HEADER HYDROLASE/PROTEIN BINDING 14-FEB-14 4OU3 TITLE CRYSTAL STRUCTURE OF PORCINE AMINOPEPTIDASE N COMPLEXED WITH CNGRCG TITLE 2 TUMOR-HOMING PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMINOPEPTIDASE N; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 63-963; COMPND 5 SYNONYM: AP-N, PAPN, ALANYL AMINOPEPTIDASE, AMINOPEPTIDASE M, AP-M, COMPND 6 MICROSOMAL AMINOPEPTIDASE, GP130; COMPND 7 EC: 3.4.11.2; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: TUMOR-HOMING PEPTIDE; COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIG; SOURCE 4 ORGANISM_TAXID: 9823; SOURCE 5 GENE: ANPEP; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PFASTBAC1; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES KEYWDS ZINC-AMINOPEPTIDASE, HYDROLASE-PROTEIN BINDING COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.LIU,Y.YANG,L.CHEN,Y.-L.LIN,F.LI REVDAT 5 20-SEP-23 4OU3 1 HETSYN REVDAT 4 29-JUL-20 4OU3 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 14-JAN-15 4OU3 1 JRNL REVDAT 2 19-NOV-14 4OU3 1 JRNL REVDAT 1 05-NOV-14 4OU3 0 JRNL AUTH C.LIU,Y.YANG,L.CHEN,Y.L.LIN,F.LI JRNL TITL A UNIFIED MECHANISM FOR AMINOPEPTIDASE N-BASED TUMOR CELL JRNL TITL 2 MOTILITY AND TUMOR-HOMING THERAPY. JRNL REF J.BIOL.CHEM. V. 289 34520 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 25359769 JRNL DOI 10.1074/JBC.M114.566802 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 88648 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.143 REMARK 3 R VALUE (WORKING SET) : 0.140 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4699 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 12634 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.1910 REMARK 3 BIN FREE R VALUE SET COUNT : 674 REMARK 3 BIN FREE R VALUE : 0.2570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7281 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 303 REMARK 3 SOLVENT ATOMS : 906 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.59000 REMARK 3 B22 (A**2) : 0.35000 REMARK 3 B33 (A**2) : 0.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.35000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.248 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.118 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.845 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7864 ; 0.012 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10747 ; 1.614 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 906 ; 6.328 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 368 ;40.055 ;24.946 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1223 ;14.424 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;16.523 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1232 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5927 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3630 ; 5.551 ; 4.528 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4534 ; 6.611 ; 6.782 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4233 ;10.842 ; 5.148 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 13470 ;10.931 ;40.786 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 7863 ; 3.225 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 335 ;22.470 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 8290 ;43.043 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 63 A 281 REMARK 3 RESIDUE RANGE : A 282 A 543 REMARK 3 RESIDUE RANGE : A 544 A 632 REMARK 3 RESIDUE RANGE : A 633 A 964 REMARK 3 ORIGIN FOR THE GROUP (A): 21.5644 18.4568 60.0179 REMARK 3 T TENSOR REMARK 3 T11: 0.0132 T22: 0.0074 REMARK 3 T33: 0.0073 T12: 0.0001 REMARK 3 T13: 0.0098 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.0004 L22: 0.0006 REMARK 3 L33: 0.0025 L12: 0.0003 REMARK 3 L13: 0.0006 L23: -0.0002 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: -0.0009 S13: 0.0001 REMARK 3 S21: 0.0004 S22: -0.0003 S23: 0.0003 REMARK 3 S31: 0.0000 S32: 0.0003 S33: 0.0004 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4OU3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000084949. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NOIR-1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 95642 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.920 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : 0.07900 REMARK 200 FOR THE DATA SET : 20.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.61500 REMARK 200 R SYM FOR SHELL (I) : 0.61500 REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: PDB ENTRY 4FKE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 UL PROTEIN + 2 UL WELL SOLUTION (18% REMARK 280 V/V PEG3350, 200 MM LITHIUM SULFATE, 100 MM HEPES, PH 7.2), REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 130.16150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.43950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 130.16150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.43950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 74580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -307.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H, I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -15.07417 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 80.62594 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 965 REMARK 465 HIS A 966 REMARK 465 HIS A 967 REMARK 465 HIS A 968 REMARK 465 HIS A 969 REMARK 465 HIS A 970 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 183 58.16 -94.26 REMARK 500 GLU A 195 78.86 -116.19 REMARK 500 GLU A 350 33.75 -80.84 REMARK 500 LEU A 354 76.61 -150.91 REMARK 500 TRP A 389 -60.64 -109.09 REMARK 500 THR A 487 145.81 87.90 REMARK 500 GLN A 505 -161.96 -129.44 REMARK 500 ASN A 620 68.74 62.40 REMARK 500 ASN A 622 17.79 58.46 REMARK 500 ASP A 779 71.74 -154.30 REMARK 500 LYS A 882 36.12 -77.96 REMARK 500 ASP A 887 47.18 -153.15 REMARK 500 PHE A 893 -58.37 74.30 REMARK 500 SER A 894 60.52 90.46 REMARK 500 SER A 907 18.43 -148.88 REMARK 500 LYS A 920 11.20 -69.23 REMARK 500 ASN A 921 43.85 -90.15 REMARK 500 VAL A 925 -44.76 96.40 REMARK 500 PHE A 927 26.67 -145.92 REMARK 500 ALA A 933 -9.93 -54.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 383 NE2 REMARK 620 2 HIS A 387 NE2 108.1 REMARK 620 3 GLU A 406 OE2 102.2 105.0 REMARK 620 4 HOH A1232 O 101.8 100.9 136.9 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4FKE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PORCINE AMINOPEPTIDASE N DBREF 4OU3 A 63 963 UNP P15145 AMPN_PIG 63 963 DBREF 4OU3 B 1 6 PDB 4OU3 4OU3 1 6 SEQADV 4OU3 PHE A 107 UNP P15145 LEU 107 CONFLICT SEQADV 4OU3 SER A 964 UNP P15145 EXPRESSION TAG SEQADV 4OU3 HIS A 965 UNP P15145 EXPRESSION TAG SEQADV 4OU3 HIS A 966 UNP P15145 EXPRESSION TAG SEQADV 4OU3 HIS A 967 UNP P15145 EXPRESSION TAG SEQADV 4OU3 HIS A 968 UNP P15145 EXPRESSION TAG SEQADV 4OU3 HIS A 969 UNP P15145 EXPRESSION TAG SEQADV 4OU3 HIS A 970 UNP P15145 EXPRESSION TAG SEQRES 1 A 908 GLN SER LYS PRO TRP ASN ARG TYR ARG LEU PRO THR THR SEQRES 2 A 908 LEU LEU PRO ASP SER TYR ASN VAL THR LEU ARG PRO TYR SEQRES 3 A 908 LEU THR PRO ASN ALA ASP GLY LEU TYR ILE PHE LYS GLY SEQRES 4 A 908 LYS SER ILE VAL ARG PHE LEU CYS GLN GLU PRO THR ASP SEQRES 5 A 908 VAL ILE ILE ILE HIS SER LYS LYS LEU ASN TYR THR THR SEQRES 6 A 908 GLN GLY HIS MET VAL VAL LEU ARG GLY VAL GLY ASP SER SEQRES 7 A 908 GLN VAL PRO GLU ILE ASP ARG THR GLU LEU VAL GLU LEU SEQRES 8 A 908 THR GLU TYR LEU VAL VAL HIS LEU LYS GLY SER LEU GLN SEQRES 9 A 908 PRO GLY HIS MET TYR GLU MET GLU SER GLU PHE GLN GLY SEQRES 10 A 908 GLU LEU ALA ASP ASP LEU ALA GLY PHE TYR ARG SER GLU SEQRES 11 A 908 TYR MET GLU GLY ASN VAL LYS LYS VAL LEU ALA THR THR SEQRES 12 A 908 GLN MET GLN SER THR ASP ALA ARG LYS SER PHE PRO CYS SEQRES 13 A 908 PHE ASP GLU PRO ALA MET LYS ALA THR PHE ASN ILE THR SEQRES 14 A 908 LEU ILE HIS PRO ASN ASN LEU THR ALA LEU SER ASN MET SEQRES 15 A 908 PRO PRO LYS GLY SER SER THR PRO LEU ALA GLU ASP PRO SEQRES 16 A 908 ASN TRP SER VAL THR GLU PHE GLU THR THR PRO VAL MET SEQRES 17 A 908 SER THR TYR LEU LEU ALA TYR ILE VAL SER GLU PHE GLN SEQRES 18 A 908 SER VAL ASN GLU THR ALA GLN ASN GLY VAL LEU ILE ARG SEQRES 19 A 908 ILE TRP ALA ARG PRO ASN ALA ILE ALA GLU GLY HIS GLY SEQRES 20 A 908 MET TYR ALA LEU ASN VAL THR GLY PRO ILE LEU ASN PHE SEQRES 21 A 908 PHE ALA ASN HIS TYR ASN THR SER TYR PRO LEU PRO LYS SEQRES 22 A 908 SER ASP GLN ILE ALA LEU PRO ASP PHE ASN ALA GLY ALA SEQRES 23 A 908 MET GLU ASN TRP GLY LEU VAL THR TYR ARG GLU ASN ALA SEQRES 24 A 908 LEU LEU PHE ASP PRO GLN SER SER SER ILE SER ASN LYS SEQRES 25 A 908 GLU ARG VAL VAL THR VAL ILE ALA HIS GLU LEU ALA HIS SEQRES 26 A 908 GLN TRP PHE GLY ASN LEU VAL THR LEU ALA TRP TRP ASN SEQRES 27 A 908 ASP LEU TRP LEU ASN GLU GLY PHE ALA SER TYR VAL GLU SEQRES 28 A 908 TYR LEU GLY ALA ASP HIS ALA GLU PRO THR TRP ASN LEU SEQRES 29 A 908 LYS ASP LEU ILE VAL PRO GLY ASP VAL TYR ARG VAL MET SEQRES 30 A 908 ALA VAL ASP ALA LEU ALA SER SER HIS PRO LEU THR THR SEQRES 31 A 908 PRO ALA GLU GLU VAL ASN THR PRO ALA GLN ILE SER GLU SEQRES 32 A 908 MET PHE ASP SER ILE SER TYR SER LYS GLY ALA SER VAL SEQRES 33 A 908 ILE ARG MET LEU SER ASN PHE LEU THR GLU ASP LEU PHE SEQRES 34 A 908 LYS GLU GLY LEU ALA SER TYR LEU HIS ALA PHE ALA TYR SEQRES 35 A 908 GLN ASN THR THR TYR LEU ASP LEU TRP GLU HIS LEU GLN SEQRES 36 A 908 LYS ALA VAL ASP ALA GLN THR SER ILE ARG LEU PRO ASP SEQRES 37 A 908 THR VAL ARG ALA ILE MET ASP ARG TRP THR LEU GLN MET SEQRES 38 A 908 GLY PHE PRO VAL ILE THR VAL ASP THR LYS THR GLY ASN SEQRES 39 A 908 ILE SER GLN LYS HIS PHE LEU LEU ASP SER GLU SER ASN SEQRES 40 A 908 VAL THR ARG SER SER ALA PHE ASP TYR LEU TRP ILE VAL SEQRES 41 A 908 PRO ILE SER SER ILE LYS ASN GLY VAL MET GLN ASP HIS SEQRES 42 A 908 TYR TRP LEU ARG ASP VAL SER GLN ALA GLN ASN ASP LEU SEQRES 43 A 908 PHE LYS THR ALA SER ASP ASP TRP VAL LEU LEU ASN VAL SEQRES 44 A 908 ASN VAL THR GLY TYR PHE GLN VAL ASN TYR ASP GLU ASP SEQRES 45 A 908 ASN TRP ARG MET ILE GLN HIS GLN LEU GLN THR ASN LEU SEQRES 46 A 908 SER VAL ILE PRO VAL ILE ASN ARG ALA GLN VAL ILE TYR SEQRES 47 A 908 ASP SER PHE ASN LEU ALA THR ALA HIS MET VAL PRO VAL SEQRES 48 A 908 THR LEU ALA LEU ASP ASN THR LEU PHE LEU ASN GLY GLU SEQRES 49 A 908 LYS GLU TYR MET PRO TRP GLN ALA ALA LEU SER SER LEU SEQRES 50 A 908 SER TYR PHE SER LEU MET PHE ASP ARG SER GLU VAL TYR SEQRES 51 A 908 GLY PRO MET LYS LYS TYR LEU ARG LYS GLN VAL GLU PRO SEQRES 52 A 908 LEU PHE GLN HIS PHE GLU THR LEU THR LYS ASN TRP THR SEQRES 53 A 908 GLU ARG PRO GLU ASN LEU MET ASP GLN TYR SER GLU ILE SEQRES 54 A 908 ASN ALA ILE SER THR ALA CYS SER ASN GLY LEU PRO GLN SEQRES 55 A 908 CYS GLU ASN LEU ALA LYS THR LEU PHE ASP GLN TRP MET SEQRES 56 A 908 SER ASP PRO GLU ASN ASN PRO ILE HIS PRO ASN LEU ARG SEQRES 57 A 908 SER THR ILE TYR CYS ASN ALA ILE ALA GLN GLY GLY GLN SEQRES 58 A 908 ASP GLN TRP ASP PHE ALA TRP GLY GLN LEU GLN GLN ALA SEQRES 59 A 908 GLN LEU VAL ASN GLU ALA ASP LYS LEU ARG SER ALA LEU SEQRES 60 A 908 ALA CYS SER ASN GLU VAL TRP LEU LEU ASN ARG TYR LEU SEQRES 61 A 908 GLY TYR THR LEU ASN PRO ASP LEU ILE ARG LYS GLN ASP SEQRES 62 A 908 ALA THR SER THR ILE ASN SER ILE ALA SER ASN VAL ILE SEQRES 63 A 908 GLY GLN PRO LEU ALA TRP ASP PHE VAL GLN SER ASN TRP SEQRES 64 A 908 LYS LYS LEU PHE GLN ASP TYR GLY GLY GLY SER PHE SER SEQRES 65 A 908 PHE SER ASN LEU ILE GLN GLY VAL THR ARG ARG PHE SER SEQRES 66 A 908 SER GLU PHE GLU LEU GLN GLN LEU GLU GLN PHE LYS LYS SEQRES 67 A 908 ASN ASN MET ASP VAL GLY PHE GLY SER GLY THR ARG ALA SEQRES 68 A 908 LEU GLU GLN ALA LEU GLU LYS THR LYS ALA ASN ILE LYS SEQRES 69 A 908 TRP VAL LYS GLU ASN LYS GLU VAL VAL LEU ASN TRP PHE SEQRES 70 A 908 ILE GLU HIS SER SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 6 CYS ASN GLY ARG CYS GLY MODRES 4OU3 ASN A 506 ASN GLYCOSYLATION SITE MODRES 4OU3 ASN A 124 ASN GLYCOSYLATION SITE MODRES 4OU3 ASN A 237 ASN GLYCOSYLATION SITE MODRES 4OU3 ASN A 556 ASN GLYCOSYLATION SITE MODRES 4OU3 ASN A 314 ASN GLYCOSYLATION SITE MODRES 4OU3 ASN A 229 ASN GLYCOSYLATION SITE MODRES 4OU3 ASN A 82 ASN GLYCOSYLATION SITE MODRES 4OU3 ASN A 646 ASN GLYCOSYLATION SITE MODRES 4OU3 ASN A 328 ASN GLYCOSYLATION SITE MODRES 4OU3 ASN A 622 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET NAG D 1 14 HET NAG D 2 14 HET NAG E 1 14 HET NAG E 2 14 HET NAG F 1 14 HET NAG F 2 14 HET NAG G 1 14 HET NAG G 2 14 HET NAG H 1 14 HET NAG H 2 14 HET NAG I 1 14 HET NAG I 2 14 HET NAG J 1 14 HET NAG J 2 14 HET ZN A1001 1 HET NAG A1016 14 HET NAG A1019 14 HET SO4 A1020 5 HET SO4 A1021 5 HET SO4 A1022 5 HET SO4 A1023 5 HET SO4 A1024 5 HET SO4 A1025 5 HET SO4 A1026 5 HET SO4 A1027 5 HET SO4 A1028 5 HET SO4 A1029 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 18(C8 H15 N O6) FORMUL 11 ZN ZN 2+ FORMUL 14 SO4 10(O4 S 2-) FORMUL 24 HOH *906(H2 O) HELIX 1 1 LYS A 65 ARG A 69 5 5 HELIX 2 2 ASP A 211 SER A 215 5 5 HELIX 3 3 SER A 271 LEU A 275 5 5 HELIX 4 4 ARG A 300 GLU A 306 1 7 HELIX 5 5 GLY A 309 TYR A 327 1 19 HELIX 6 6 GLU A 359 LEU A 363 1 5 HELIX 7 7 SER A 370 HIS A 387 1 18 HELIX 8 8 TRP A 398 ASN A 400 5 3 HELIX 9 9 ASP A 401 GLU A 421 1 21 HELIX 10 10 ASN A 425 ASP A 428 5 4 HELIX 11 11 LEU A 429 ASP A 434 1 6 HELIX 12 12 ASP A 434 ALA A 443 1 10 HELIX 13 13 PRO A 453 VAL A 457 5 5 HELIX 14 14 THR A 459 GLU A 465 1 7 HELIX 15 15 ASP A 468 THR A 487 1 20 HELIX 16 16 THR A 487 ALA A 503 1 17 HELIX 17 17 THR A 508 ALA A 522 1 15 HELIX 18 18 THR A 531 LEU A 541 1 11 HELIX 19 19 ASP A 607 LYS A 610 5 4 HELIX 20 20 VAL A 621 THR A 624 5 4 HELIX 21 21 ASP A 632 ASN A 646 1 15 HELIX 22 22 LEU A 647 ILE A 650 5 4 HELIX 23 23 PRO A 651 ALA A 668 1 18 HELIX 24 24 PRO A 672 ASN A 679 1 8 HELIX 25 25 THR A 680 GLU A 686 5 7 HELIX 26 26 GLU A 688 ASP A 707 1 20 HELIX 27 27 VAL A 711 THR A 734 1 24 HELIX 28 28 ASN A 743 ASN A 760 1 18 HELIX 29 29 LEU A 762 SER A 778 1 17 HELIX 30 30 LEU A 789 GLY A 801 1 13 HELIX 31 31 GLY A 802 ALA A 816 1 15 HELIX 32 32 LEU A 818 ALA A 830 1 13 HELIX 33 33 GLU A 834 THR A 845 1 12 HELIX 34 34 ARG A 852 GLN A 854 5 3 HELIX 35 35 ASP A 855 ASN A 866 1 12 HELIX 36 36 ILE A 868 TRP A 881 1 14 HELIX 37 37 LYS A 882 LEU A 884 5 3 HELIX 38 38 SER A 894 ARG A 904 1 11 HELIX 39 39 SER A 908 LYS A 920 1 13 HELIX 40 40 PHE A 927 THR A 931 5 5 HELIX 41 41 LEU A 934 SER A 963 1 30 SHEET 1 A 3 ASN A 124 TYR A 125 0 SHEET 2 A 3 MET A 170 GLU A 180 -1 O GLN A 178 N ASN A 124 SHEET 3 A 3 VAL A 133 GLY A 136 -1 N ARG A 135 O GLU A 172 SHEET 1 B 7 ASN A 124 TYR A 125 0 SHEET 2 B 7 MET A 170 GLU A 180 -1 O GLN A 178 N ASN A 124 SHEET 3 B 7 ILE A 98 CYS A 109 -1 N PHE A 107 O TYR A 171 SHEET 4 B 7 LEU A 76 PRO A 87 -1 N ASP A 79 O ARG A 106 SHEET 5 B 7 THR A 227 PRO A 235 1 O ASN A 229 N TYR A 81 SHEET 6 B 7 TRP A 259 GLU A 263 -1 O SER A 260 N HIS A 234 SHEET 7 B 7 THR A 251 PRO A 252 -1 N THR A 251 O VAL A 261 SHEET 1 C 3 THR A 113 HIS A 119 0 SHEET 2 C 3 TYR A 156 LEU A 165 -1 O LEU A 165 N THR A 113 SHEET 3 C 3 ILE A 145 VAL A 151 -1 N ASP A 146 O HIS A 160 SHEET 1 D 2 GLY A 187 GLU A 195 0 SHEET 2 D 2 VAL A 198 GLN A 206 -1 O LYS A 200 N TYR A 193 SHEET 1 E 2 THR A 239 SER A 242 0 SHEET 2 E 2 TYR A 277 SER A 280 -1 O SER A 280 N THR A 239 SHEET 1 F 5 GLN A 283 THR A 288 0 SHEET 2 F 5 LEU A 294 ALA A 299 -1 O ILE A 295 N GLU A 287 SHEET 3 F 5 LYS A 335 LEU A 341 1 O GLN A 338 N TRP A 298 SHEET 4 F 5 LEU A 354 ARG A 358 1 O TYR A 357 N LEU A 341 SHEET 5 F 5 ALA A 348 MET A 349 -1 N MET A 349 O THR A 356 SHEET 1 G 2 VAL A 394 LEU A 396 0 SHEET 2 G 2 GLN A 505 THR A 507 1 O THR A 507 N THR A 395 SHEET 1 H 4 GLN A 603 GLN A 605 0 SHEET 2 H 4 ASN A 556 HIS A 561 -1 N ILE A 557 O ALA A 604 SHEET 3 H 4 PRO A 546 VAL A 550 -1 N VAL A 547 O LYS A 560 SHEET 4 H 4 GLN A 628 TYR A 631 1 O GLN A 628 N ILE A 548 SHEET 1 I 2 VAL A 582 ILE A 584 0 SHEET 2 I 2 TYR A 596 LEU A 598 -1 O TYR A 596 N ILE A 584 SHEET 1 J 3 VAL A 591 MET A 592 0 SHEET 2 J 3 SER A 586 LYS A 588 -1 N LYS A 588 O VAL A 591 SHEET 3 J 3 VAL A 617 LEU A 619 -1 O LEU A 618 N ILE A 587 SSBOND 1 CYS A 758 CYS A 765 1555 1555 2.07 SSBOND 2 CYS A 795 CYS A 831 1555 1555 2.06 SSBOND 3 CYS B 1 CYS B 5 1555 1555 1.96 LINK ND2 ASN A 82 C1 NAG C 1 1555 1555 1.46 LINK ND2 ASN A 124 C1 NAG D 1 1555 1555 1.43 LINK ND2 ASN A 229 C1 NAG E 1 1555 1555 1.46 LINK ND2 ASN A 237 C1 NAG F 1 1555 1555 1.43 LINK ND2 ASN A 314 C1 NAG G 1 1555 1555 1.44 LINK ND2 ASN A 328 C1 NAG H 1 1555 1555 1.47 LINK ND2 ASN A 506 C1 NAG I 1 1555 1555 1.41 LINK ND2 ASN A 556 C1 NAG A1016 1555 1555 1.44 LINK ND2 ASN A 622 C1 NAG J 1 1555 1555 1.52 LINK ND2 ASN A 646 C1 NAG A1019 1555 1555 1.47 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.43 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.43 LINK O4 NAG G 1 C1 NAG G 2 1555 1555 1.44 LINK O4 NAG H 1 C1 NAG H 2 1555 1555 1.42 LINK O4 NAG I 1 C1 NAG I 2 1555 1555 1.47 LINK O4 NAG J 1 C1 NAG J 2 1555 1555 1.44 LINK NE2 HIS A 383 ZN ZN A1001 1555 1555 2.12 LINK NE2 HIS A 387 ZN ZN A1001 1555 1555 2.05 LINK OE2 GLU A 406 ZN ZN A1001 1555 1555 2.05 LINK ZN ZN A1001 O HOH A1232 1555 1555 2.22 CISPEP 1 GLN A 208 SER A 209 0 -3.85 CRYST1 260.323 62.879 82.023 90.00 100.59 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.003841 0.000000 0.000718 0.00000 SCALE2 0.000000 0.015904 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012403 0.00000