data_4ORL # _entry.id 4ORL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4ORL pdb_00004orl 10.2210/pdb4orl/pdb RCSB RCSB084862 ? ? WWPDB D_1000084862 ? ? # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id JCSG-416956 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 4ORL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2014-02-11 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of a hypothetical protein (BACOVA_04304) from Bacteroides ovatus ATCC 8483 at 1.40 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 4ORL _cell.length_a 47.635 _cell.length_b 103.233 _cell.length_c 43.234 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4ORL _symmetry.Int_Tables_number 21 _symmetry.space_group_name_H-M 'C 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Uncharacterized protein' 12468.815 1 ? ? 'UNP residues 22-130' ? 2 non-polymer syn 'DI(HYDROXYETHYL)ETHER' 106.120 1 ? ? ? ? 3 water nat water 18.015 115 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GQEIPAGVITAFKRGSSQELSKY(MSE)GDKVNLVFQGRSTNVDKQKATAA(MSE)QEFFTKNKVSGFNVNHQGKRDESS FVIGTLATTNGNFRVNCFLKKVQNQYLIHQIRIDKINE ; _entity_poly.pdbx_seq_one_letter_code_can ;GQEIPAGVITAFKRGSSQELSKYMGDKVNLVFQGRSTNVDKQKATAAMQEFFTKNKVSGFNVNHQGKRDESSFVIGTLAT TNGNFRVNCFLKKVQNQYLIHQIRIDKINE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier JCSG-416956 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLN n 1 3 GLU n 1 4 ILE n 1 5 PRO n 1 6 ALA n 1 7 GLY n 1 8 VAL n 1 9 ILE n 1 10 THR n 1 11 ALA n 1 12 PHE n 1 13 LYS n 1 14 ARG n 1 15 GLY n 1 16 SER n 1 17 SER n 1 18 GLN n 1 19 GLU n 1 20 LEU n 1 21 SER n 1 22 LYS n 1 23 TYR n 1 24 MSE n 1 25 GLY n 1 26 ASP n 1 27 LYS n 1 28 VAL n 1 29 ASN n 1 30 LEU n 1 31 VAL n 1 32 PHE n 1 33 GLN n 1 34 GLY n 1 35 ARG n 1 36 SER n 1 37 THR n 1 38 ASN n 1 39 VAL n 1 40 ASP n 1 41 LYS n 1 42 GLN n 1 43 LYS n 1 44 ALA n 1 45 THR n 1 46 ALA n 1 47 ALA n 1 48 MSE n 1 49 GLN n 1 50 GLU n 1 51 PHE n 1 52 PHE n 1 53 THR n 1 54 LYS n 1 55 ASN n 1 56 LYS n 1 57 VAL n 1 58 SER n 1 59 GLY n 1 60 PHE n 1 61 ASN n 1 62 VAL n 1 63 ASN n 1 64 HIS n 1 65 GLN n 1 66 GLY n 1 67 LYS n 1 68 ARG n 1 69 ASP n 1 70 GLU n 1 71 SER n 1 72 SER n 1 73 PHE n 1 74 VAL n 1 75 ILE n 1 76 GLY n 1 77 THR n 1 78 LEU n 1 79 ALA n 1 80 THR n 1 81 THR n 1 82 ASN n 1 83 GLY n 1 84 ASN n 1 85 PHE n 1 86 ARG n 1 87 VAL n 1 88 ASN n 1 89 CYS n 1 90 PHE n 1 91 LEU n 1 92 LYS n 1 93 LYS n 1 94 VAL n 1 95 GLN n 1 96 ASN n 1 97 GLN n 1 98 TYR n 1 99 LEU n 1 100 ILE n 1 101 HIS n 1 102 GLN n 1 103 ILE n 1 104 ARG n 1 105 ILE n 1 106 ASP n 1 107 LYS n 1 108 ILE n 1 109 ASN n 1 110 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene BACOVA_04304 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacteroides ovatus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 411476 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 8483 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain PB1 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A7M2H0_BACOV _struct_ref.pdbx_db_accession A7M2H0 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QEIPAGVITAFKRGSSQELSKYMGDKVNLVFQGRSTNVDKQKATAAMQEFFTKNKVSGFNVNHQGKRDESSFVIGTLATT NGNFRVNCFLKKVQNQYLIHQIRIDKINE ; _struct_ref.pdbx_align_begin 22 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4ORL _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 110 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A7M2H0 _struct_ref_seq.db_align_beg 22 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 130 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 22 _struct_ref_seq.pdbx_auth_seq_align_end 130 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4ORL _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code A7M2H0 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PEG non-polymer . 'DI(HYDROXYETHYL)ETHER' ? 'C4 H10 O3' 106.120 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 4ORL # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.13 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 42.29 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 4.2 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '40.00% polyethylene glycol 600, 0.1M phosphate-citrate pH 4.2, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.details 'Flat mirror (vertical focusing); single crystal Si(111) bent monochromator (horizontal focusing)' _diffrn_detector.pdbx_collection_date 2013-01-23 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'single crystal Si(111) bent' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97886 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength 0.97886 _diffrn_source.pdbx_wavelength_list ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 4ORL _reflns.d_resolution_high 1.40 _reflns.d_resolution_low 27.894 _reflns.number_obs 21177 _reflns.pdbx_Rmerge_I_obs 0.023 _reflns.pdbx_netI_over_sigmaI 18.780 _reflns.percent_possible_obs 96.700 _reflns.B_iso_Wilson_estimate 17.296 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.400 1.450 8052 ? 3848 0.393 2.3 ? ? ? ? ? 95.800 1 1 1.450 1.510 8118 ? 4016 0.266 3.3 ? ? ? ? ? 96.900 2 1 1.510 1.580 8793 ? 4046 0.172 5.2 ? ? ? ? ? 97.500 3 1 1.580 1.660 8090 ? 3784 0.127 6.8 ? ? ? ? ? 97.400 4 1 1.660 1.760 7692 ? 3765 0.091 9.2 ? ? ? ? ? 96.500 5 1 1.760 1.900 9063 ? 4121 0.059 14.0 ? ? ? ? ? 97.900 6 1 1.900 2.090 8539 ? 3963 0.033 22.9 ? ? ? ? ? 97.900 7 1 2.090 2.390 8282 ? 3893 0.024 30.2 ? ? ? ? ? 96.200 8 1 2.390 3.010 8664 ? 3946 0.019 39.9 ? ? ? ? ? 97.300 9 1 3.010 27.894 8431 ? 3843 0.013 54.6 ? ? ? ? ? 93.500 10 1 # _refine.entry_id 4ORL _refine.ls_d_res_high 1.4000 _refine.ls_d_res_low 27.894 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.8800 _refine.ls_number_reflns_obs 21177 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1.HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2.A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3.ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. 4.ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 5.WATERS WERE EXCLUDED FROM AUTOMATIC TLS ASSIGNMENT. 6.REFINEMENT WAS RESTRAINED AGAINST EXPERIMENTAL PHASES. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1832 _refine.ls_R_factor_R_work 0.1819 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2085 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.1000 _refine.ls_number_reflns_R_free 1086 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 24.8120 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -1.0000 _refine.aniso_B[2][2] 1.7900 _refine.aniso_B[3][3] -0.7900 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9680 _refine.correlation_coeff_Fo_to_Fc_free 0.9540 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.0700 _refine.pdbx_overall_ESU_R_Free 0.0710 _refine.overall_SU_ML 0.0510 _refine.overall_SU_B 2.7760 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 65.170 _refine.B_iso_min 8.960 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.250 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 854 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 7 _refine_hist.number_atoms_solvent 115 _refine_hist.number_atoms_total 976 _refine_hist.d_res_high 1.4000 _refine_hist.d_res_low 27.894 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 1032 0.011 0.019 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 989 0.002 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1410 1.126 1.930 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 2276 0.650 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 147 4.987 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 57 34.839 25.088 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 182 11.447 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 7 12.599 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 151 0.088 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1279 0.007 0.020 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 280 0.002 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 503 0.936 1.227 ? ? 'X-RAY DIFFRACTION' r_mcbond_other 502 0.822 1.219 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 641 1.356 2.282 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.4000 _refine_ls_shell.d_res_low 1.4370 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 98.8200 _refine_ls_shell.number_reflns_R_work 1439 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2790 _refine_ls_shell.R_factor_R_free 0.2630 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 69 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1508 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.title 'Crystal structure of a DUF4783 family protein (BACOVA_04304) from Bacteroides ovatus ATCC 8483 at 1.40 A resolution' _struct.entry_id 4ORL _struct.pdbx_model_type_details ? _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.text ;PF16022 family, DUF4783, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, UNKNOWN FUNCTION ; _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.entry_id 4ORL # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 5 ? GLY A 15 ? PRO A 25 GLY A 35 1 ? 11 HELX_P HELX_P2 2 SER A 16 ? LYS A 22 ? SER A 36 LYS A 42 1 ? 7 HELX_P HELX_P3 3 LYS A 41 ? ASN A 55 ? LYS A 61 ASN A 75 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A TYR 23 C ? ? ? 1_555 A MSE 24 N A ? A TYR 43 A MSE 44 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale2 covale both ? A TYR 23 C ? ? ? 1_555 A MSE 24 N B ? A TYR 43 A MSE 44 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale3 covale both ? A MSE 24 C A ? ? 1_555 A GLY 25 N ? ? A MSE 44 A GLY 45 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale4 covale both ? A MSE 24 C B ? ? 1_555 A GLY 25 N ? ? A MSE 44 A GLY 45 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale5 covale both ? A ALA 47 C ? ? ? 1_555 A MSE 48 N ? ? A ALA 67 A MSE 68 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale6 covale both ? A MSE 48 C ? ? ? 1_555 A GLN 49 N ? ? A MSE 68 A GLN 69 1_555 ? ? ? ? ? ? ? 1.328 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 35 ? ASP A 40 ? ARG A 55 ASP A 60 A 2 MSE A 24 ? PHE A 32 ? MSE A 44 PHE A 52 A 3 GLN A 97 ? ILE A 108 ? GLN A 117 ILE A 128 A 4 GLY A 83 ? VAL A 94 ? GLY A 103 VAL A 114 A 5 SER A 71 ? THR A 80 ? SER A 91 THR A 100 A 6 VAL A 57 ? ARG A 68 ? VAL A 77 ARG A 88 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL A 39 ? O VAL A 59 N VAL A 28 ? N VAL A 48 A 2 3 N VAL A 31 ? N VAL A 51 O ILE A 105 ? O ILE A 125 A 3 4 O GLN A 97 ? O GLN A 117 N VAL A 94 ? N VAL A 114 A 4 5 O PHE A 85 ? O PHE A 105 N LEU A 78 ? N LEU A 98 A 5 6 O ILE A 75 ? O ILE A 95 N HIS A 64 ? N HIS A 84 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id PEG _struct_site.pdbx_auth_seq_id 201 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE PEG A 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 GLN A 18 ? GLN A 38 . ? 1_555 ? 2 AC1 4 GLN A 18 ? GLN A 38 . ? 2_655 ? 3 AC1 4 HOH C . ? HOH A 408 . ? 2_655 ? 4 AC1 4 HOH C . ? HOH A 408 . ? 1_555 ? # _atom_sites.entry_id 4ORL _atom_sites.fract_transf_matrix[1][1] 0.020993 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009687 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023130 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 0 GLY GLY A . n A 1 2 GLN 2 22 22 GLN GLN A . n A 1 3 GLU 3 23 23 GLU GLU A . n A 1 4 ILE 4 24 24 ILE ILE A . n A 1 5 PRO 5 25 25 PRO PRO A . n A 1 6 ALA 6 26 26 ALA ALA A . n A 1 7 GLY 7 27 27 GLY GLY A . n A 1 8 VAL 8 28 28 VAL VAL A . n A 1 9 ILE 9 29 29 ILE ILE A . n A 1 10 THR 10 30 30 THR THR A . n A 1 11 ALA 11 31 31 ALA ALA A . n A 1 12 PHE 12 32 32 PHE PHE A . n A 1 13 LYS 13 33 33 LYS LYS A . n A 1 14 ARG 14 34 34 ARG ARG A . n A 1 15 GLY 15 35 35 GLY GLY A . n A 1 16 SER 16 36 36 SER SER A . n A 1 17 SER 17 37 37 SER SER A . n A 1 18 GLN 18 38 38 GLN GLN A . n A 1 19 GLU 19 39 39 GLU GLU A . n A 1 20 LEU 20 40 40 LEU LEU A . n A 1 21 SER 21 41 41 SER SER A . n A 1 22 LYS 22 42 42 LYS LYS A . n A 1 23 TYR 23 43 43 TYR TYR A . n A 1 24 MSE 24 44 44 MSE MSE A . n A 1 25 GLY 25 45 45 GLY GLY A . n A 1 26 ASP 26 46 46 ASP ASP A . n A 1 27 LYS 27 47 47 LYS LYS A . n A 1 28 VAL 28 48 48 VAL VAL A . n A 1 29 ASN 29 49 49 ASN ASN A . n A 1 30 LEU 30 50 50 LEU LEU A . n A 1 31 VAL 31 51 51 VAL VAL A . n A 1 32 PHE 32 52 52 PHE PHE A . n A 1 33 GLN 33 53 53 GLN GLN A . n A 1 34 GLY 34 54 54 GLY GLY A . n A 1 35 ARG 35 55 55 ARG ARG A . n A 1 36 SER 36 56 56 SER SER A . n A 1 37 THR 37 57 57 THR THR A . n A 1 38 ASN 38 58 58 ASN ASN A . n A 1 39 VAL 39 59 59 VAL VAL A . n A 1 40 ASP 40 60 60 ASP ASP A . n A 1 41 LYS 41 61 61 LYS LYS A . n A 1 42 GLN 42 62 62 GLN GLN A . n A 1 43 LYS 43 63 63 LYS LYS A . n A 1 44 ALA 44 64 64 ALA ALA A . n A 1 45 THR 45 65 65 THR THR A . n A 1 46 ALA 46 66 66 ALA ALA A . n A 1 47 ALA 47 67 67 ALA ALA A . n A 1 48 MSE 48 68 68 MSE MSE A . n A 1 49 GLN 49 69 69 GLN GLN A . n A 1 50 GLU 50 70 70 GLU GLU A . n A 1 51 PHE 51 71 71 PHE PHE A . n A 1 52 PHE 52 72 72 PHE PHE A . n A 1 53 THR 53 73 73 THR THR A . n A 1 54 LYS 54 74 74 LYS LYS A . n A 1 55 ASN 55 75 75 ASN ASN A . n A 1 56 LYS 56 76 76 LYS LYS A . n A 1 57 VAL 57 77 77 VAL VAL A . n A 1 58 SER 58 78 78 SER SER A . n A 1 59 GLY 59 79 79 GLY GLY A . n A 1 60 PHE 60 80 80 PHE PHE A . n A 1 61 ASN 61 81 81 ASN ASN A . n A 1 62 VAL 62 82 82 VAL VAL A . n A 1 63 ASN 63 83 83 ASN ASN A . n A 1 64 HIS 64 84 84 HIS HIS A . n A 1 65 GLN 65 85 85 GLN GLN A . n A 1 66 GLY 66 86 86 GLY GLY A . n A 1 67 LYS 67 87 87 LYS LYS A . n A 1 68 ARG 68 88 88 ARG ARG A . n A 1 69 ASP 69 89 89 ASP ASP A . n A 1 70 GLU 70 90 90 GLU GLU A . n A 1 71 SER 71 91 91 SER SER A . n A 1 72 SER 72 92 92 SER SER A . n A 1 73 PHE 73 93 93 PHE PHE A . n A 1 74 VAL 74 94 94 VAL VAL A . n A 1 75 ILE 75 95 95 ILE ILE A . n A 1 76 GLY 76 96 96 GLY GLY A . n A 1 77 THR 77 97 97 THR THR A . n A 1 78 LEU 78 98 98 LEU LEU A . n A 1 79 ALA 79 99 99 ALA ALA A . n A 1 80 THR 80 100 100 THR THR A . n A 1 81 THR 81 101 101 THR THR A . n A 1 82 ASN 82 102 102 ASN ASN A . n A 1 83 GLY 83 103 103 GLY GLY A . n A 1 84 ASN 84 104 104 ASN ASN A . n A 1 85 PHE 85 105 105 PHE PHE A . n A 1 86 ARG 86 106 106 ARG ARG A . n A 1 87 VAL 87 107 107 VAL VAL A . n A 1 88 ASN 88 108 108 ASN ASN A . n A 1 89 CYS 89 109 109 CYS CYS A . n A 1 90 PHE 90 110 110 PHE PHE A . n A 1 91 LEU 91 111 111 LEU LEU A . n A 1 92 LYS 92 112 112 LYS LYS A . n A 1 93 LYS 93 113 113 LYS LYS A . n A 1 94 VAL 94 114 114 VAL VAL A . n A 1 95 GLN 95 115 115 GLN GLN A . n A 1 96 ASN 96 116 116 ASN ASN A . n A 1 97 GLN 97 117 117 GLN GLN A . n A 1 98 TYR 98 118 118 TYR TYR A . n A 1 99 LEU 99 119 119 LEU LEU A . n A 1 100 ILE 100 120 120 ILE ILE A . n A 1 101 HIS 101 121 121 HIS HIS A . n A 1 102 GLN 102 122 122 GLN GLN A . n A 1 103 ILE 103 123 123 ILE ILE A . n A 1 104 ARG 104 124 124 ARG ARG A . n A 1 105 ILE 105 125 125 ILE ILE A . n A 1 106 ASP 106 126 126 ASP ASP A . n A 1 107 LYS 107 127 127 LYS LYS A . n A 1 108 ILE 108 128 128 ILE ILE A . n A 1 109 ASN 109 129 129 ASN ASN A . n A 1 110 GLU 110 130 130 GLU GLU A . n # _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PEG 1 201 131 PEG PEG A . C 3 HOH 1 301 132 HOH HOH A . C 3 HOH 2 302 133 HOH HOH A . C 3 HOH 3 303 134 HOH HOH A . C 3 HOH 4 304 135 HOH HOH A . C 3 HOH 5 305 136 HOH HOH A . C 3 HOH 6 306 137 HOH HOH A . C 3 HOH 7 307 138 HOH HOH A . C 3 HOH 8 308 139 HOH HOH A . C 3 HOH 9 309 140 HOH HOH A . C 3 HOH 10 310 141 HOH HOH A . C 3 HOH 11 311 142 HOH HOH A . C 3 HOH 12 312 143 HOH HOH A . C 3 HOH 13 313 144 HOH HOH A . C 3 HOH 14 314 145 HOH HOH A . C 3 HOH 15 315 146 HOH HOH A . C 3 HOH 16 316 147 HOH HOH A . C 3 HOH 17 317 148 HOH HOH A . C 3 HOH 18 318 149 HOH HOH A . C 3 HOH 19 319 150 HOH HOH A . C 3 HOH 20 320 151 HOH HOH A . C 3 HOH 21 321 152 HOH HOH A . C 3 HOH 22 322 153 HOH HOH A . C 3 HOH 23 323 154 HOH HOH A . C 3 HOH 24 324 155 HOH HOH A . C 3 HOH 25 325 156 HOH HOH A . C 3 HOH 26 326 157 HOH HOH A . C 3 HOH 27 327 158 HOH HOH A . C 3 HOH 28 328 159 HOH HOH A . C 3 HOH 29 329 160 HOH HOH A . C 3 HOH 30 330 161 HOH HOH A . C 3 HOH 31 331 162 HOH HOH A . C 3 HOH 32 332 163 HOH HOH A . C 3 HOH 33 333 164 HOH HOH A . C 3 HOH 34 334 165 HOH HOH A . C 3 HOH 35 335 166 HOH HOH A . C 3 HOH 36 336 167 HOH HOH A . C 3 HOH 37 337 168 HOH HOH A . C 3 HOH 38 338 169 HOH HOH A . C 3 HOH 39 339 170 HOH HOH A . C 3 HOH 40 340 171 HOH HOH A . C 3 HOH 41 341 172 HOH HOH A . C 3 HOH 42 342 173 HOH HOH A . C 3 HOH 43 343 174 HOH HOH A . C 3 HOH 44 344 175 HOH HOH A . C 3 HOH 45 345 176 HOH HOH A . C 3 HOH 46 346 177 HOH HOH A . C 3 HOH 47 347 178 HOH HOH A . C 3 HOH 48 348 179 HOH HOH A . C 3 HOH 49 349 180 HOH HOH A . C 3 HOH 50 350 181 HOH HOH A . C 3 HOH 51 351 182 HOH HOH A . C 3 HOH 52 352 183 HOH HOH A . C 3 HOH 53 353 184 HOH HOH A . C 3 HOH 54 354 185 HOH HOH A . C 3 HOH 55 355 186 HOH HOH A . C 3 HOH 56 356 187 HOH HOH A . C 3 HOH 57 357 188 HOH HOH A . C 3 HOH 58 358 189 HOH HOH A . C 3 HOH 59 359 190 HOH HOH A . C 3 HOH 60 360 191 HOH HOH A . C 3 HOH 61 361 192 HOH HOH A . C 3 HOH 62 362 193 HOH HOH A . C 3 HOH 63 363 194 HOH HOH A . C 3 HOH 64 364 195 HOH HOH A . C 3 HOH 65 365 196 HOH HOH A . C 3 HOH 66 366 197 HOH HOH A . C 3 HOH 67 367 198 HOH HOH A . C 3 HOH 68 368 199 HOH HOH A . C 3 HOH 69 369 200 HOH HOH A . C 3 HOH 70 370 201 HOH HOH A . C 3 HOH 71 371 202 HOH HOH A . C 3 HOH 72 372 203 HOH HOH A . C 3 HOH 73 373 204 HOH HOH A . C 3 HOH 74 374 205 HOH HOH A . C 3 HOH 75 375 206 HOH HOH A . C 3 HOH 76 376 207 HOH HOH A . C 3 HOH 77 377 208 HOH HOH A . C 3 HOH 78 378 209 HOH HOH A . C 3 HOH 79 379 210 HOH HOH A . C 3 HOH 80 380 211 HOH HOH A . C 3 HOH 81 381 212 HOH HOH A . C 3 HOH 82 382 213 HOH HOH A . C 3 HOH 83 383 214 HOH HOH A . C 3 HOH 84 384 215 HOH HOH A . C 3 HOH 85 385 216 HOH HOH A . C 3 HOH 86 386 217 HOH HOH A . C 3 HOH 87 387 218 HOH HOH A . C 3 HOH 88 388 219 HOH HOH A . C 3 HOH 89 389 220 HOH HOH A . C 3 HOH 90 390 221 HOH HOH A . C 3 HOH 91 391 222 HOH HOH A . C 3 HOH 92 392 223 HOH HOH A . C 3 HOH 93 393 224 HOH HOH A . C 3 HOH 94 394 225 HOH HOH A . C 3 HOH 95 395 226 HOH HOH A . C 3 HOH 96 396 227 HOH HOH A . C 3 HOH 97 397 228 HOH HOH A . C 3 HOH 98 398 229 HOH HOH A . C 3 HOH 99 399 230 HOH HOH A . C 3 HOH 100 400 231 HOH HOH A . C 3 HOH 101 401 232 HOH HOH A . C 3 HOH 102 402 233 HOH HOH A . C 3 HOH 103 403 234 HOH HOH A . C 3 HOH 104 404 235 HOH HOH A . C 3 HOH 105 405 236 HOH HOH A . C 3 HOH 106 406 237 HOH HOH A . C 3 HOH 107 407 238 HOH HOH A . C 3 HOH 108 408 239 HOH HOH A . C 3 HOH 109 409 240 HOH HOH A . C 3 HOH 110 410 241 HOH HOH A . C 3 HOH 111 411 242 HOH HOH A . C 3 HOH 112 412 243 HOH HOH A . C 3 HOH 113 413 244 HOH HOH A . C 3 HOH 114 414 245 HOH HOH A . C 3 HOH 115 415 246 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 24 A MSE 44 ? MET SELENOMETHIONINE 2 A MSE 48 A MSE 68 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A PEG 201 ? B PEG . 2 1 A HOH 304 ? C HOH . 3 1 A HOH 362 ? C HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-03-05 2 'Structure model' 1 1 2014-12-24 3 'Structure model' 1 2 2017-11-22 4 'Structure model' 1 3 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Structure summary' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' database_2 3 4 'Structure model' struct_conn 4 4 'Structure model' struct_ref_seq_dif 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_database_2.pdbx_DOI' 4 4 'Structure model' '_database_2.pdbx_database_accession' 5 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 4 'Structure model' '_struct_ref_seq_dif.details' 7 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 8 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 9 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 11.6040 _pdbx_refine_tls.origin_y 11.9277 _pdbx_refine_tls.origin_z 33.9471 _pdbx_refine_tls.T[1][1] 0.0929 _pdbx_refine_tls.T[2][2] 0.0557 _pdbx_refine_tls.T[3][3] 0.1203 _pdbx_refine_tls.T[1][2] -0.0209 _pdbx_refine_tls.T[1][3] 0.0116 _pdbx_refine_tls.T[2][3] -0.0330 _pdbx_refine_tls.L[1][1] 2.7887 _pdbx_refine_tls.L[2][2] 0.5650 _pdbx_refine_tls.L[3][3] 6.4339 _pdbx_refine_tls.L[1][2] -0.0662 _pdbx_refine_tls.L[1][3] -1.6903 _pdbx_refine_tls.L[2][3] -0.2487 _pdbx_refine_tls.S[1][1] 0.1245 _pdbx_refine_tls.S[2][2] 0.0135 _pdbx_refine_tls.S[3][3] -0.1379 _pdbx_refine_tls.S[1][2] 0.0961 _pdbx_refine_tls.S[1][3] -0.0974 _pdbx_refine_tls.S[2][3] -0.0700 _pdbx_refine_tls.S[2][1] -0.0222 _pdbx_refine_tls.S[3][1] -0.1612 _pdbx_refine_tls.S[3][2] 0.4417 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 0 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 130 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection ? # _phasing.method SAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 4 SHARP . ? package 'Eric de La Fortelle' sharp-develop@globalphasing.com phasing http://www.globalphasing.com/sharp/ ? ? 5 XSCALE 'July 4, 2012' ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 6 REFMAC 5.7.0032 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 7 XDS . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? # _pdbx_entry_details.entry_id 4ORL _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THIS CONSTRUCT (RESIDUES 22-130) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 89 ? ? 53.78 -120.83 2 1 GLN A 115 ? ? 59.48 -124.89 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLN 22 ? CD ? A GLN 2 CD 2 1 Y 1 A GLN 22 ? OE1 ? A GLN 2 OE1 3 1 Y 1 A GLN 22 ? NE2 ? A GLN 2 NE2 4 1 Y 1 A LYS 42 ? CE ? A LYS 22 CE 5 1 Y 1 A LYS 42 ? NZ ? A LYS 22 NZ 6 1 Y 1 A LYS 47 ? CE ? A LYS 27 CE 7 1 Y 1 A LYS 47 ? NZ ? A LYS 27 NZ 8 1 Y 1 A LYS 74 ? CD ? A LYS 54 CD 9 1 Y 1 A LYS 74 ? CE ? A LYS 54 CE 10 1 Y 1 A LYS 74 ? NZ ? A LYS 54 NZ 11 1 Y 1 A LYS 76 ? CD ? A LYS 56 CD 12 1 Y 1 A LYS 76 ? CE ? A LYS 56 CE 13 1 Y 1 A LYS 76 ? NZ ? A LYS 56 NZ 14 1 Y 1 A LYS 112 ? CD ? A LYS 92 CD 15 1 Y 1 A LYS 112 ? CE ? A LYS 92 CE 16 1 Y 1 A LYS 112 ? NZ ? A LYS 92 NZ # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'DI(HYDROXYETHYL)ETHER' PEG 3 water HOH #