HEADER VIRAL PROTEIN 14-FEB-14 4OTS TITLE CRYSTAL STRUCTURE OF ISOLATED OPEROPHTERA BRUMATA CPV18 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYHEDRIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OPEROPHTERA BRUMATA CYPOVIRUS 18; SOURCE 3 ORGANISM_TAXID: 352244; SOURCE 4 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 5 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: POPIN KEYWDS MICROCRYSTALS, POLYHEDRA, OCCLUSION BODY, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.I.STUART,G.C.SUTTON,D.AXFORD,X.JI REVDAT 3 06-NOV-24 4OTS 1 REMARK SEQADV LINK REVDAT 2 24-SEP-14 4OTS 1 JRNL REVDAT 1 14-MAY-14 4OTS 0 JRNL AUTH D.AXFORD,X.JI,D.I.STUART,G.SUTTON JRNL TITL IN CELLULO STRUCTURE DETERMINATION OF A NOVEL CYPOVIRUS JRNL TITL 2 POLYHEDRIN. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 70 1435 2014 JRNL REFN ISSN 0907-4449 JRNL PMID 24816111 JRNL DOI 10.1107/S1399004714004714 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.47 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 19327 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.102 REMARK 3 R VALUE (WORKING SET) : 0.100 REMARK 3 FREE R VALUE : 0.132 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 992 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.4764 - 3.2586 1.00 2784 143 0.0906 0.1066 REMARK 3 2 3.2586 - 2.5871 1.00 2698 155 0.0866 0.1153 REMARK 3 3 2.5871 - 2.2602 1.00 2687 147 0.0889 0.1029 REMARK 3 4 2.2602 - 2.0536 1.00 2645 159 0.0899 0.1454 REMARK 3 5 2.0536 - 1.9065 1.00 2689 144 0.1065 0.1445 REMARK 3 6 1.9065 - 1.7941 0.99 2608 146 0.1313 0.2001 REMARK 3 7 1.7941 - 1.7040 0.82 2224 98 0.1563 0.1896 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 11.180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2124 REMARK 3 ANGLE : 1.169 2901 REMARK 3 CHIRALITY : 0.045 291 REMARK 3 PLANARITY : 0.006 372 REMARK 3 DIHEDRAL : 17.923 778 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -20.9564 8.6787 -34.0137 REMARK 3 T TENSOR REMARK 3 T11: 0.0040 T22: 0.0075 REMARK 3 T33: 0.0096 T12: 0.0022 REMARK 3 T13: -0.0001 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.0028 L22: 0.0062 REMARK 3 L33: 0.0008 L12: -0.0004 REMARK 3 L13: 0.0002 L23: -0.0023 REMARK 3 S TENSOR REMARK 3 S11: 0.0009 S12: 0.0039 S13: -0.0025 REMARK 3 S21: 0.0004 S22: 0.0007 S23: 0.0015 REMARK 3 S31: 0.0015 S32: -0.0000 S33: 0.0017 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4OTS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000084938. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 20 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : FASTDP REMARK 200 DATA SCALING SOFTWARE : BLEND REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19343 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 72.686 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.340 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 23.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS FORMED NATURALLY WITHIN THE REMARK 280 CYTOPLASM AND WERE PURIFIED FROM CELLS, PH 7.5, TEMPERATURE 301K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 51.39700 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 51.39700 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 51.39700 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 51.39700 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 51.39700 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 51.39700 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 51.39700 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 51.39700 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 51.39700 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 51.39700 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 51.39700 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 51.39700 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 51.39700 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 51.39700 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 51.39700 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 51.39700 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 51.39700 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 51.39700 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 51.39700 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 51.39700 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 51.39700 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 51.39700 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 51.39700 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 51.39700 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 51.39700 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 51.39700 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 51.39700 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 51.39700 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 51.39700 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 51.39700 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 51.39700 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 51.39700 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 51.39700 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 51.39700 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 51.39700 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 51.39700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -104.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 597 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 623 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 638 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 640 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 149 O HOH A 565 2.13 REMARK 500 O HOH A 573 O HOH A 629 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 508 O HOH A 562 23444 2.12 REMARK 500 O HOH A 555 O HOH A 555 2455 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 57 -50.03 72.22 REMARK 500 SER A 131 37.71 70.95 REMARK 500 ASP A 135 -53.60 70.26 REMARK 500 TYR A 224 -71.20 -124.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 304 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GTP A 302 O2G REMARK 620 2 GTP A 302 O2B 85.9 REMARK 620 3 GTP A 302 O2A 95.5 67.7 REMARK 620 4 HOH A 511 O 153.2 71.9 62.7 REMARK 620 5 HOH A 527 O 96.0 154.5 86.8 97.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTP A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4OTV RELATED DB: PDB DBREF 4OTS A 2 248 UNP Q30C70 Q30C70_9REOV 2 248 SEQADV 4OTS ACE A 1 UNP Q30C70 ACETYLATION SEQRES 1 A 248 ACE ALA ASP VAL ALA GLY THR SER ASN ARG ASP PHE ARG SEQRES 2 A 248 GLY ARG GLU GLN ARG LEU TYR ASN SER GLU GLN TYR ASN SEQRES 3 A 248 TYR ASN ASN SER LEU ASN GLY GLU VAL SER LEU TRP VAL SEQRES 4 A 248 TYR ALA TYR TYR SER ASP GLY SER VAL LEU VAL ARG ASN SEQRES 5 A 248 CYS ASN SER GLN TYR LYS VAL GLY ILE SER GLU CYS PHE SEQRES 6 A 248 LYS SER LEU LYS GLU VAL ARG VAL GLY GLN ASN ASN ASP SEQRES 7 A 248 PRO TYR ASP GLU GLN GLU VAL ASN ASN GLY VAL TYR TYR SEQRES 8 A 248 PRO ASN GLY GLY GLU PRO THR LYS PHE HIS SER ASN ALA SEQRES 9 A 248 LYS PRO ARG ALA ILE GLN ILE ILE PHE SER PRO SER VAL SEQRES 10 A 248 ASN VAL HIS THR ILE LYS MET ALA LYS GLY ASN SER VAL SEQRES 11 A 248 SER ILE PRO LYS ASP TYR LEU GLN ARG SER HIS PRO TRP SEQRES 12 A 248 GLU ALA THR GLY VAL LYS TYR ARG LYS ILE HIS VAL ASP SEQRES 13 A 248 GLY GLU ILE VAL GLY TYR SER HIS TYR PHE GLU LEU PRO SEQRES 14 A 248 HIS GLU TYR ASN SER ILE SER LEU SER VAL SER GLY VAL SEQRES 15 A 248 HIS LYS ASN PRO SER SER TYR ASN VAL ALA ALA PRO HIS SEQRES 16 A 248 ASN ILE MET ASP VAL PHE GLN SER CYS ASP LEU ALA LEU SEQRES 17 A 248 LYS PHE SER ASN ARG TYR TRP CYS GLU LEU GLU LEU ILE SEQRES 18 A 248 ASN HIS TYR ILE SER ALA TYR ALA TYR PRO TYR LEU ASP SEQRES 19 A 248 ILE ASN ASN HIS LYS TYR GLY VAL PRO LEU ASN GLY ARG SEQRES 20 A 248 GLN HET ACE A 1 3 HET CL A 301 1 HET GTP A 302 42 HET ATP A 303 43 HET MG A 304 1 HETNAM ACE ACETYL GROUP HETNAM CL CHLORIDE ION HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 1 ACE C2 H4 O FORMUL 2 CL CL 1- FORMUL 3 GTP C10 H16 N5 O14 P3 FORMUL 4 ATP C10 H16 N5 O13 P3 FORMUL 5 MG MG 2+ FORMUL 6 HOH *241(H2 O) HELIX 1 1 ASP A 11 SER A 30 1 20 HELIX 2 2 ASP A 78 TYR A 91 1 14 HELIX 3 3 TYR A 136 SER A 140 5 5 HELIX 4 4 THR A 146 TYR A 150 5 5 HELIX 5 5 ASN A 196 ALA A 207 1 12 HELIX 6 6 CYS A 216 TYR A 224 1 9 SHEET 1 A 6 ARG A 151 VAL A 155 0 SHEET 2 A 6 GLU A 158 GLU A 167 -1 O SER A 163 N ARG A 151 SHEET 3 A 6 ALA A 108 PHE A 113 -1 N ILE A 111 O HIS A 164 SHEET 4 A 6 GLU A 34 TYR A 42 -1 N TYR A 40 O GLN A 110 SHEET 5 A 6 VAL A 48 GLN A 56 -1 O ARG A 51 N VAL A 39 SHEET 6 A 6 LEU A 208 TYR A 214 -1 O PHE A 210 N ASN A 52 SHEET 1 B 3 LYS A 58 GLU A 63 0 SHEET 2 B 3 SER A 176 HIS A 183 -1 O LEU A 177 N GLU A 63 SHEET 3 B 3 VAL A 117 GLY A 127 -1 N LYS A 123 O SER A 180 SHEET 1 C 2 TYR A 232 LEU A 233 0 SHEET 2 C 2 LYS A 239 TYR A 240 -1 O TYR A 240 N TYR A 232 LINK C ACE A 1 N ALA A 2 1555 1555 1.33 LINK O2G GTP A 302 MG MG A 304 1555 1555 2.03 LINK O2B GTP A 302 MG MG A 304 1555 1555 2.10 LINK O2A GTP A 302 MG MG A 304 1555 1555 2.63 LINK MG MG A 304 O HOH A 511 1555 1555 2.15 LINK MG MG A 304 O HOH A 527 1555 1555 2.47 SITE 1 AC1 3 ALA A 2 LEU A 31 HOH A 409 SITE 1 AC2 16 ASN A 9 ARG A 10 ARG A 18 HIS A 170 SITE 2 AC2 16 TYR A 172 ASN A 173 LYS A 184 ATP A 303 SITE 3 AC2 16 MG A 304 HOH A 442 HOH A 511 HOH A 534 SITE 4 AC2 16 HOH A 542 HOH A 544 HOH A 567 HOH A 599 SITE 1 AC3 16 TYR A 25 LYS A 152 HIS A 154 ASP A 156 SITE 2 AC3 16 GLY A 157 ILE A 159 LYS A 184 GTP A 302 SITE 3 AC3 16 HOH A 498 HOH A 520 HOH A 554 HOH A 576 SITE 4 AC3 16 HOH A 582 HOH A 586 HOH A 599 HOH A 634 SITE 1 AC4 3 GTP A 302 HOH A 511 HOH A 527 CRYST1 102.794 102.794 102.794 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009728 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009728 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009728 0.00000 HETATM 1 C ACE A 1 -62.225 -16.678 -42.142 1.00 7.38 C ANISOU 1 C ACE A 1 883 917 1006 7 -26 -14 C HETATM 2 O ACE A 1 -62.588 -16.047 -43.141 1.00 8.72 O ANISOU 2 O ACE A 1 1051 1087 1174 6 -27 -14 O HETATM 3 CH3 ACE A 1 -63.048 -17.796 -41.557 1.00 6.22 C ANISOU 3 CH3 ACE A 1 734 767 861 6 -26 -14 C