDB 4OR4 4OR4 316 484 DBREF 4OR4 B 316 484 PDB 4OR4 4OR4 316 484 SEQRES 1 A 169 GLY SER HIS MET LYS ILE ARG GLN ARG PHE ARG PHE GLY SEQRES 2 A 169 ARG LEU GLU LEU LYS ARG ILE SER GLY ARG GLY PHE LYS SEQRES 3 A 169 ASN ASP GLU GLU ILE LEU ILE GLY ASN GLY THR ILE GLN SEQRES 4 A 169 LYS ILE GLY ILE TRP ASP GLY GLU GLU GLU PHE HIS VAL SEQRES 5 A 169 ARG CYS GLY GLU CYS ARG GLY ILE LEU LYS LYS SER LYS SEQRES 6 A 169 MET LYS LEU GLU LYS LEU LEU ILE ASN SER ALA LYS LYS SEQRES 7 A 169 GLU ASP MET ARG ASP LEU ILE ILE LEU CYS MET VAL PHE SEQRES 8 A 169 SER GLN ASP THR ARG MET PHE GLN GLY VAL ARG GLY GLU SEQRES 9 A 169 ILE ASN PHE LEU ASN ARG ALA GLY GLN LEU LEU SER PRO SEQRES 10 A 169 MET TYR GLN LEU GLN ARG TYR PHE LEU ASN ARG SER SER SEQRES 11 A 169 ASP LEU PHE ASP GLN TRP GLY TYR GLU GLU SER PRO LYS SEQRES 12 A 169 ALA SER GLU LEU HIS GLY ILE ASN GLU SER MET ASN ALA SEQRES 13 A 169 SER ASP TYR THR LEU LYS GLY VAL VAL VAL THR LYS ASN SEQRES 1 B 169 GLY SER HIS MET LYS ILE ARG GLN ARG PHE ARG PHE GLY SEQRES 2 B 169 ARG LEU GLU LEU LYS ARG ILE SER GLY ARG GLY PHE LYS SEQRES 3 B 169 ASN ASP GLU GLU ILE LEU ILE GLY ASN GLY THR ILE GLN SEQRES 4 B 169 LYS ILE GLY ILE TRP ASP GLY GLU GLU GLU PHE HIS VAL SEQRES 5 B 169 ARG CYS GLY GLU CYS ARG GLY ILE LEU LYS LYS SER LYS SEQRES 6 B 169 MET LYS LEU GLU LYS LEU LEU ILE ASN SER ALA LYS LYS SEQRES 7 B 169 GLU ASP MET ARG ASP LEU ILE ILE LEU CYS MET VAL PHE SEQRES 8 B 169 SER GLN ASP THR ARG MET PHE GLN GLY VAL ARG GLY GLU SEQRES 9 B 169 ILE ASN PHE LEU ASN ARG ALA GLY GLN LEU LEU SER PRO SEQRES 10 B 169 MET TYR GLN LEU GLN ARG TYR PHE LEU ASN ARG SER SER SEQRES 11 B 169 ASP LEU PHE ASP GLN TRP GLY TYR GLU GLU SER PRO LYS SEQRES 12 B 169 ALA SER GLU LEU HIS GLY ILE ASN GLU SER MET ASN ALA SEQRES 13 B 169 SER ASP TYR THR LEU LYS GLY VAL VAL VAL THR LYS ASN HET M7G A 501 29 HET M7G B 501 29 HETNAM M7G 7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE FORMUL 3 M7G 2(C11 H19 N5 O11 P2) FORMUL 5 HOH *157(H2 O) HELIX 1 1 LYS A 392 GLN A 408 1 17 HELIX 2 2 ASP A 409 GLY A 415 1 7 HELIX 3 3 SER A 431 ARG A 443 1 13 HELIX 4 4 ARG A 443 GLY A 452 1 10 HELIX 5 5 LYS B 392 SER B 407 1 16 HELIX 6 6 ASP B 409 GLY B 415 1 7 HELIX 7 7 SER B 431 ARG B 443 1 13 HELIX 8 8 SER B 444 GLY B 452 1 9 SHEET 1 A 8 PHE A 325 PHE A 327 0 SHEET 2 A 8 LEU A 330 GLY A 337 -1 O LEU A 332 N PHE A 325 SHEET 3 A 8 GLU A 363 CYS A 369 -1 O GLU A 364 N ILE A 335 SHEET 4 A 8 CYS A 372 SER A 379 -1 O LEU A 376 N PHE A 365 SHEET 5 A 8 LYS A 382 ASN A 389 -1 O LYS A 385 N LYS A 377 SHEET 6 A 8 VAL A 479 THR A 482 1 O VAL A 480 N ILE A 388 SHEET 7 A 8 LEU A 462 ILE A 465 -1 N HIS A 463 O VAL A 481 SHEET 8 A 8 ALA A 471 SER A 472 -1 O SER A 472 N GLY A 464 SHEET 1 B 2 PHE A 340 LEU A 347 0 SHEET 2 B 2 ILE A 353 ASP A 360 -1 O GLN A 354 N ILE A 346 SHEET 1 C 2 TYR A 453 GLU A 455 0 SHEET 2 C 2 TYR A 474 LEU A 476 -1 O THR A 475 N GLU A 454 SHEET 1 D 8 PHE B 325 PHE B 327 0 SHEET 2 D 8 LEU B 330 GLY B 337 -1 O LEU B 330 N PHE B 327 SHEET 3 D 8 GLU B 363 CYS B 369 -1 O HIS B 366 N LYS B 333 SHEET 4 D 8 CYS B 372 SER B 379 -1 O LYS B 378 N GLU B 363 SHEET 5 D 8 LYS B 382 ASN B 389 -1 O LYS B 385 N LYS B 377 SHEET 6 D 8 VAL B 479 THR B 482 1 O THR B 482 N ILE B 388 SHEET 7 D 8 LEU B 462 ILE B 465 -1 N HIS B 463 O VAL B 481 SHEET 8 D 8 ALA B 471 SER B 472 -1 O SER B 472 N GLY B 464 SHEET 1 E 2 PHE B 340 LEU B 347 0 SHEET 2 E 2 ILE B 353 ASP B 360 -1 O GLN B 354 N ILE B 346 SHEET 1 F 2 TYR B 453 GLU B 455 0 SHEET 2 F 2 TYR B 474 LEU B 476 -1 O THR B 475 N GLU B 454 SITE 1 AC1 17 ARG A 326 PHE A 327 ARG A 334 LYS A 341 SITE 2 AC1 17 TRP A 359 GLU A 363 ARG A 368 GLY A 370 SITE 3 AC1 17 PHE A 406 SER A 431 MET A 433 TYR A 434 SITE 4 AC1 17 HOH A 607 HOH A 608 HOH A 609 HOH A 621 SITE 5 AC1 17 HOH A 647 SITE 1 AC2 20 ARG B 326 PHE B 327 ARG B 334 LYS B 341 SITE 2 AC2 20 TRP B 359 GLU B 363 ARG B 368 GLY B 370 SITE 3 AC2 20 LYS B 378 PHE B 406 SER B 431 MET B 433 SITE 4 AC2 20 TYR B 434 HOH B 605 HOH B 613 HOH B 616 SITE 5 AC2 20 HOH B 620 HOH B 628 HOH B 649 HOH B 667 CRYST1 42.936 90.698 95.774 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023290 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011026 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010441 0.00000