HEADER DNA BINDING PROTEIN/DNA 13-FEB-14 4OSK TITLE CRYSTAL STRUCTURE OF TAL EFFECTOR REVEALS THE RECOGNITION BETWEEN TITLE 2 ASPARAGINE AND GUANINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HAX3; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 231-720; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(*TP*GP*TP*CP*CP*AP*AP*CP*TP*AP*CP*TP*AP*GP*AP*CP*T)-3'); COMPND 10 CHAIN: I, G; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'- COMPND 14 D(*AP*GP*TP*CP*TP*AP*GP*TP*AP*GP*TP*TP*GP*GP*AP*CP*A)-3'); COMPND 15 CHAIN: J, H; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XANTHOMONAS CAMPESTRIS PV. ARMORACIAE; SOURCE 3 ORGANISM_TAXID: 329463; SOURCE 4 GENE: HAX3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 MOL_ID: 3; SOURCE 10 SYNTHETIC: YES KEYWDS DNA BINDING PROTEIN, DNA, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.DENG,J.P.WU,C.Y.YAN,X.J.PAN,N.YAN REVDAT 2 08-NOV-23 4OSK 1 SEQADV REVDAT 1 28-MAY-14 4OSK 0 JRNL AUTH D.DENG,C.Y.YAN,J.P.WU,X.J.PAN,N.YAN JRNL TITL REVISITING THE TALE REPEAT JRNL REF PROTEIN CELL V. 5 297 2014 JRNL REFN ISSN 1674-800X JRNL PMID 24622844 JRNL DOI 10.1007/S13238-014-0035-2 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 50284 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2552 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.9759 - 6.2737 0.99 2701 152 0.1609 0.1876 REMARK 3 2 6.2737 - 4.9843 1.00 2686 136 0.1952 0.2402 REMARK 3 3 4.9843 - 4.3555 0.98 2637 139 0.1644 0.1876 REMARK 3 4 4.3555 - 3.9579 0.98 2637 131 0.1754 0.2380 REMARK 3 5 3.9579 - 3.6746 0.99 2638 148 0.1933 0.2194 REMARK 3 6 3.6746 - 3.4581 1.00 2677 149 0.2169 0.2665 REMARK 3 7 3.4581 - 3.2851 1.00 2667 139 0.2276 0.2836 REMARK 3 8 3.2851 - 3.1422 1.00 2624 123 0.2470 0.2920 REMARK 3 9 3.1422 - 3.0213 1.00 2665 143 0.2449 0.2632 REMARK 3 10 3.0213 - 2.9171 1.00 2665 136 0.2764 0.3131 REMARK 3 11 2.9171 - 2.8259 1.00 2635 144 0.2703 0.3081 REMARK 3 12 2.8259 - 2.7451 1.00 2647 155 0.2631 0.3177 REMARK 3 13 2.7451 - 2.6729 1.00 2671 124 0.2725 0.3290 REMARK 3 14 2.6729 - 2.6077 1.00 2648 146 0.2878 0.3245 REMARK 3 15 2.6077 - 2.5485 1.00 2630 159 0.2956 0.3552 REMARK 3 16 2.5485 - 2.4942 1.00 2621 157 0.2833 0.3202 REMARK 3 17 2.4942 - 2.4444 1.00 2649 147 0.2952 0.3027 REMARK 3 18 2.4444 - 2.3982 0.99 2634 124 0.2951 0.3619 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 36.82 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.610 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.66470 REMARK 3 B22 (A**2) : -5.37420 REMARK 3 B33 (A**2) : 6.03890 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -9.32940 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.029 8735 REMARK 3 ANGLE : 1.108 12193 REMARK 3 CHIRALITY : 0.063 1494 REMARK 3 PLANARITY : 0.007 1370 REMARK 3 DIHEDRAL : 22.469 3301 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -35.6595 12.7903 -19.9260 REMARK 3 T TENSOR REMARK 3 T11: 0.2677 T22: 0.2353 REMARK 3 T33: 0.2715 T12: 0.0191 REMARK 3 T13: 0.0211 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.5149 L22: 0.2598 REMARK 3 L33: 0.5370 L12: 0.0061 REMARK 3 L13: 0.2043 L23: 0.0528 REMARK 3 S TENSOR REMARK 3 S11: 0.0444 S12: 0.1066 S13: -0.0118 REMARK 3 S21: 0.0174 S22: -0.0174 S23: 0.0093 REMARK 3 S31: -0.0059 S32: 0.1228 S33: -0.0225 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4OSK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000084897. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50284 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.390 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3V6T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10%-15% PEG 3350, 12% ETHANOL, 0.1M REMARK 280 MES, PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 44.06450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 230 REMARK 465 GLN A 231 REMARK 465 TRP A 232 REMARK 465 HIS A 723 REMARK 465 HIS A 724 REMARK 465 HIS A 725 REMARK 465 HIS A 726 REMARK 465 HIS A 727 REMARK 465 HIS A 728 REMARK 465 ALA B 490 REMARK 465 HIS B 491 REMARK 465 HIS B 723 REMARK 465 HIS B 724 REMARK 465 HIS B 725 REMARK 465 HIS B 726 REMARK 465 HIS B 727 REMARK 465 HIS B 728 REMARK 465 DT G 17 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 326 CD REMARK 480 GLN A 379 CD REMARK 480 GLN A 462 CD REMARK 480 GLN A 530 CD REMARK 480 GLN A 591 CD REMARK 480 GLU B 292 CD REMARK 480 GLU B 308 CD REMARK 480 GLN B 326 CD REMARK 480 GLN B 564 CD REMARK 480 GLU B 598 CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP2 DC J 2 O HOH J 105 1.60 REMARK 500 N GLY A 472 O HOH A 883 1.87 REMARK 500 O GLU A 722 O HOH A 870 1.89 REMARK 500 OE1 GLU B 376 O HOH B 818 1.99 REMARK 500 NH2 ARG B 249 OG1 THR B 257 2.01 REMARK 500 OE1 GLU B 546 O HOH B 829 2.04 REMARK 500 OG1 THR B 270 O HOH B 828 2.04 REMARK 500 O HOH B 827 O HOH B 862 2.05 REMARK 500 OP2 DC I 5 O HOH I 107 2.05 REMARK 500 O HOH G 106 O HOH H 106 2.07 REMARK 500 O HOH B 836 O HOH B 845 2.12 REMARK 500 O HOH A 816 O HOH A 878 2.12 REMARK 500 O VAL A 567 OG SER A 571 2.13 REMARK 500 OP2 DT I 3 O HOH I 109 2.14 REMARK 500 NE2 GLN A 481 O HOH A 871 2.15 REMARK 500 OP1 DT J 6 O HOH J 101 2.17 REMARK 500 OP2 DA G 13 O HOH G 110 2.18 REMARK 500 OD1 ASN B 700 O HOH B 837 2.19 REMARK 500 N1 DA I 15 N3 DT J 1 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 N SER A 233 O TRP B 232 1656 2.10 REMARK 500 O5' DT I 1 OG SER B 233 1656 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT I 3 O4' - C1' - N1 ANGL. DEV. = -4.7 DEGREES REMARK 500 DC I 5 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG J 5 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 PRO B 693 C - N - CD ANGL. DEV. = -18.1 DEGREES REMARK 500 DT G 1 O4' - C4' - C3' ANGL. DEV. = -2.9 DEGREES REMARK 500 DC G 4 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DT G 9 N3 - C4 - O4 ANGL. DEV. = 4.3 DEGREES REMARK 500 DT G 9 C5 - C4 - O4 ANGL. DEV. = -4.5 DEGREES REMARK 500 DA G 13 O4' - C1' - N9 ANGL. DEV. = -4.4 DEGREES REMARK 500 DG H 8 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DG H 11 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 333 49.32 -82.36 REMARK 500 SER A 367 43.54 -84.63 REMARK 500 GLN A 387 -70.94 -61.69 REMARK 500 SER A 401 43.66 -84.96 REMARK 500 SER A 435 45.26 -89.76 REMARK 500 SER A 435 46.45 -89.92 REMARK 500 ARG A 448 -71.69 -68.99 REMARK 500 ALA A 456 -70.89 -72.70 REMARK 500 SER A 503 47.89 -79.10 REMARK 500 CYS A 522 31.63 -97.15 REMARK 500 GLN A 523 -37.06 -157.97 REMARK 500 HIS A 525 4.38 -150.57 REMARK 500 PRO A 553 -85.14 -42.46 REMARK 500 SER A 571 38.32 -83.50 REMARK 500 SER A 605 40.82 -87.06 REMARK 500 SER A 689 -67.83 -91.94 REMARK 500 LEU A 721 40.48 -80.45 REMARK 500 ARG B 279 -63.15 -24.02 REMARK 500 SER B 333 38.33 -90.44 REMARK 500 SER B 401 33.93 -88.43 REMARK 500 SER B 435 49.64 -86.27 REMARK 500 SER B 469 56.74 -91.51 REMARK 500 VAL B 486 -82.46 -64.06 REMARK 500 SER B 503 38.89 -81.30 REMARK 500 PRO B 519 -71.22 -44.46 REMARK 500 SER B 537 35.45 -88.40 REMARK 500 GLN B 557 -63.95 -121.63 REMARK 500 SER B 571 39.35 -78.74 REMARK 500 HIS B 627 10.32 -140.76 REMARK 500 SER B 639 43.45 -96.27 REMARK 500 GLN B 659 -69.05 -129.04 REMARK 500 PRO B 691 135.57 -17.04 REMARK 500 PRO B 693 -67.02 -19.98 REMARK 500 ALA B 694 -25.55 -33.51 REMARK 500 LEU B 721 39.60 -88.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4OSH RELATED DB: PDB REMARK 900 RELATED ID: 4OSI RELATED DB: PDB REMARK 900 RELATED ID: 4OSJ RELATED DB: PDB REMARK 900 RELATED ID: 4OSL RELATED DB: PDB REMARK 900 RELATED ID: 4OSM RELATED DB: PDB REMARK 900 RELATED ID: 4OSQ RELATED DB: PDB REMARK 900 RELATED ID: 4OSR RELATED DB: PDB REMARK 900 RELATED ID: 4OSS RELATED DB: PDB REMARK 900 RELATED ID: 4OST RELATED DB: PDB REMARK 900 RELATED ID: 4OSV RELATED DB: PDB REMARK 900 RELATED ID: 4OSW RELATED DB: PDB REMARK 900 RELATED ID: 4OSZ RELATED DB: PDB REMARK 900 RELATED ID: 4OT0 RELATED DB: PDB REMARK 900 RELATED ID: 4OT3 RELATED DB: PDB REMARK 900 RELATED ID: 4OTO RELATED DB: PDB DBREF 4OSK A 231 720 UNP Q3ZD72 Q3ZD72_XANCA 231 720 DBREF 4OSK B 231 720 UNP Q3ZD72 Q3ZD72_XANCA 231 720 DBREF 4OSK I 1 17 PDB 4OSK 4OSK 1 17 DBREF 4OSK G 1 17 PDB 4OSK 4OSK 1 17 DBREF 4OSK J -1 15 PDB 4OSK 4OSK -1 15 DBREF 4OSK H -1 15 PDB 4OSK 4OSK -1 15 SEQADV 4OSK MET A 230 UNP Q3ZD72 EXPRESSION TAG SEQADV 4OSK HIS A 300 UNP Q3ZD72 ASN 300 ENGINEERED MUTATION SEQADV 4OSK ASP A 301 UNP Q3ZD72 ILE 301 ENGINEERED MUTATION SEQADV 4OSK SER A 369 UNP Q3ZD72 ILE 369 ENGINEERED MUTATION SEQADV 4OSK ASN A 402 UNP Q3ZD72 HIS 402 ENGINEERED MUTATION SEQADV 4OSK SER A 403 UNP Q3ZD72 ASP 403 ENGINEERED MUTATION SEQADV 4OSK ASN A 470 UNP Q3ZD72 HIS 470 ENGINEERED MUTATION SEQADV 4OSK GLY A 471 UNP Q3ZD72 ASP 471 ENGINEERED MUTATION SEQADV 4OSK HIS A 538 UNP Q3ZD72 ASN 538 ENGINEERED MUTATION SEQADV 4OSK ASP A 539 UNP Q3ZD72 SER 539 ENGINEERED MUTATION SEQADV 4OSK GLY A 573 UNP Q3ZD72 SER 573 ENGINEERED MUTATION SEQADV 4OSK ASN A 606 UNP Q3ZD72 HIS 606 ENGINEERED MUTATION SEQADV 4OSK SER A 607 UNP Q3ZD72 ASP 607 ENGINEERED MUTATION SEQADV 4OSK ASN A 641 UNP Q3ZD72 ILE 641 ENGINEERED MUTATION SEQADV 4OSK SER A 675 UNP Q3ZD72 GLY 675 ENGINEERED MUTATION SEQADV 4OSK LEU A 721 UNP Q3ZD72 EXPRESSION TAG SEQADV 4OSK GLU A 722 UNP Q3ZD72 EXPRESSION TAG SEQADV 4OSK HIS A 723 UNP Q3ZD72 EXPRESSION TAG SEQADV 4OSK HIS A 724 UNP Q3ZD72 EXPRESSION TAG SEQADV 4OSK HIS A 725 UNP Q3ZD72 EXPRESSION TAG SEQADV 4OSK HIS A 726 UNP Q3ZD72 EXPRESSION TAG SEQADV 4OSK HIS A 727 UNP Q3ZD72 EXPRESSION TAG SEQADV 4OSK HIS A 728 UNP Q3ZD72 EXPRESSION TAG SEQADV 4OSK MET B 230 UNP Q3ZD72 EXPRESSION TAG SEQADV 4OSK HIS B 300 UNP Q3ZD72 ASN 300 ENGINEERED MUTATION SEQADV 4OSK ASP B 301 UNP Q3ZD72 ILE 301 ENGINEERED MUTATION SEQADV 4OSK SER B 369 UNP Q3ZD72 ILE 369 ENGINEERED MUTATION SEQADV 4OSK ASN B 402 UNP Q3ZD72 HIS 402 ENGINEERED MUTATION SEQADV 4OSK SER B 403 UNP Q3ZD72 ASP 403 ENGINEERED MUTATION SEQADV 4OSK ASN B 470 UNP Q3ZD72 HIS 470 ENGINEERED MUTATION SEQADV 4OSK GLY B 471 UNP Q3ZD72 ASP 471 ENGINEERED MUTATION SEQADV 4OSK HIS B 538 UNP Q3ZD72 ASN 538 ENGINEERED MUTATION SEQADV 4OSK ASP B 539 UNP Q3ZD72 SER 539 ENGINEERED MUTATION SEQADV 4OSK GLY B 573 UNP Q3ZD72 SER 573 ENGINEERED MUTATION SEQADV 4OSK ASN B 606 UNP Q3ZD72 HIS 606 ENGINEERED MUTATION SEQADV 4OSK SER B 607 UNP Q3ZD72 ASP 607 ENGINEERED MUTATION SEQADV 4OSK ASN B 641 UNP Q3ZD72 ILE 641 ENGINEERED MUTATION SEQADV 4OSK SER B 675 UNP Q3ZD72 GLY 675 ENGINEERED MUTATION SEQADV 4OSK LEU B 721 UNP Q3ZD72 EXPRESSION TAG SEQADV 4OSK GLU B 722 UNP Q3ZD72 EXPRESSION TAG SEQADV 4OSK HIS B 723 UNP Q3ZD72 EXPRESSION TAG SEQADV 4OSK HIS B 724 UNP Q3ZD72 EXPRESSION TAG SEQADV 4OSK HIS B 725 UNP Q3ZD72 EXPRESSION TAG SEQADV 4OSK HIS B 726 UNP Q3ZD72 EXPRESSION TAG SEQADV 4OSK HIS B 727 UNP Q3ZD72 EXPRESSION TAG SEQADV 4OSK HIS B 728 UNP Q3ZD72 EXPRESSION TAG SEQRES 1 A 499 MET GLN TRP SER GLY ALA ARG ALA LEU GLU ALA LEU LEU SEQRES 2 A 499 THR VAL ALA GLY GLU LEU ARG GLY PRO PRO LEU GLN LEU SEQRES 3 A 499 ASP THR GLY GLN LEU LEU LYS ILE ALA LYS ARG GLY GLY SEQRES 4 A 499 VAL THR ALA VAL GLU ALA VAL HIS ALA TRP ARG ASN ALA SEQRES 5 A 499 LEU THR GLY ALA PRO LEU ASN LEU THR PRO GLU GLN VAL SEQRES 6 A 499 VAL ALA ILE ALA SER HIS ASP GLY GLY LYS GLN ALA LEU SEQRES 7 A 499 GLU THR VAL GLN ARG LEU LEU PRO VAL LEU CYS GLN ALA SEQRES 8 A 499 HIS GLY LEU THR PRO GLN GLN VAL VAL ALA ILE ALA SER SEQRES 9 A 499 HIS ASP GLY GLY LYS GLN ALA LEU GLU THR VAL GLN ARG SEQRES 10 A 499 LEU LEU PRO VAL LEU CYS GLN ALA HIS GLY LEU THR PRO SEQRES 11 A 499 GLU GLN VAL VAL ALA ILE ALA SER ASN SER GLY GLY LYS SEQRES 12 A 499 GLN ALA LEU GLU THR VAL GLN ALA LEU LEU PRO VAL LEU SEQRES 13 A 499 CYS GLN ALA HIS GLY LEU THR PRO GLU GLN VAL VAL ALA SEQRES 14 A 499 ILE ALA SER ASN SER GLY GLY LYS GLN ALA LEU GLU THR SEQRES 15 A 499 VAL GLN ARG LEU LEU PRO VAL LEU CYS GLN ALA HIS GLY SEQRES 16 A 499 LEU THR PRO GLN GLN VAL VAL ALA ILE ALA SER HIS ASP SEQRES 17 A 499 GLY GLY LYS GLN ALA LEU GLU THR VAL GLN ARG LEU LEU SEQRES 18 A 499 PRO VAL LEU CYS GLN ALA HIS GLY LEU THR PRO GLN GLN SEQRES 19 A 499 VAL VAL ALA ILE ALA SER ASN GLY GLY GLY LYS GLN ALA SEQRES 20 A 499 LEU GLU THR VAL GLN ARG LEU LEU PRO VAL LEU CYS GLN SEQRES 21 A 499 ALA HIS GLY LEU THR PRO GLN GLN VAL VAL ALA ILE ALA SEQRES 22 A 499 SER ASN SER GLY GLY LYS GLN ALA LEU GLU THR VAL GLN SEQRES 23 A 499 ARG LEU LEU PRO VAL LEU CYS GLN ALA HIS GLY LEU THR SEQRES 24 A 499 PRO GLN GLN VAL VAL ALA ILE ALA SER HIS ASP GLY GLY SEQRES 25 A 499 LYS GLN ALA LEU GLU THR VAL GLN ARG LEU LEU PRO VAL SEQRES 26 A 499 LEU CYS GLN ALA HIS GLY LEU THR PRO GLN GLN VAL VAL SEQRES 27 A 499 ALA ILE ALA SER ASN GLY GLY GLY LYS GLN ALA LEU GLU SEQRES 28 A 499 THR VAL GLN ARG LEU LEU PRO VAL LEU CYS GLN ALA HIS SEQRES 29 A 499 GLY LEU THR PRO GLU GLN VAL VAL ALA ILE ALA SER ASN SEQRES 30 A 499 SER GLY GLY LYS GLN ALA LEU GLU THR VAL GLN ARG LEU SEQRES 31 A 499 LEU PRO VAL LEU CYS GLN ALA HIS GLY LEU THR PRO GLU SEQRES 32 A 499 GLN VAL VAL ALA ILE ALA SER ASN ASN GLY GLY LYS GLN SEQRES 33 A 499 ALA LEU GLU THR VAL GLN ARG LEU LEU PRO VAL LEU CYS SEQRES 34 A 499 GLN ALA HIS GLY LEU THR PRO GLN GLN VAL VAL ALA ILE SEQRES 35 A 499 ALA SER ASN SER GLY GLY ARG PRO ALA LEU GLU SER ILE SEQRES 36 A 499 VAL ALA GLN LEU SER ARG PRO ASP PRO ALA LEU ALA ALA SEQRES 37 A 499 LEU THR ASN ASP HIS LEU VAL ALA LEU ALA CYS LEU GLY SEQRES 38 A 499 GLY ARG PRO ALA LEU ASP ALA VAL LYS LYS LEU GLU HIS SEQRES 39 A 499 HIS HIS HIS HIS HIS SEQRES 1 I 17 DT DG DT DC DC DA DA DC DT DA DC DT DA SEQRES 2 I 17 DG DA DC DT SEQRES 1 J 17 DA DG DT DC DT DA DG DT DA DG DT DT DG SEQRES 2 J 17 DG DA DC DA SEQRES 1 B 499 MET GLN TRP SER GLY ALA ARG ALA LEU GLU ALA LEU LEU SEQRES 2 B 499 THR VAL ALA GLY GLU LEU ARG GLY PRO PRO LEU GLN LEU SEQRES 3 B 499 ASP THR GLY GLN LEU LEU LYS ILE ALA LYS ARG GLY GLY SEQRES 4 B 499 VAL THR ALA VAL GLU ALA VAL HIS ALA TRP ARG ASN ALA SEQRES 5 B 499 LEU THR GLY ALA PRO LEU ASN LEU THR PRO GLU GLN VAL SEQRES 6 B 499 VAL ALA ILE ALA SER HIS ASP GLY GLY LYS GLN ALA LEU SEQRES 7 B 499 GLU THR VAL GLN ARG LEU LEU PRO VAL LEU CYS GLN ALA SEQRES 8 B 499 HIS GLY LEU THR PRO GLN GLN VAL VAL ALA ILE ALA SER SEQRES 9 B 499 HIS ASP GLY GLY LYS GLN ALA LEU GLU THR VAL GLN ARG SEQRES 10 B 499 LEU LEU PRO VAL LEU CYS GLN ALA HIS GLY LEU THR PRO SEQRES 11 B 499 GLU GLN VAL VAL ALA ILE ALA SER ASN SER GLY GLY LYS SEQRES 12 B 499 GLN ALA LEU GLU THR VAL GLN ALA LEU LEU PRO VAL LEU SEQRES 13 B 499 CYS GLN ALA HIS GLY LEU THR PRO GLU GLN VAL VAL ALA SEQRES 14 B 499 ILE ALA SER ASN SER GLY GLY LYS GLN ALA LEU GLU THR SEQRES 15 B 499 VAL GLN ARG LEU LEU PRO VAL LEU CYS GLN ALA HIS GLY SEQRES 16 B 499 LEU THR PRO GLN GLN VAL VAL ALA ILE ALA SER HIS ASP SEQRES 17 B 499 GLY GLY LYS GLN ALA LEU GLU THR VAL GLN ARG LEU LEU SEQRES 18 B 499 PRO VAL LEU CYS GLN ALA HIS GLY LEU THR PRO GLN GLN SEQRES 19 B 499 VAL VAL ALA ILE ALA SER ASN GLY GLY GLY LYS GLN ALA SEQRES 20 B 499 LEU GLU THR VAL GLN ARG LEU LEU PRO VAL LEU CYS GLN SEQRES 21 B 499 ALA HIS GLY LEU THR PRO GLN GLN VAL VAL ALA ILE ALA SEQRES 22 B 499 SER ASN SER GLY GLY LYS GLN ALA LEU GLU THR VAL GLN SEQRES 23 B 499 ARG LEU LEU PRO VAL LEU CYS GLN ALA HIS GLY LEU THR SEQRES 24 B 499 PRO GLN GLN VAL VAL ALA ILE ALA SER HIS ASP GLY GLY SEQRES 25 B 499 LYS GLN ALA LEU GLU THR VAL GLN ARG LEU LEU PRO VAL SEQRES 26 B 499 LEU CYS GLN ALA HIS GLY LEU THR PRO GLN GLN VAL VAL SEQRES 27 B 499 ALA ILE ALA SER ASN GLY GLY GLY LYS GLN ALA LEU GLU SEQRES 28 B 499 THR VAL GLN ARG LEU LEU PRO VAL LEU CYS GLN ALA HIS SEQRES 29 B 499 GLY LEU THR PRO GLU GLN VAL VAL ALA ILE ALA SER ASN SEQRES 30 B 499 SER GLY GLY LYS GLN ALA LEU GLU THR VAL GLN ARG LEU SEQRES 31 B 499 LEU PRO VAL LEU CYS GLN ALA HIS GLY LEU THR PRO GLU SEQRES 32 B 499 GLN VAL VAL ALA ILE ALA SER ASN ASN GLY GLY LYS GLN SEQRES 33 B 499 ALA LEU GLU THR VAL GLN ARG LEU LEU PRO VAL LEU CYS SEQRES 34 B 499 GLN ALA HIS GLY LEU THR PRO GLN GLN VAL VAL ALA ILE SEQRES 35 B 499 ALA SER ASN SER GLY GLY ARG PRO ALA LEU GLU SER ILE SEQRES 36 B 499 VAL ALA GLN LEU SER ARG PRO ASP PRO ALA LEU ALA ALA SEQRES 37 B 499 LEU THR ASN ASP HIS LEU VAL ALA LEU ALA CYS LEU GLY SEQRES 38 B 499 GLY ARG PRO ALA LEU ASP ALA VAL LYS LYS LEU GLU HIS SEQRES 39 B 499 HIS HIS HIS HIS HIS SEQRES 1 G 17 DT DG DT DC DC DA DA DC DT DA DC DT DA SEQRES 2 G 17 DG DA DC DT SEQRES 1 H 17 DA DG DT DC DT DA DG DT DA DG DT DT DG SEQRES 2 H 17 DG DA DC DA FORMUL 7 HOH *260(H2 O) HELIX 1 1 GLY A 234 ARG A 249 1 16 HELIX 2 2 ASP A 256 THR A 283 1 28 HELIX 3 3 THR A 290 SER A 299 1 10 HELIX 4 4 GLY A 302 GLY A 322 1 21 HELIX 5 5 THR A 324 SER A 333 1 10 HELIX 6 6 GLY A 336 HIS A 355 1 20 HELIX 7 7 THR A 358 SER A 367 1 10 HELIX 8 8 GLY A 370 ALA A 388 1 19 HELIX 9 9 THR A 392 SER A 401 1 10 HELIX 10 10 GLY A 404 ALA A 422 1 19 HELIX 11 11 THR A 426 SER A 435 1 10 HELIX 12 12 GLY A 438 ALA A 456 1 19 HELIX 13 13 THR A 460 SER A 469 1 10 HELIX 14 14 GLY A 472 GLN A 489 1 18 HELIX 15 15 THR A 494 SER A 503 1 10 HELIX 16 16 GLY A 506 CYS A 522 1 17 HELIX 17 17 THR A 528 SER A 537 1 10 HELIX 18 18 GLY A 540 ALA A 558 1 19 HELIX 19 19 THR A 562 ALA A 570 1 9 HELIX 20 20 GLY A 574 GLY A 594 1 21 HELIX 21 21 THR A 596 SER A 605 1 10 HELIX 22 22 GLY A 608 ALA A 626 1 19 HELIX 23 23 THR A 630 SER A 639 1 10 HELIX 24 24 GLY A 642 ALA A 660 1 19 HELIX 25 25 THR A 664 SER A 673 1 10 HELIX 26 26 GLY A 676 ARG A 690 1 15 HELIX 27 27 ASP A 692 ALA A 696 5 5 HELIX 28 28 THR A 699 LEU A 721 1 23 HELIX 29 29 ALA B 235 GLY B 250 1 16 HELIX 30 30 ASP B 256 GLY B 267 1 12 HELIX 31 31 GLY B 267 GLY B 284 1 18 HELIX 32 32 THR B 290 SER B 299 1 10 HELIX 33 33 GLY B 302 GLY B 322 1 21 HELIX 34 34 THR B 324 SER B 333 1 10 HELIX 35 35 GLY B 336 ALA B 354 1 19 HELIX 36 36 THR B 358 SER B 367 1 10 HELIX 37 37 GLY B 370 ALA B 388 1 19 HELIX 38 38 THR B 392 SER B 401 1 10 HELIX 39 39 GLY B 404 HIS B 423 1 20 HELIX 40 40 THR B 426 SER B 435 1 10 HELIX 41 41 GLY B 438 GLN B 455 1 18 HELIX 42 42 THR B 460 SER B 469 1 10 HELIX 43 43 GLY B 472 CYS B 488 1 17 HELIX 44 44 THR B 494 SER B 503 1 10 HELIX 45 45 GLY B 506 ALA B 524 1 19 HELIX 46 46 THR B 528 SER B 537 1 10 HELIX 47 47 GLY B 540 CYS B 556 1 17 HELIX 48 48 THR B 562 SER B 571 1 10 HELIX 49 49 GLY B 574 HIS B 593 1 20 HELIX 50 50 THR B 596 SER B 605 1 10 HELIX 51 51 GLY B 608 HIS B 627 1 20 HELIX 52 52 THR B 630 SER B 639 1 10 HELIX 53 53 GLY B 642 CYS B 658 1 17 HELIX 54 54 THR B 664 SER B 673 1 10 HELIX 55 55 GLY B 676 LEU B 688 1 13 HELIX 56 56 ASP B 692 ALA B 697 1 6 HELIX 57 57 THR B 699 LEU B 721 1 23 CISPEP 1 PRO A 251 PRO A 252 0 -3.60 CISPEP 2 ALA A 285 PRO A 286 0 1.26 CISPEP 3 PRO B 251 PRO B 252 0 5.32 CISPEP 4 ALA B 285 PRO B 286 0 12.10 CRYST1 84.633 88.129 90.476 90.00 104.96 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011816 0.000000 0.003157 0.00000 SCALE2 0.000000 0.011347 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011440 0.00000