HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 11-FEB-14 4ORM TITLE CRYSTAL STRUCTURE OF PLASMODIUM FALCIPARUM DIHYDROOROTATE TITLE 2 DEHYDROGENASE BOUND WITH INHIBITOR DSM338 (N-[3,5-DIFLUORO-4- TITLE 3 (TRIFLUOROMETHYL)PHENYL]-5-METHYL-2-(TRIFLUOROMETHYL)[1,2, TITLE 4 4]TRIAZOLO[1,5-A]PYRIMIDIN-7-AMINE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROOROTATE DEHYDROGENASE (QUINONE), MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 158-383, UNP RESIDUES 414-569; COMPND 5 SYNONYM: DHODEHASE, DIHYDROOROTATE OXIDASE; COMPND 6 EC: 1.3.5.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 STRAIN: 3D7; SOURCE 5 GENE: DIHYDROOROTATE DEHYDROGENASE, PFF0160C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS ALPHA/BETA BARREL, OXIDOREDUCTASE, FMN, MITOCHONDRIAL MEMBRANE, KEYWDS 2 OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR X.DENG,M.A.PHILLIPS REVDAT 4 28-FEB-24 4ORM 1 REMARK SEQADV REVDAT 3 23-AUG-17 4ORM 1 SOURCE REMARK REVDAT 2 09-JUL-14 4ORM 1 JRNL REVDAT 1 04-JUN-14 4ORM 0 JRNL AUTH X.DENG,S.KOKKONDA,F.EL MAZOUNI,J.WHITE,J.N.BURROWS, JRNL AUTH 2 W.KAMINSKY,S.A.CHARMAN,D.MATTHEWS,P.K.RATHOD,M.A.PHILLIPS JRNL TITL FLUORINE MODULATES SPECIES SELECTIVITY IN THE JRNL TITL 2 TRIAZOLOPYRIMIDINE CLASS OF PLASMODIUM FALCIPARUM JRNL TITL 3 DIHYDROOROTATE DEHYDROGENASE INHIBITORS. JRNL REF J.MED.CHEM. V. 57 5381 2014 JRNL REFN ISSN 0022-2623 JRNL PMID 24801997 JRNL DOI 10.1021/JM500481T REMARK 2 REMARK 2 RESOLUTION. 2.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.07 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 34734 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1832 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.07 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2540 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE SET COUNT : 117 REMARK 3 BIN FREE R VALUE : 0.3390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2974 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 85 REMARK 3 SOLVENT ATOMS : 117 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.11000 REMARK 3 B22 (A**2) : 1.11000 REMARK 3 B33 (A**2) : -1.66000 REMARK 3 B12 (A**2) : 0.55000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.147 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.151 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.110 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.591 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3124 ; 0.022 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4223 ; 2.242 ; 1.998 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 380 ; 7.398 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 139 ;39.176 ;25.540 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 577 ;17.585 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;17.705 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 468 ; 0.165 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2316 ; 0.014 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 161 A 197 REMARK 3 ORIGIN FOR THE GROUP (A): 8.7735 31.8805 -19.5394 REMARK 3 T TENSOR REMARK 3 T11: 0.2003 T22: 0.2343 REMARK 3 T33: 0.1594 T12: 0.0229 REMARK 3 T13: 0.0597 T23: -0.0194 REMARK 3 L TENSOR REMARK 3 L11: 5.6957 L22: 2.9815 REMARK 3 L33: 3.6801 L12: 2.0944 REMARK 3 L13: 2.3784 L23: -0.5879 REMARK 3 S TENSOR REMARK 3 S11: 0.0023 S12: 0.0506 S13: 0.4007 REMARK 3 S21: -0.0706 S22: -0.0691 S23: 0.1602 REMARK 3 S31: -0.3444 S32: 0.0590 S33: 0.0669 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 198 A 340 REMARK 3 ORIGIN FOR THE GROUP (A): 6.4776 21.8927 -2.9426 REMARK 3 T TENSOR REMARK 3 T11: 0.1543 T22: 0.1891 REMARK 3 T33: 0.1596 T12: 0.0119 REMARK 3 T13: 0.0319 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 1.6086 L22: 1.5885 REMARK 3 L33: 1.7724 L12: 0.0821 REMARK 3 L13: 0.4902 L23: 0.1704 REMARK 3 S TENSOR REMARK 3 S11: 0.0288 S12: -0.0824 S13: -0.1551 REMARK 3 S21: 0.0774 S22: -0.0148 S23: 0.0829 REMARK 3 S31: 0.1692 S32: -0.1155 S33: -0.0141 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 341 A 360 REMARK 3 ORIGIN FOR THE GROUP (A): -10.2759 13.1439 0.5899 REMARK 3 T TENSOR REMARK 3 T11: 0.6257 T22: 0.7436 REMARK 3 T33: 0.5448 T12: -0.2728 REMARK 3 T13: -0.1044 T23: -0.0607 REMARK 3 L TENSOR REMARK 3 L11: 0.2208 L22: 0.3229 REMARK 3 L33: 0.6476 L12: -0.1312 REMARK 3 L13: -0.2223 L23: -0.1858 REMARK 3 S TENSOR REMARK 3 S11: -0.0440 S12: 0.3139 S13: -0.2425 REMARK 3 S21: -0.2914 S22: 0.0565 S23: 0.3628 REMARK 3 S31: 0.4990 S32: -0.6124 S33: -0.0125 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 361 A 414 REMARK 3 ORIGIN FOR THE GROUP (A): 8.2183 11.7895 14.3857 REMARK 3 T TENSOR REMARK 3 T11: 0.2790 T22: 0.2404 REMARK 3 T33: 0.2080 T12: 0.0019 REMARK 3 T13: 0.0159 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: 12.2624 L22: 0.5835 REMARK 3 L33: 1.2288 L12: -0.1713 REMARK 3 L13: 3.4255 L23: 0.3144 REMARK 3 S TENSOR REMARK 3 S11: 0.0686 S12: -0.0706 S13: -0.4764 REMARK 3 S21: 0.0027 S22: 0.0285 S23: 0.0631 REMARK 3 S31: 0.1275 S32: -0.0375 S33: -0.0971 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 415 A 565 REMARK 3 ORIGIN FOR THE GROUP (A): -5.8389 30.9180 1.6912 REMARK 3 T TENSOR REMARK 3 T11: 0.2094 T22: 0.2070 REMARK 3 T33: 0.2118 T12: 0.0040 REMARK 3 T13: 0.0101 T23: -0.0129 REMARK 3 L TENSOR REMARK 3 L11: 1.1900 L22: 1.0849 REMARK 3 L33: 1.1471 L12: -0.1264 REMARK 3 L13: 0.1193 L23: -0.3419 REMARK 3 S TENSOR REMARK 3 S11: 0.0136 S12: -0.1230 S13: 0.0901 REMARK 3 S21: 0.1226 S22: 0.0086 S23: 0.2547 REMARK 3 S31: -0.0596 S32: -0.2490 S33: -0.0221 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ORM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000084863. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36567 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.070 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.300 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04700 REMARK 200 FOR THE DATA SET : 39.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.07 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.83100 REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.16 M AMMONIUM SULFATE, 12-13% REMARK 280 PEG4000, 0.1 M SODIUM ACETATE, PH 4.8, AND 10 MM DTT, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.09167 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 92.18333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 46.09167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 92.18333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 139 REMARK 465 GLY A 140 REMARK 465 HIS A 141 REMARK 465 HIS A 142 REMARK 465 HIS A 143 REMARK 465 HIS A 144 REMARK 465 HIS A 145 REMARK 465 HIS A 146 REMARK 465 ALA A 147 REMARK 465 GLU A 148 REMARK 465 ASN A 149 REMARK 465 LEU A 150 REMARK 465 TYR A 151 REMARK 465 PHE A 152 REMARK 465 GLN A 153 REMARK 465 GLY A 154 REMARK 465 ALA A 155 REMARK 465 ASP A 156 REMARK 465 PRO A 157 REMARK 465 PHE A 158 REMARK 465 GLU A 159 REMARK 465 SER A 160 REMARK 465 HIS A 566 REMARK 465 SER A 567 REMARK 465 LYS A 568 REMARK 465 SER A 569 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 213 -130.24 53.80 REMARK 500 LEU A 351 -57.45 71.95 REMARK 500 TYR A 528 -67.71 -141.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2V6 A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ORO A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1006 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4OQV RELATED DB: PDB REMARK 900 RELATED ID: 4ORI RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 UNP Q08210 RESIDUES 384-413 ARE TRUNCATED DBREF 4ORM A 158 383 UNP Q08210 PYRD_PLAF7 158 383 DBREF 4ORM A 414 569 UNP Q08210 PYRD_PLAF7 414 569 SEQADV 4ORM MET A 139 UNP Q08210 EXPRESSION TAG SEQADV 4ORM GLY A 140 UNP Q08210 EXPRESSION TAG SEQADV 4ORM HIS A 141 UNP Q08210 EXPRESSION TAG SEQADV 4ORM HIS A 142 UNP Q08210 EXPRESSION TAG SEQADV 4ORM HIS A 143 UNP Q08210 EXPRESSION TAG SEQADV 4ORM HIS A 144 UNP Q08210 EXPRESSION TAG SEQADV 4ORM HIS A 145 UNP Q08210 EXPRESSION TAG SEQADV 4ORM HIS A 146 UNP Q08210 EXPRESSION TAG SEQADV 4ORM ALA A 147 UNP Q08210 EXPRESSION TAG SEQADV 4ORM GLU A 148 UNP Q08210 EXPRESSION TAG SEQADV 4ORM ASN A 149 UNP Q08210 EXPRESSION TAG SEQADV 4ORM LEU A 150 UNP Q08210 EXPRESSION TAG SEQADV 4ORM TYR A 151 UNP Q08210 EXPRESSION TAG SEQADV 4ORM PHE A 152 UNP Q08210 EXPRESSION TAG SEQADV 4ORM GLN A 153 UNP Q08210 EXPRESSION TAG SEQADV 4ORM GLY A 154 UNP Q08210 EXPRESSION TAG SEQADV 4ORM ALA A 155 UNP Q08210 EXPRESSION TAG SEQADV 4ORM ASP A 156 UNP Q08210 EXPRESSION TAG SEQADV 4ORM PRO A 157 UNP Q08210 EXPRESSION TAG SEQRES 1 A 401 MET GLY HIS HIS HIS HIS HIS HIS ALA GLU ASN LEU TYR SEQRES 2 A 401 PHE GLN GLY ALA ASP PRO PHE GLU SER TYR ASN PRO GLU SEQRES 3 A 401 PHE PHE LEU TYR ASP ILE PHE LEU LYS PHE CYS LEU LYS SEQRES 4 A 401 TYR ILE ASP GLY GLU ILE CYS HIS ASP LEU PHE LEU LEU SEQRES 5 A 401 LEU GLY LYS TYR ASN ILE LEU PRO TYR ASP THR SER ASN SEQRES 6 A 401 ASP SER ILE TYR ALA CYS THR ASN ILE LYS HIS LEU ASP SEQRES 7 A 401 PHE ILE ASN PRO PHE GLY VAL ALA ALA GLY PHE ASP LYS SEQRES 8 A 401 ASN GLY VAL CYS ILE ASP SER ILE LEU LYS LEU GLY PHE SEQRES 9 A 401 SER PHE ILE GLU ILE GLY THR ILE THR PRO ARG GLY GLN SEQRES 10 A 401 THR GLY ASN ALA LYS PRO ARG ILE PHE ARG ASP VAL GLU SEQRES 11 A 401 SER ARG SER ILE ILE ASN SER CYS GLY PHE ASN ASN MET SEQRES 12 A 401 GLY CYS ASP LYS VAL THR GLU ASN LEU ILE LEU PHE ARG SEQRES 13 A 401 LYS ARG GLN GLU GLU ASP LYS LEU LEU SER LYS HIS ILE SEQRES 14 A 401 VAL GLY VAL SER ILE GLY LYS ASN LYS ASP THR VAL ASN SEQRES 15 A 401 ILE VAL ASP ASP LEU LYS TYR CYS ILE ASN LYS ILE GLY SEQRES 16 A 401 ARG TYR ALA ASP TYR ILE ALA ILE ASN VAL SER SER PRO SEQRES 17 A 401 ASN THR PRO GLY LEU ARG ASP ASN GLN GLU ALA GLY LYS SEQRES 18 A 401 LEU LYS ASN ILE ILE LEU SER VAL LYS GLU GLU ILE ASP SEQRES 19 A 401 ASN LEU GLU LYS ASN ASN ILE MET ASN ASP GLU PHE LEU SEQRES 20 A 401 TRP PHE ASN THR THR LYS LYS LYS PRO LEU VAL PHE VAL SEQRES 21 A 401 LYS LEU ALA PRO ASP LEU ASN GLN GLU GLN LYS LYS GLU SEQRES 22 A 401 ILE ALA ASP VAL LEU LEU GLU THR ASN ILE ASP GLY MET SEQRES 23 A 401 ILE ILE SER ASN THR THR THR GLN ILE ASN ASP ILE LYS SEQRES 24 A 401 SER PHE GLU ASN LYS LYS GLY GLY VAL SER GLY ALA LYS SEQRES 25 A 401 LEU LYS ASP ILE SER THR LYS PHE ILE CYS GLU MET TYR SEQRES 26 A 401 ASN TYR THR ASN LYS GLN ILE PRO ILE ILE ALA SER GLY SEQRES 27 A 401 GLY ILE PHE SER GLY LEU ASP ALA LEU GLU LYS ILE GLU SEQRES 28 A 401 ALA GLY ALA SER VAL CYS GLN LEU TYR SER CYS LEU VAL SEQRES 29 A 401 PHE ASN GLY MET LYS SER ALA VAL GLN ILE LYS ARG GLU SEQRES 30 A 401 LEU ASN HIS LEU LEU TYR GLN ARG GLY TYR TYR ASN LEU SEQRES 31 A 401 LYS GLU ALA ILE GLY ARG LYS HIS SER LYS SER HET 2V6 A1001 27 HET FMN A1002 31 HET ORO A1003 11 HET GOL A1004 6 HET SO4 A1005 5 HET SO4 A1006 5 HETNAM 2V6 N-[3,5-DIFLUORO-4-(TRIFLUOROMETHYL)PHENYL]-5-METHYL-2- HETNAM 2 2V6 (TRIFLUOROMETHYL)[1,2,4]TRIAZOLO[1,5-A]PYRIMIDIN-7- HETNAM 3 2V6 AMINE HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM ORO OROTIC ACID HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN FMN RIBOFLAVIN MONOPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 2V6 C14 H7 F8 N5 FORMUL 3 FMN C17 H21 N4 O9 P FORMUL 4 ORO C5 H4 N2 O4 FORMUL 5 GOL C3 H8 O3 FORMUL 6 SO4 2(O4 S 2-) FORMUL 8 HOH *117(H2 O) HELIX 1 1 ASN A 162 ILE A 179 1 18 HELIX 2 2 ASP A 180 TYR A 194 1 15 HELIX 3 3 SER A 205 CYS A 209 5 5 HELIX 4 4 CYS A 233 LEU A 240 1 8 HELIX 5 5 GLY A 282 GLU A 298 1 17 HELIX 6 6 ASP A 300 SER A 304 5 5 HELIX 7 7 ASN A 320 GLY A 333 1 14 HELIX 8 8 ARG A 334 ALA A 336 5 3 HELIX 9 9 LEU A 351 GLN A 355 5 5 HELIX 10 10 GLU A 356 ASN A 378 1 23 HELIX 11 11 ASN A 381 TRP A 416 1 6 HELIX 12 12 ASN A 435 ASN A 450 1 16 HELIX 13 13 ILE A 466 GLU A 470 5 5 HELIX 14 14 LEU A 481 THR A 496 1 16 HELIX 15 15 SER A 510 ALA A 520 1 11 HELIX 16 16 TYR A 528 GLY A 535 1 8 HELIX 17 17 LYS A 537 ARG A 553 1 17 HELIX 18 18 LEU A 558 ILE A 562 5 5 SHEET 1 A 2 THR A 210 ILE A 212 0 SHEET 2 A 2 LEU A 215 PHE A 217 -1 O PHE A 217 N THR A 210 SHEET 1 B 9 PHE A 221 VAL A 223 0 SHEET 2 B 9 PHE A 244 ILE A 250 1 O GLU A 246 N VAL A 223 SHEET 3 B 9 ILE A 307 ILE A 312 1 O SER A 311 N ILE A 247 SHEET 4 B 9 TYR A 338 ASN A 342 1 O ALA A 340 N VAL A 310 SHEET 5 B 9 LEU A 425 LEU A 430 1 O LYS A 429 N ILE A 341 SHEET 6 B 9 GLY A 453 ILE A 456 1 O ILE A 455 N VAL A 428 SHEET 7 B 9 ILE A 502 SER A 505 1 O ILE A 503 N MET A 454 SHEET 8 B 9 ALA A 522 LEU A 527 1 O VAL A 524 N ALA A 504 SHEET 9 B 9 PHE A 221 VAL A 223 1 N GLY A 222 O LEU A 527 SHEET 1 C 3 ILE A 263 ASP A 266 0 SHEET 2 C 3 SER A 271 ASN A 274 -1 O SER A 271 N ASP A 266 SHEET 3 C 3 GLY A 475 GLY A 478 -1 O SER A 477 N ILE A 272 CISPEP 1 GLY A 248 THR A 249 0 8.35 CISPEP 2 LYS A 260 PRO A 261 0 1.54 CISPEP 3 ILE A 456 SER A 457 0 5.19 SITE 1 AC1 15 LEU A 172 GLY A 181 GLU A 182 CYS A 184 SITE 2 AC1 15 HIS A 185 PHE A 188 LEU A 189 LEU A 197 SITE 3 AC1 15 PHE A 227 LEU A 240 ILE A 263 ARG A 265 SITE 4 AC1 15 LEU A 531 VAL A 532 MET A 536 SITE 1 AC2 23 ALA A 224 ALA A 225 GLY A 226 LYS A 229 SITE 2 AC2 23 THR A 249 ILE A 263 ASN A 274 ASN A 342 SITE 3 AC2 23 LYS A 429 SER A 457 ASN A 458 SER A 477 SITE 4 AC2 23 GLY A 478 SER A 505 GLY A 506 GLY A 507 SITE 5 AC2 23 TYR A 528 SER A 529 ORO A1003 HOH A1104 SITE 6 AC2 23 HOH A1106 HOH A1108 HOH A1109 SITE 1 AC3 12 LYS A 229 ASN A 274 CYS A 276 GLY A 277 SITE 2 AC3 12 PHE A 278 ASN A 342 SER A 345 PRO A 346 SITE 3 AC3 12 ASN A 347 ASN A 458 THR A 459 FMN A1002 SITE 1 AC4 7 ASP A 180 PRO A 261 GLU A 375 ASN A 381 SITE 2 AC4 7 ASP A 382 HOH A1184 HOH A1210 SITE 1 AC5 5 GLU A 164 ASN A 195 LEU A 197 SO4 A1006 SITE 2 AC5 5 HOH A1105 SITE 1 AC6 5 ASN A 162 GLU A 164 ASN A 195 TYR A 199 SITE 2 AC6 5 SO4 A1005 CRYST1 85.471 85.471 138.275 90.00 90.00 120.00 P 64 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011700 0.006755 0.000000 0.00000 SCALE2 0.000000 0.013510 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007232 0.00000