HEADER TRANSCRIPTION 13-FEB-14 4OT9 TITLE CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF P100/NF-KB2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR FACTOR NF-KAPPA-B P100 SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DNA-BINDING FACTOR KBF2, H2TF1, LYMPHOCYTE TRANSLOCATION COMPND 5 CHROMOSOME 10 PROTEIN, NUCLEAR FACTOR OF KAPPA LIGHT POLYPEPTIDE GENE COMPND 6 ENHANCER IN B-CELLS 2, ONCOGENE LYT-10, LYT10, NUCLEAR FACTOR NF- COMPND 7 KAPPA-B P52 SUBUNIT; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NFKB2, LYT10; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NF-KB TRANSCRIPTION FACTOR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR Z.H.TAO,D.B.HUANG,A.FUSCO,K.GUPTA,C.F.WARE,G.V.DUYNNE REVDAT 2 28-FEB-24 4OT9 1 REMARK REVDAT 1 14-JAN-15 4OT9 0 JRNL AUTH Z.TAO,A.FUSCO,D.B.HUANG,K.GUPTA,D.YOUNG KIM,C.F.WARE, JRNL AUTH 2 G.D.VAN DUYNE,G.GHOSH JRNL TITL P100/I KAPPA B DELTA SEQUESTERS AND INHIBITS NF-KAPPA B JRNL TITL 2 THROUGH KAPPABSOME FORMATION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 111 15946 2014 JRNL REFN ISSN 0027-8424 JRNL PMID 25349408 JRNL DOI 10.1073/PNAS.1408552111 REMARK 2 REMARK 2 RESOLUTION. 3.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.3 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 61874.410 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.6 REMARK 3 NUMBER OF REFLECTIONS : 10842 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 568 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.011 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.34 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.55 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1406 REMARK 3 BIN R VALUE (WORKING SET) : 0.3030 REMARK 3 BIN FREE R VALUE : 0.3470 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 76 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2214 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 126.4 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 15.14000 REMARK 3 B22 (A**2) : 15.14000 REMARK 3 B33 (A**2) : -30.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.39 REMARK 3 ESD FROM SIGMAA (A) : 0.57 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.50 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.58 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.000 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 20.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.820 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 22.300; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 27.220; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 36.130; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 36.600; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.30 REMARK 3 BSOL : 72.64 REMARK 3 REMARK 3 NCS MODEL : NONE REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 6 : AS.PARAM REMARK 3 PARAMETER FILE 7 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 6 : AS.TOP REMARK 3 TOPOLOGY FILE 7 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 4OT9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000084922. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 170.810 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : CRYO-COOLED DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10842 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.340 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 200 DATA REDUNDANCY : 9.400 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : 0.06700 REMARK 200 FOR THE DATA SET : 14.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.34 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.60 REMARK 200 R MERGE FOR SHELL (I) : 0.59000 REMARK 200 R SYM FOR SHELL (I) : 0.59000 REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MERLOT REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 4000, PH 7, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.23000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 34.23000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 34.23000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 34.23000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 34.23000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 34.23000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 98.33500 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 170.32122 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 34.23000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -34.23000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 407 REMARK 465 ALA A 408 REMARK 465 ALA A 409 REMARK 465 THR A 410 REMARK 465 VAL A 411 REMARK 465 PRO A 412 REMARK 465 SER A 413 REMARK 465 ARG A 414 REMARK 465 ASP A 415 REMARK 465 SER A 416 REMARK 465 GLY A 417 REMARK 465 GLU A 418 REMARK 465 GLU A 419 REMARK 465 ALA A 420 REMARK 465 ALA A 421 REMARK 465 GLU A 422 REMARK 465 PRO A 423 REMARK 465 SER A 424 REMARK 465 ALA A 425 REMARK 465 PRO A 426 REMARK 465 SER A 427 REMARK 465 ARG A 428 REMARK 465 THR A 429 REMARK 465 PRO A 430 REMARK 465 GLN A 431 REMARK 465 CYS A 432 REMARK 465 GLU A 433 REMARK 465 PRO A 434 REMARK 465 LEU A 702 REMARK 465 CYS A 703 REMARK 465 PRO A 704 REMARK 465 LEU A 705 REMARK 465 PRO A 706 REMARK 465 SER A 707 REMARK 465 PRO A 708 REMARK 465 PRO A 709 REMARK 465 THR A 710 REMARK 465 SER A 711 REMARK 465 ASP A 712 REMARK 465 SER A 713 REMARK 465 ASP A 714 REMARK 465 SER A 715 REMARK 465 ASP A 716 REMARK 465 SER A 717 REMARK 465 GLU A 718 REMARK 465 GLY A 719 REMARK 465 PRO A 720 REMARK 465 GLU A 721 REMARK 465 LYS A 722 REMARK 465 ASP A 723 REMARK 465 THR A 724 REMARK 465 ARG A 725 REMARK 465 PRO A 757 REMARK 465 LEU A 758 REMARK 465 THR A 759 REMARK 465 PRO A 760 REMARK 465 PRO A 761 REMARK 465 SER A 762 REMARK 465 PRO A 763 REMARK 465 ALA A 764 REMARK 465 GLY A 765 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 435 CG CD OE1 NE2 REMARK 470 PHE A 728 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 734 CG CD1 CD2 REMARK 470 CYS A 738 SG REMARK 470 LYS A 743 CG CD CE NZ REMARK 470 LEU A 746 CG CD1 CD2 REMARK 470 LEU A 747 CG CD1 CD2 REMARK 470 ASN A 748 CG OD1 ND2 REMARK 470 GLN A 751 CG CD OE1 NE2 REMARK 470 ASN A 752 CG OD1 ND2 REMARK 470 MET A 754 CG SD CE REMARK 470 GLU A 755 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 ND2 ASN A 447 ND2 ASN A 447 10665 1.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 436 -169.91 -109.28 REMARK 500 PRO A 437 22.44 -59.03 REMARK 500 ALA A 448 -77.21 -72.84 REMARK 500 LEU A 453 -70.66 -57.54 REMARK 500 THR A 467 -19.76 -141.30 REMARK 500 HIS A 479 32.10 -67.10 REMARK 500 LEU A 480 -15.09 -141.51 REMARK 500 LEU A 481 -9.21 -54.79 REMARK 500 GLN A 500 58.07 -65.45 REMARK 500 ILE A 504 -34.92 -38.26 REMARK 500 GLN A 515 -3.26 62.95 REMARK 500 ASP A 516 31.70 -73.51 REMARK 500 LEU A 517 22.28 -61.47 REMARK 500 ASN A 524 -163.19 -79.17 REMARK 500 ALA A 551 95.67 62.06 REMARK 500 LEU A 568 12.71 -53.05 REMARK 500 ALA A 570 142.32 172.08 REMARK 500 ALA A 574 100.45 -169.38 REMARK 500 SER A 584 139.26 59.50 REMARK 500 LEU A 592 43.83 -70.52 REMARK 500 LEU A 593 -1.57 -162.52 REMARK 500 HIS A 594 -168.21 -78.47 REMARK 500 PHE A 598 94.71 -56.35 REMARK 500 GLU A 599 28.72 40.15 REMARK 500 TYR A 602 158.20 -37.14 REMARK 500 SER A 622 30.95 -90.19 REMARK 500 ALA A 624 127.33 -175.28 REMARK 500 GLU A 627 38.06 -83.62 REMARK 500 GLN A 632 -91.70 -64.37 REMARK 500 GLU A 643 -77.60 -52.82 REMARK 500 THR A 655 -94.81 -89.20 REMARK 500 ARG A 658 42.81 37.35 REMARK 500 PRO A 681 -80.51 -45.32 REMARK 500 ALA A 696 142.78 -170.97 REMARK 500 ASN A 698 -82.05 -72.26 REMARK 500 GLU A 700 136.98 -30.66 REMARK 500 SER A 727 95.20 64.79 REMARK 500 PHE A 728 67.73 -170.83 REMARK 500 LEU A 734 -8.67 -59.58 REMARK 500 ASP A 735 -90.56 -82.56 REMARK 500 LEU A 736 93.28 -50.18 REMARK 500 THR A 753 101.75 58.51 REMARK 500 MET A 754 99.59 60.32 REMARK 500 GLU A 755 131.62 -173.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 802 DBREF 4OT9 A 413 765 UNP Q00653 NFKB2_HUMAN 407 765 SEQRES 1 A 359 MET ALA ALA THR VAL PRO SER ARG ASP SER GLY GLU GLU SEQRES 2 A 359 ALA ALA GLU PRO SER ALA PRO SER ARG THR PRO GLN CYS SEQRES 3 A 359 GLU PRO GLN ALA PRO GLU MET LEU GLN ARG ALA ARG GLU SEQRES 4 A 359 TYR ASN ALA ARG LEU PHE GLY LEU ALA GLN ARG SER ALA SEQRES 5 A 359 ARG ALA LEU LEU ASP TYR GLY VAL THR ALA ASP ALA ARG SEQRES 6 A 359 ALA LEU LEU ALA GLY GLN ARG HIS LEU LEU THR ALA GLN SEQRES 7 A 359 ASP GLU ASN GLY ASP THR PRO LEU HIS LEU ALA ILE ILE SEQRES 8 A 359 HIS GLY GLN THR SER VAL ILE GLU GLN ILE VAL TYR VAL SEQRES 9 A 359 ILE HIS HIS ALA GLN ASP LEU GLY VAL VAL ASN LEU THR SEQRES 10 A 359 ASN HIS LEU HIS GLN THR PRO LEU HIS LEU ALA VAL ILE SEQRES 11 A 359 THR GLY GLN THR SER VAL VAL SER PHE LEU LEU ARG VAL SEQRES 12 A 359 GLY ALA ASP PRO ALA LEU LEU ASP ARG HIS GLY ASP SER SEQRES 13 A 359 ALA MET HIS LEU ALA LEU ARG ALA GLY ALA GLY ALA PRO SEQRES 14 A 359 GLU LEU LEU ARG ALA LEU LEU GLN SER GLY ALA PRO ALA SEQRES 15 A 359 VAL PRO GLN LEU LEU HIS MET PRO ASP PHE GLU GLY LEU SEQRES 16 A 359 TYR PRO VAL HIS LEU ALA VAL ARG ALA ARG SER PRO GLU SEQRES 17 A 359 CYS LEU ASP LEU LEU VAL ASP SER GLY ALA GLU VAL GLU SEQRES 18 A 359 ALA THR GLU ARG GLN GLY GLY ARG THR ALA LEU HIS LEU SEQRES 19 A 359 ALA THR GLU MET GLU GLU LEU GLY LEU VAL THR HIS LEU SEQRES 20 A 359 VAL THR LYS LEU ARG ALA ASN VAL ASN ALA ARG THR PHE SEQRES 21 A 359 ALA GLY ASN THR PRO LEU HIS LEU ALA ALA GLY LEU GLY SEQRES 22 A 359 TYR PRO THR LEU THR ARG LEU LEU LEU LYS ALA GLY ALA SEQRES 23 A 359 ASP ILE HIS ALA GLU ASN GLU GLU PRO LEU CYS PRO LEU SEQRES 24 A 359 PRO SER PRO PRO THR SER ASP SER ASP SER ASP SER GLU SEQRES 25 A 359 GLY PRO GLU LYS ASP THR ARG SER SER PHE ARG GLY HIS SEQRES 26 A 359 THR PRO LEU ASP LEU THR CYS SER THR LYS VAL LYS THR SEQRES 27 A 359 LEU LEU LEU ASN ALA ALA GLN ASN THR MET GLU PRO PRO SEQRES 28 A 359 LEU THR PRO PRO SER PRO ALA GLY HET SO4 A 801 5 HET SO4 A 802 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 2(O4 S 2-) HELIX 1 1 GLU A 438 ALA A 468 1 31 HELIX 2 2 ASP A 469 GLY A 476 1 8 HELIX 3 3 GLN A 477 LEU A 481 5 5 HELIX 4 4 THR A 490 HIS A 498 1 9 HELIX 5 5 GLN A 500 HIS A 513 1 14 HELIX 6 6 GLY A 518 LEU A 522 5 5 HELIX 7 7 THR A 529 THR A 537 1 9 HELIX 8 8 GLN A 539 VAL A 549 1 11 HELIX 9 9 SER A 562 LEU A 568 1 7 HELIX 10 10 ALA A 574 GLN A 583 1 10 HELIX 11 11 GLY A 585 VAL A 589 5 5 HELIX 12 12 TYR A 602 ALA A 610 1 9 HELIX 13 13 SER A 612 SER A 622 1 11 HELIX 14 14 THR A 636 MET A 644 1 9 HELIX 15 15 GLU A 646 THR A 655 1 10 HELIX 16 16 THR A 670 GLY A 679 1 10 HELIX 17 17 TYR A 680 ALA A 690 1 11 HELIX 18 18 SER A 739 ASN A 752 1 14 SITE 1 AC1 3 ARG A 611 ARG A 685 LYS A 741 SITE 1 AC2 4 ARG A 635 THR A 665 ALA A 667 ASN A 669 CRYST1 196.670 196.670 68.460 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005085 0.002936 0.000000 0.00000 SCALE2 0.000000 0.005871 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014607 0.00000