HEADER HYDROLASE 14-FEB-14 4OTT TITLE CRYSTAL STRUCTURE OF THE GAMMA-GLUTAMYLTRANSPEPTIDASE FROM BACILLUS TITLE 2 LICHENIFORMIS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: GAMMA GLUTAMYL TRANSPEPTIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.3.2.2; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: GAMMA-GLUTAMYLTRANSPEPTIDASE; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: GAMMA-GLUTAMYLTRANSPEPTIDASE GGT; COMPND 10 EC: 2.3.2.2; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS LICHENIFORMIS; SOURCE 3 ORGANISM_TAXID: 1402; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: BACILLUS LICHENIFORMIS; SOURCE 8 ORGANISM_TAXID: 279010; SOURCE 9 STRAIN: DSM 13 / ATCC 14580; SOURCE 10 GENE: GGT, BL03798, BLI01364; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NTN HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.MERLINO REVDAT 2 20-SEP-23 4OTT 1 REMARK LINK REVDAT 1 23-JUL-14 4OTT 0 JRNL AUTH L.L.LIN,Y.Y.CHEN,M.C.CHI,A.MERLINO JRNL TITL LOW RESOLUTION X-RAY STRUCTURE OF JRNL TITL 2 GAMMA-GLUTAMYLTRANSPEPTIDASE FROM BACILLUS LICHENIFORMIS: JRNL TITL 3 OPENED ACTIVE SITE CLEFT AND A CLUSTER OF ACID RESIDUES JRNL TITL 4 POTENTIALLY INVOLVED IN THE RECOGNITION OF A METAL ION. JRNL REF BIOCHIM.BIOPHYS.ACTA V.1844 1523 2014 JRNL REFN ISSN 0006-3002 JRNL PMID 24780583 JRNL DOI 10.1016/J.BBAPAP.2014.04.016 REMARK 2 REMARK 2 RESOLUTION. 2.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 11102 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 548 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.98 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 589 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 71.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.2850 REMARK 3 BIN FREE R VALUE SET COUNT : 25 REMARK 3 BIN FREE R VALUE : 0.3600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4153 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 4 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.51000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : 1.47000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.101 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.326 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.415 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.904 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.831 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4261 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4003 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5768 ; 1.686 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9281 ; 0.914 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 537 ; 7.552 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 191 ;40.764 ;25.026 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 724 ;21.217 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;18.672 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 624 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4839 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 911 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2154 ; 1.933 ; 3.818 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2153 ; 1.930 ; 3.818 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2689 ; 3.189 ; 5.723 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2690 ; 3.189 ; 5.724 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2107 ; 1.831 ; 3.946 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2108 ; 1.831 ; 3.947 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3080 ; 3.099 ; 5.842 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 11067 ; 5.896 ;36.954 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 11068 ; 5.896 ;36.955 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.858 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : K, H, -L REMARK 3 TWIN FRACTION : 0.142 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4OTT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000084939. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11668 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB CODE 3A75 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN CONCENTRATION 20 MG/ML, 20% REMARK 280 PEG3350, 0.2 M MGCL2, 0.2 M TRIS-HCL, PH 8.2, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.44800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.12250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.98400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.12250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.44800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.98400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -108.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 ARG A 3 REMARK 465 LEU A 4 REMARK 465 ALA A 5 REMARK 465 PHE A 6 REMARK 465 LEU A 7 REMARK 465 VAL A 8 REMARK 465 VAL A 9 REMARK 465 ALA A 10 REMARK 465 PHE A 11 REMARK 465 CYS A 12 REMARK 465 LEU A 13 REMARK 465 ALA A 14 REMARK 465 VAL A 15 REMARK 465 GLY A 16 REMARK 465 CYS A 17 REMARK 465 PHE A 18 REMARK 465 PHE A 19 REMARK 465 SER A 20 REMARK 465 PRO A 21 REMARK 465 VAL A 22 REMARK 465 SER A 23 REMARK 465 LYS A 24 REMARK 465 ALA A 25 REMARK 465 GLU A 26 REMARK 465 GLY A 27 REMARK 465 VAL A 28 REMARK 465 MET A 29 REMARK 465 SER A 30 REMARK 465 GLY A 31 REMARK 465 GLY A 32 REMARK 465 ASP A 33 REMARK 465 GLY A 34 REMARK 465 GLU A 392 REMARK 465 ASP A 393 REMARK 465 LYS A 394 REMARK 465 THR A 395 REMARK 465 ILE A 396 REMARK 465 GLY A 397 REMARK 465 GLU A 398 REMARK 465 LYS B 581 REMARK 465 THR B 582 REMARK 465 SER B 583 REMARK 465 ALA B 584 REMARK 465 LYS B 585 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 35 OD1 OD2 REMARK 470 LYS A 36 CD CE NZ REMARK 470 VAL A 37 CB CG1 CG2 REMARK 470 LYS A 54 CD CE NZ REMARK 470 THR A 173 OG1 CG2 REMARK 470 MET A 221 CE REMARK 470 ILE B 580 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 221 CG MET A 221 SD -0.286 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 53 N - CA - C ANGL. DEV. = 16.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 54 -89.21 62.94 REMARK 500 LYS A 62 40.33 -96.31 REMARK 500 GLU A 99 -91.17 131.16 REMARK 500 PRO A 130 132.51 -31.95 REMARK 500 LYS A 155 -47.24 113.02 REMARK 500 THR A 159 48.08 -148.28 REMARK 500 LYS A 161 -145.95 80.43 REMARK 500 MET A 162 55.54 -97.38 REMARK 500 ASP A 206 -109.15 -115.63 REMARK 500 ASP A 238 35.90 -154.55 REMARK 500 HIS A 305 57.80 36.09 REMARK 500 ASP A 364 40.09 -103.90 REMARK 500 SER A 365 161.59 139.69 REMARK 500 ASP A 369 57.35 -103.86 REMARK 500 GLU B 419 -121.93 89.15 REMARK 500 GLN B 420 152.79 -44.86 REMARK 500 GLU B 438 -35.51 -37.87 REMARK 500 ASN B 450 40.36 -105.49 REMARK 500 ASN B 455 -4.39 75.27 REMARK 500 THR B 463 49.07 -140.15 REMARK 500 GLU B 471 -8.45 66.98 REMARK 500 ASN B 550 80.88 -169.08 REMARK 500 ASN B 572 34.88 -89.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 53 LYS A 54 78.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4OTU RELATED DB: PDB DBREF 4OTT A 1 398 UNP A9YTT0 A9YTT0_BACLI 1 398 DBREF 4OTT B 399 585 UNP Q65KZ6 Q65KZ6_BACLD 399 585 SEQRES 1 A 398 MET ARG ARG LEU ALA PHE LEU VAL VAL ALA PHE CYS LEU SEQRES 2 A 398 ALA VAL GLY CYS PHE PHE SER PRO VAL SER LYS ALA GLU SEQRES 3 A 398 GLY VAL MET SER GLY GLY ASP GLY ASP LYS VAL ALA VAL SEQRES 4 A 398 GLY LYS ASP GLY MET VAL ALA THR ALA HIS PRO LEU ALA SEQRES 5 A 398 SER LYS ILE GLY ALA GLU VAL LEU LYS LYS GLY GLY ASN SEQRES 6 A 398 ALA ILE ASP ALA ALA ILE ALA ILE GLN TYR ALA LEU ASN SEQRES 7 A 398 VAL THR GLU PRO MET MET SER GLY ILE GLY GLY GLY GLY SEQRES 8 A 398 PHE MET MET VAL TYR ASP GLY GLU THR LYS GLU THR SER SEQRES 9 A 398 ILE ILE ASN SER ARG GLU ARG ALA PRO GLU GLY ALA LYS SEQRES 10 A 398 PRO ASP MET PHE LEU ASP GLU ASP GLY LYS VAL ILE PRO SEQRES 11 A 398 PHE SER GLU ARG SER ARG HIS GLY ASN ALA VAL GLY VAL SEQRES 12 A 398 PRO GLY THR LEU LYS GLY LEU GLU ALA ALA HIS LYS LYS SEQRES 13 A 398 TRP GLY THR LYS LYS MET GLU ASP LEU ILE SER PRO SER SEQRES 14 A 398 ILE LYS LEU THR GLU GLU GLY PHE PRO ILE ASP SER VAL SEQRES 15 A 398 LEU ALA ASP ALA ILE LYS ASP HIS GLN ASP LYS LEU SER SEQRES 16 A 398 LYS THR ALA ALA LYS ASP ILE PHE LEU PRO ASP GLY GLU SEQRES 17 A 398 PRO LEU LYS GLU GLY ASP ILE LEU VAL GLN LYS ASP MET SEQRES 18 A 398 ALA LYS THR PHE LYS LEU ILE ARG LYS GLU GLY SER LYS SEQRES 19 A 398 ALA PHE TYR ASP GLY GLU ILE GLY ARG ALA ILE ALA ASP SEQRES 20 A 398 VAL VAL GLN ASP PHE GLY GLY SER MET THR PRO ASP ASP SEQRES 21 A 398 LEU SER ARG TYR GLU VAL THR THR ASP LYS PRO ILE TRP SEQRES 22 A 398 GLY GLU TYR HIS GLY TYR ASP ILE ALA SER MET PRO PRO SEQRES 23 A 398 PRO SER SER GLY GLY VAL PHE MET LEU GLN MET LEU LYS SEQRES 24 A 398 LEU ILE ASP ASP PHE HIS LEU SER GLN TYR ASP PRO LYS SEQRES 25 A 398 SER PHE GLU LYS TYR HIS LEU LEU ALA GLU THR MET HIS SEQRES 26 A 398 LEU SER TYR ALA ASP ARG ALA ALA TYR ALA GLY ASP PRO SEQRES 27 A 398 GLU PHE VAL ASP VAL PRO LEU ARG GLY LEU LEU ASP PRO SEQRES 28 A 398 ASP TYR ILE LYS GLU ARG GLN LYS LEU ILE SER LEU ASP SEQRES 29 A 398 SER MET ASN ARG ASP VAL LYS GLU GLY ASP PRO TRP LYS SEQRES 30 A 398 TYR GLU GLU GLY GLU PRO ASN TYR GLU ILE VAL PRO GLN SEQRES 31 A 398 PRO GLU ASP LYS THR ILE GLY GLU SEQRES 1 B 187 THR THR HIS PHE THR VAL THR ASP GLN TRP GLY ASN VAL SEQRES 2 B 187 VAL SER TYR THR THR THR ILE GLU GLN LEU PHE GLY THR SEQRES 3 B 187 GLY ILE LEU VAL PRO GLY TYR GLY LEU PHE LEU ASN ASN SEQRES 4 B 187 GLU LEU THR ASP PHE ASP ALA ILE PRO GLY GLY ALA ASN SEQRES 5 B 187 GLU VAL GLN PRO ASN LYS ARG PRO LEU SER SER MET THR SEQRES 6 B 187 PRO THR ILE VAL PHE LYS ASP GLU LYS PRO VAL LEU THR SEQRES 7 B 187 VAL GLY SER PRO GLY GLY THR THR ILE ILE ALA SER VAL SEQRES 8 B 187 PHE GLN THR ILE LEU ASN TYR PHE GLU TYR GLY MET SER SEQRES 9 B 187 LEU GLN ASP ALA ILE GLU GLU PRO ARG ILE TYR THR ASN SEQRES 10 B 187 SER LEU THR SER TYR ARG TYR GLU SER GLY MET PRO GLU SEQRES 11 B 187 ASP VAL ARG ARG LYS LEU ASN ASP PHE GLY HIS LYS PHE SEQRES 12 B 187 GLY SER ASN PRO VAL ASP ILE GLY ASN VAL GLN SER ILE SEQRES 13 B 187 PHE ILE ASP ARG GLU ASN LYS THR PHE MET GLY VAL ALA SEQRES 14 B 187 ASP SER SER ARG ASN GLY THR ALA VAL GLY VAL ASN ILE SEQRES 15 B 187 LYS THR SER ALA LYS HET MG A 401 1 HET MG B 601 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG 2(MG 2+) FORMUL 5 HOH *4(H2 O) HELIX 1 1 HIS A 49 LYS A 62 1 14 HELIX 2 2 ASN A 65 GLU A 81 1 17 HELIX 3 3 PRO A 130 SER A 135 1 6 HELIX 4 4 ARG A 136 VAL A 141 5 6 HELIX 5 5 GLY A 145 TRP A 157 1 13 HELIX 6 6 ILE A 166 GLY A 176 1 11 HELIX 7 7 ASP A 180 HIS A 190 1 11 HELIX 8 8 HIS A 190 LYS A 196 1 7 HELIX 9 9 ALA A 199 LEU A 204 1 6 HELIX 10 10 GLN A 218 GLY A 232 1 15 HELIX 11 11 SER A 233 ASP A 238 1 6 HELIX 12 12 GLY A 239 PHE A 252 1 14 HELIX 13 13 THR A 257 TYR A 264 1 8 HELIX 14 14 SER A 289 ASP A 303 1 15 HELIX 15 15 PHE A 304 TYR A 309 5 6 HELIX 16 16 SER A 313 ALA A 335 1 23 HELIX 17 17 PRO A 344 LEU A 349 1 6 HELIX 18 18 ASP A 350 LYS A 359 1 10 HELIX 19 19 ASP A 374 TYR A 378 5 5 HELIX 20 20 ASN B 437 PHE B 442 5 6 HELIX 21 21 GLY B 481 THR B 483 5 3 HELIX 22 22 THR B 484 GLU B 498 1 15 HELIX 23 23 SER B 502 GLU B 509 1 8 HELIX 24 24 PRO B 527 GLY B 538 1 12 SHEET 1 A 3 VAL A 37 GLY A 40 0 SHEET 2 A 3 THR B 562 ALA B 567 -1 O GLY B 565 N ALA A 38 SHEET 3 A 3 GLN B 552 ASP B 557 -1 N PHE B 555 O MET B 564 SHEET 1 B 7 THR A 267 ASP A 269 0 SHEET 2 B 7 THR A 103 ASN A 107 -1 N ILE A 105 O ASP A 269 SHEET 3 B 7 GLY A 90 TYR A 96 -1 N VAL A 95 O SER A 104 SHEET 4 B 7 VAL B 411 THR B 417 -1 O SER B 413 N MET A 94 SHEET 5 B 7 THR B 400 THR B 405 -1 N VAL B 404 O VAL B 412 SHEET 6 B 7 GLY A 43 THR A 47 -1 N ALA A 46 O THR B 403 SHEET 7 B 7 THR B 574 VAL B 578 -1 O VAL B 576 N VAL A 45 SHEET 1 C 2 PHE A 177 PRO A 178 0 SHEET 2 C 2 ILE A 215 LEU A 216 -1 O LEU A 216 N PHE A 177 SHEET 1 D 4 ILE A 272 TYR A 276 0 SHEET 2 D 4 TYR A 279 SER A 283 -1 O ILE A 281 N GLY A 274 SHEET 3 D 4 THR B 465 LYS B 469 -1 O PHE B 468 N ASP A 280 SHEET 4 D 4 LYS B 472 VAL B 477 -1 O LEU B 475 N VAL B 467 SHEET 1 E 2 ILE B 512 SER B 516 0 SHEET 2 E 2 SER B 519 TYR B 522 -1 O ARG B 521 N TYR B 513 LINK MG MG A 401 OE2 GLU B 498 1555 1555 1.93 LINK OE1 GLU B 523 MG MG B 601 1555 1555 2.46 CISPEP 1 GLY A 98 GLU A 99 0 -23.04 CISPEP 2 LYS A 161 MET A 162 0 -4.63 CISPEP 3 PRO A 286 PRO A 287 0 5.94 SITE 1 AC1 2 HIS A 277 GLU B 498 SITE 1 AC2 2 GLU B 523 ASP B 568 CRYST1 60.896 61.968 148.245 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016421 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016137 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006746 0.00000