data_4OUQ # _entry.id 4OUQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4OUQ pdb_00004ouq 10.2210/pdb4ouq/pdb RCSB RCSB084972 ? ? WWPDB D_1000084972 ? ? # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id JCSG-418300 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 4OUQ _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2014-02-18 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of a hypothetical protein (BF1468) from Bacteroides fragilis YCH46 at 1.55 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 4OUQ _cell.length_a 40.467 _cell.length_b 48.316 _cell.length_c 49.322 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4OUQ _symmetry.Int_Tables_number 19 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Uncharacterized protein' 12355.815 1 ? ? ? ? 2 water nat water 18.015 104 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GQDIPVGVVVAFKKGNSQELNRYLGEKVNLVIQNRSESVDRQAAEGTLAAFFSSNKVSGFNVNHEGKRDESSFIIGTLTT ANGNFRINCFFRRVQNKYLINQIRIDKTNE ; _entity_poly.pdbx_seq_one_letter_code_can ;GQDIPVGVVVAFKKGNSQELNRYLGEKVNLVIQNRSESVDRQAAEGTLAAFFSSNKVSGFNVNHEGKRDESSFIIGTLTT ANGNFRINCFFRRVQNKYLINQIRIDKTNE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier JCSG-418300 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLN n 1 3 ASP n 1 4 ILE n 1 5 PRO n 1 6 VAL n 1 7 GLY n 1 8 VAL n 1 9 VAL n 1 10 VAL n 1 11 ALA n 1 12 PHE n 1 13 LYS n 1 14 LYS n 1 15 GLY n 1 16 ASN n 1 17 SER n 1 18 GLN n 1 19 GLU n 1 20 LEU n 1 21 ASN n 1 22 ARG n 1 23 TYR n 1 24 LEU n 1 25 GLY n 1 26 GLU n 1 27 LYS n 1 28 VAL n 1 29 ASN n 1 30 LEU n 1 31 VAL n 1 32 ILE n 1 33 GLN n 1 34 ASN n 1 35 ARG n 1 36 SER n 1 37 GLU n 1 38 SER n 1 39 VAL n 1 40 ASP n 1 41 ARG n 1 42 GLN n 1 43 ALA n 1 44 ALA n 1 45 GLU n 1 46 GLY n 1 47 THR n 1 48 LEU n 1 49 ALA n 1 50 ALA n 1 51 PHE n 1 52 PHE n 1 53 SER n 1 54 SER n 1 55 ASN n 1 56 LYS n 1 57 VAL n 1 58 SER n 1 59 GLY n 1 60 PHE n 1 61 ASN n 1 62 VAL n 1 63 ASN n 1 64 HIS n 1 65 GLU n 1 66 GLY n 1 67 LYS n 1 68 ARG n 1 69 ASP n 1 70 GLU n 1 71 SER n 1 72 SER n 1 73 PHE n 1 74 ILE n 1 75 ILE n 1 76 GLY n 1 77 THR n 1 78 LEU n 1 79 THR n 1 80 THR n 1 81 ALA n 1 82 ASN n 1 83 GLY n 1 84 ASN n 1 85 PHE n 1 86 ARG n 1 87 ILE n 1 88 ASN n 1 89 CYS n 1 90 PHE n 1 91 PHE n 1 92 ARG n 1 93 ARG n 1 94 VAL n 1 95 GLN n 1 96 ASN n 1 97 LYS n 1 98 TYR n 1 99 LEU n 1 100 ILE n 1 101 ASN n 1 102 GLN n 1 103 ILE n 1 104 ARG n 1 105 ILE n 1 106 ASP n 1 107 LYS n 1 108 THR n 1 109 ASN n 1 110 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene BF1468 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain YCH46 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacteroides fragilis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 295405 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain PB1 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q64WA7_BACFR _struct_ref.pdbx_db_accession Q64WA7 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QDIPVGVVVAFKKGNSQELNRYLGEKVNLVIQNRSESVDRQAAEGTLAAFFSSNKVSGFNVNHEGKRDESSFIIGTLTTA NGNFRINCFFRRVQNKYLINQIRIDKTNE ; _struct_ref.pdbx_align_begin 22 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4OUQ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 110 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q64WA7 _struct_ref_seq.db_align_beg 22 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 130 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 22 _struct_ref_seq.pdbx_auth_seq_align_end 130 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4OUQ _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q64WA7 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 4OUQ # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.95 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 36.96 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 9.0 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '30.0% polyethylene glycol 6000, 0.1M Bicine pH 9.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.details 'Rhodium-coated vertical and horizontal focusing mirrors; liquid-nitrogen cooled double crystal Si(111) monochromator' _diffrn_detector.pdbx_collection_date 2012-03-11 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL12-2 _diffrn_source.type 'SSRL BEAMLINE BL12-2' _diffrn_source.pdbx_wavelength 1.0 _diffrn_source.pdbx_wavelength_list ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 4OUQ _reflns.d_resolution_high 1.55 _reflns.d_resolution_low 21.965 _reflns.number_all 13967 _reflns.number_obs 13967 _reflns.pdbx_netI_over_sigmaI 9.200 _reflns.pdbx_Rsym_value 0.064 _reflns.pdbx_redundancy 3.200 _reflns.percent_possible_obs 96.400 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.pdbx_Rmerge_I_obs ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.550 1.590 ? 3142 ? 0.645 1.6 0.645 ? 3.000 ? 1032 97.700 1 1 1.590 1.630 ? 2782 ? 0.545 1.9 0.545 ? 2.900 ? 972 94.100 2 1 1.630 1.680 ? 3265 ? 0.473 2.4 0.473 ? 3.400 ? 973 98.100 3 1 1.680 1.730 ? 3153 ? 0.371 2.9 0.371 ? 3.300 ? 945 98.500 4 1 1.730 1.790 ? 2978 ? 0.300 3.5 0.300 ? 3.200 ? 929 97.900 5 1 1.790 1.850 ? 2738 ? 0.243 4.3 0.243 ? 3.100 ? 884 96.600 6 1 1.850 1.920 ? 2427 ? 0.180 5.3 0.180 ? 2.900 ? 833 93.700 7 1 1.920 2.000 ? 2660 ? 0.134 7.3 0.134 ? 3.300 ? 810 96.400 8 1 2.000 2.090 ? 2729 ? 0.107 9.3 0.107 ? 3.300 ? 816 98.300 9 1 2.090 2.190 ? 2450 ? 0.094 10.5 0.094 ? 3.200 ? 757 97.400 10 1 2.190 2.310 ? 2328 ? 0.080 11.8 0.080 ? 3.200 ? 725 97.800 11 1 2.310 2.450 ? 1976 ? 0.075 12.3 0.075 ? 3.000 ? 654 92.400 12 1 2.450 2.620 ? 2190 ? 0.066 14.0 0.066 ? 3.300 ? 655 97.800 13 1 2.620 2.830 ? 2126 ? 0.054 16.5 0.054 ? 3.400 ? 618 98.200 14 1 2.830 3.100 ? 1875 ? 0.044 18.3 0.044 ? 3.300 ? 566 97.600 15 1 3.100 3.470 ? 1507 ? 0.043 21.0 0.043 ? 3.000 ? 496 93.000 16 1 3.470 4.000 ? 1457 ? 0.040 23.1 0.040 ? 3.300 ? 448 94.600 17 1 4.000 4.900 ? 1290 ? 0.039 25.5 0.039 ? 3.400 ? 381 93.800 18 1 4.900 6.930 ? 889 ? 0.031 21.1 0.031 ? 3.100 ? 290 90.000 19 1 6.930 21.965 ? 596 ? 0.029 23.2 0.029 ? 3.300 ? 183 93.300 20 1 # _refine.entry_id 4OUQ _refine.ls_d_res_high 1.5500 _refine.ls_d_res_low 21.965 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 95.5800 _refine.ls_number_reflns_obs 13930 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1.HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2.ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. 3.ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 4.WATERS WERE EXCLUDED FROM AUTOMATIC TLS ASSIGNMENT. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2009 _refine.ls_R_factor_R_work 0.1990 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2391 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.0000 _refine.ls_number_reflns_R_free 691 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 26.1654 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.5400 _refine.aniso_B[2][2] 0.9100 _refine.aniso_B[3][3] -0.3700 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] -0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9490 _refine.correlation_coeff_Fo_to_Fc_free 0.9380 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.1030 _refine.pdbx_overall_ESU_R_Free 0.1040 _refine.overall_SU_ML 0.0800 _refine.overall_SU_B 4.4830 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 90.680 _refine.B_iso_min 10.360 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 812 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 104 _refine_hist.number_atoms_total 916 _refine_hist.d_res_high 1.5500 _refine_hist.d_res_low 21.965 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 887 0.019 0.019 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 862 0.002 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1208 1.359 1.925 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 1966 0.758 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 120 5.250 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 48 37.489 23.958 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 158 13.108 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 9 19.837 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 136 0.110 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1069 0.011 0.020 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 238 0.002 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 439 2.879 2.570 ? ? 'X-RAY DIFFRACTION' r_mcbond_other 440 2.875 2.576 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 551 3.505 4.773 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.5500 _refine_ls_shell.d_res_low 1.5900 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 97.2400 _refine_ls_shell.number_reflns_R_work 962 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2820 _refine_ls_shell.R_factor_R_free 0.2420 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 61 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1023 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.title 'Crystal structure of a DUF4783 family protein (BF1468) from Bacteroides fragilis YCH46 at 1.55 A resolution' _struct.entry_id 4OUQ _struct.pdbx_model_type_details ? _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.text ;DUF4783, PF16022 family, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, UNKNOWN FUNCTION ; _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.entry_id 4OUQ # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 5 ? GLY A 15 ? PRO A 25 GLY A 35 1 ? 11 HELX_P HELX_P2 2 ASN A 16 ? ARG A 22 ? ASN A 36 ARG A 42 1 ? 7 HELX_P HELX_P3 3 ARG A 41 ? ASN A 55 ? ARG A 61 ASN A 75 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 35 ? ASP A 40 ? ARG A 55 ASP A 60 A 2 LEU A 24 ? ILE A 32 ? LEU A 44 ILE A 52 A 3 LYS A 97 ? LYS A 107 ? LYS A 117 LYS A 127 A 4 GLY A 83 ? VAL A 94 ? GLY A 103 VAL A 114 A 5 SER A 72 ? THR A 80 ? SER A 92 THR A 100 A 6 VAL A 57 ? LYS A 67 ? VAL A 77 LYS A 87 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLU A 37 ? O GLU A 57 N LEU A 30 ? N LEU A 50 A 2 3 N GLY A 25 ? N GLY A 45 O ILE A 100 ? O ILE A 120 A 3 4 O ARG A 104 ? O ARG A 124 N ASN A 88 ? N ASN A 108 A 4 5 O PHE A 85 ? O PHE A 105 N LEU A 78 ? N LEU A 98 A 5 6 O ILE A 75 ? O ILE A 95 N HIS A 64 ? N HIS A 84 # _atom_sites.entry_id 4OUQ _atom_sites.fract_transf_matrix[1][1] 0.024711 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020697 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020275 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 GLN 2 22 ? ? ? A . n A 1 3 ASP 3 23 23 ASP ASP A . n A 1 4 ILE 4 24 24 ILE ILE A . n A 1 5 PRO 5 25 25 PRO PRO A . n A 1 6 VAL 6 26 26 VAL VAL A . n A 1 7 GLY 7 27 27 GLY GLY A . n A 1 8 VAL 8 28 28 VAL VAL A . n A 1 9 VAL 9 29 29 VAL VAL A . n A 1 10 VAL 10 30 30 VAL VAL A . n A 1 11 ALA 11 31 31 ALA ALA A . n A 1 12 PHE 12 32 32 PHE PHE A . n A 1 13 LYS 13 33 33 LYS LYS A . n A 1 14 LYS 14 34 34 LYS LYS A . n A 1 15 GLY 15 35 35 GLY GLY A . n A 1 16 ASN 16 36 36 ASN ASN A . n A 1 17 SER 17 37 37 SER SER A . n A 1 18 GLN 18 38 38 GLN GLN A . n A 1 19 GLU 19 39 39 GLU GLU A . n A 1 20 LEU 20 40 40 LEU LEU A . n A 1 21 ASN 21 41 41 ASN ASN A . n A 1 22 ARG 22 42 42 ARG ARG A . n A 1 23 TYR 23 43 43 TYR TYR A . n A 1 24 LEU 24 44 44 LEU LEU A . n A 1 25 GLY 25 45 45 GLY GLY A . n A 1 26 GLU 26 46 46 GLU GLU A . n A 1 27 LYS 27 47 47 LYS LYS A . n A 1 28 VAL 28 48 48 VAL VAL A . n A 1 29 ASN 29 49 49 ASN ASN A . n A 1 30 LEU 30 50 50 LEU LEU A . n A 1 31 VAL 31 51 51 VAL VAL A . n A 1 32 ILE 32 52 52 ILE ILE A . n A 1 33 GLN 33 53 53 GLN GLN A . n A 1 34 ASN 34 54 54 ASN ASN A . n A 1 35 ARG 35 55 55 ARG ARG A . n A 1 36 SER 36 56 56 SER SER A . n A 1 37 GLU 37 57 57 GLU GLU A . n A 1 38 SER 38 58 58 SER SER A . n A 1 39 VAL 39 59 59 VAL VAL A . n A 1 40 ASP 40 60 60 ASP ASP A . n A 1 41 ARG 41 61 61 ARG ARG A . n A 1 42 GLN 42 62 62 GLN GLN A . n A 1 43 ALA 43 63 63 ALA ALA A . n A 1 44 ALA 44 64 64 ALA ALA A . n A 1 45 GLU 45 65 65 GLU GLU A . n A 1 46 GLY 46 66 66 GLY GLY A . n A 1 47 THR 47 67 67 THR THR A . n A 1 48 LEU 48 68 68 LEU LEU A . n A 1 49 ALA 49 69 69 ALA ALA A . n A 1 50 ALA 50 70 70 ALA ALA A . n A 1 51 PHE 51 71 71 PHE PHE A . n A 1 52 PHE 52 72 72 PHE PHE A . n A 1 53 SER 53 73 73 SER SER A . n A 1 54 SER 54 74 74 SER SER A . n A 1 55 ASN 55 75 75 ASN ASN A . n A 1 56 LYS 56 76 76 LYS LYS A . n A 1 57 VAL 57 77 77 VAL VAL A . n A 1 58 SER 58 78 78 SER SER A . n A 1 59 GLY 59 79 79 GLY GLY A . n A 1 60 PHE 60 80 80 PHE PHE A . n A 1 61 ASN 61 81 81 ASN ASN A . n A 1 62 VAL 62 82 82 VAL VAL A . n A 1 63 ASN 63 83 83 ASN ASN A . n A 1 64 HIS 64 84 84 HIS HIS A . n A 1 65 GLU 65 85 85 GLU GLU A . n A 1 66 GLY 66 86 86 GLY GLY A . n A 1 67 LYS 67 87 87 LYS LYS A . n A 1 68 ARG 68 88 88 ARG ARG A . n A 1 69 ASP 69 89 89 ASP ASP A . n A 1 70 GLU 70 90 ? ? ? A . n A 1 71 SER 71 91 91 SER SER A . n A 1 72 SER 72 92 92 SER SER A . n A 1 73 PHE 73 93 93 PHE PHE A . n A 1 74 ILE 74 94 94 ILE ILE A . n A 1 75 ILE 75 95 95 ILE ILE A . n A 1 76 GLY 76 96 96 GLY GLY A . n A 1 77 THR 77 97 97 THR THR A . n A 1 78 LEU 78 98 98 LEU LEU A . n A 1 79 THR 79 99 99 THR THR A . n A 1 80 THR 80 100 100 THR THR A . n A 1 81 ALA 81 101 101 ALA ALA A . n A 1 82 ASN 82 102 102 ASN ASN A . n A 1 83 GLY 83 103 103 GLY GLY A . n A 1 84 ASN 84 104 104 ASN ASN A . n A 1 85 PHE 85 105 105 PHE PHE A . n A 1 86 ARG 86 106 106 ARG ARG A . n A 1 87 ILE 87 107 107 ILE ILE A . n A 1 88 ASN 88 108 108 ASN ASN A . n A 1 89 CYS 89 109 109 CYS CYS A . n A 1 90 PHE 90 110 110 PHE PHE A . n A 1 91 PHE 91 111 111 PHE PHE A . n A 1 92 ARG 92 112 112 ARG ARG A . n A 1 93 ARG 93 113 113 ARG ARG A . n A 1 94 VAL 94 114 114 VAL VAL A . n A 1 95 GLN 95 115 115 GLN GLN A . n A 1 96 ASN 96 116 116 ASN ASN A . n A 1 97 LYS 97 117 117 LYS LYS A . n A 1 98 TYR 98 118 118 TYR TYR A . n A 1 99 LEU 99 119 119 LEU LEU A . n A 1 100 ILE 100 120 120 ILE ILE A . n A 1 101 ASN 101 121 121 ASN ASN A . n A 1 102 GLN 102 122 122 GLN GLN A . n A 1 103 ILE 103 123 123 ILE ILE A . n A 1 104 ARG 104 124 124 ARG ARG A . n A 1 105 ILE 105 125 125 ILE ILE A . n A 1 106 ASP 106 126 126 ASP ASP A . n A 1 107 LYS 107 127 127 LYS LYS A . n A 1 108 THR 108 128 128 THR THR A . n A 1 109 ASN 109 129 129 ASN ASN A . n A 1 110 GLU 110 130 ? ? ? A . n # _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 201 131 HOH HOH A . B 2 HOH 2 202 132 HOH HOH A . B 2 HOH 3 203 133 HOH HOH A . B 2 HOH 4 204 134 HOH HOH A . B 2 HOH 5 205 135 HOH HOH A . B 2 HOH 6 206 136 HOH HOH A . B 2 HOH 7 207 137 HOH HOH A . B 2 HOH 8 208 138 HOH HOH A . B 2 HOH 9 209 139 HOH HOH A . B 2 HOH 10 210 140 HOH HOH A . B 2 HOH 11 211 141 HOH HOH A . B 2 HOH 12 212 142 HOH HOH A . B 2 HOH 13 213 143 HOH HOH A . B 2 HOH 14 214 144 HOH HOH A . B 2 HOH 15 215 145 HOH HOH A . B 2 HOH 16 216 146 HOH HOH A . B 2 HOH 17 217 147 HOH HOH A . B 2 HOH 18 218 148 HOH HOH A . B 2 HOH 19 219 149 HOH HOH A . B 2 HOH 20 220 150 HOH HOH A . B 2 HOH 21 221 151 HOH HOH A . B 2 HOH 22 222 152 HOH HOH A . B 2 HOH 23 223 153 HOH HOH A . B 2 HOH 24 224 154 HOH HOH A . B 2 HOH 25 225 155 HOH HOH A . B 2 HOH 26 226 156 HOH HOH A . B 2 HOH 27 227 157 HOH HOH A . B 2 HOH 28 228 158 HOH HOH A . B 2 HOH 29 229 159 HOH HOH A . B 2 HOH 30 230 160 HOH HOH A . B 2 HOH 31 231 161 HOH HOH A . B 2 HOH 32 232 162 HOH HOH A . B 2 HOH 33 233 163 HOH HOH A . B 2 HOH 34 234 164 HOH HOH A . B 2 HOH 35 235 165 HOH HOH A . B 2 HOH 36 236 166 HOH HOH A . B 2 HOH 37 237 167 HOH HOH A . B 2 HOH 38 238 168 HOH HOH A . B 2 HOH 39 239 169 HOH HOH A . B 2 HOH 40 240 170 HOH HOH A . B 2 HOH 41 241 171 HOH HOH A . B 2 HOH 42 242 172 HOH HOH A . B 2 HOH 43 243 173 HOH HOH A . B 2 HOH 44 244 174 HOH HOH A . B 2 HOH 45 245 175 HOH HOH A . B 2 HOH 46 246 176 HOH HOH A . B 2 HOH 47 247 177 HOH HOH A . B 2 HOH 48 248 178 HOH HOH A . B 2 HOH 49 249 179 HOH HOH A . B 2 HOH 50 250 180 HOH HOH A . B 2 HOH 51 251 181 HOH HOH A . B 2 HOH 52 252 182 HOH HOH A . B 2 HOH 53 253 183 HOH HOH A . B 2 HOH 54 254 184 HOH HOH A . B 2 HOH 55 255 185 HOH HOH A . B 2 HOH 56 256 186 HOH HOH A . B 2 HOH 57 257 187 HOH HOH A . B 2 HOH 58 258 188 HOH HOH A . B 2 HOH 59 259 189 HOH HOH A . B 2 HOH 60 260 190 HOH HOH A . B 2 HOH 61 261 191 HOH HOH A . B 2 HOH 62 262 192 HOH HOH A . B 2 HOH 63 263 193 HOH HOH A . B 2 HOH 64 264 194 HOH HOH A . B 2 HOH 65 265 195 HOH HOH A . B 2 HOH 66 266 196 HOH HOH A . B 2 HOH 67 267 197 HOH HOH A . B 2 HOH 68 268 198 HOH HOH A . B 2 HOH 69 269 199 HOH HOH A . B 2 HOH 70 270 200 HOH HOH A . B 2 HOH 71 271 201 HOH HOH A . B 2 HOH 72 272 202 HOH HOH A . B 2 HOH 73 273 203 HOH HOH A . B 2 HOH 74 274 204 HOH HOH A . B 2 HOH 75 275 205 HOH HOH A . B 2 HOH 76 276 206 HOH HOH A . B 2 HOH 77 277 207 HOH HOH A . B 2 HOH 78 278 208 HOH HOH A . B 2 HOH 79 279 209 HOH HOH A . B 2 HOH 80 280 210 HOH HOH A . B 2 HOH 81 281 211 HOH HOH A . B 2 HOH 82 282 212 HOH HOH A . B 2 HOH 83 283 213 HOH HOH A . B 2 HOH 84 284 214 HOH HOH A . B 2 HOH 85 285 215 HOH HOH A . B 2 HOH 86 286 216 HOH HOH A . B 2 HOH 87 287 217 HOH HOH A . B 2 HOH 88 288 218 HOH HOH A . B 2 HOH 89 289 219 HOH HOH A . B 2 HOH 90 290 220 HOH HOH A . B 2 HOH 91 291 221 HOH HOH A . B 2 HOH 92 292 222 HOH HOH A . B 2 HOH 93 293 223 HOH HOH A . B 2 HOH 94 294 224 HOH HOH A . B 2 HOH 95 295 225 HOH HOH A . B 2 HOH 96 296 226 HOH HOH A . B 2 HOH 97 297 227 HOH HOH A . B 2 HOH 98 298 228 HOH HOH A . B 2 HOH 99 299 229 HOH HOH A . B 2 HOH 100 300 230 HOH HOH A . B 2 HOH 101 301 231 HOH HOH A . B 2 HOH 102 302 232 HOH HOH A . B 2 HOH 103 303 233 HOH HOH A . B 2 HOH 104 304 234 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-04-30 2 'Structure model' 1 1 2014-12-24 3 'Structure model' 1 2 2017-11-22 4 'Structure model' 1 3 2018-01-24 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Structure summary' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Database references' 4 5 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' citation_author 3 5 'Structure model' database_2 4 5 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_citation_author.name' 4 5 'Structure model' '_database_2.pdbx_DOI' 5 5 'Structure model' '_database_2.pdbx_database_accession' 6 5 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 14.5890 _pdbx_refine_tls.origin_y -1.2027 _pdbx_refine_tls.origin_z -4.6042 _pdbx_refine_tls.T[1][1] 0.0045 _pdbx_refine_tls.T[2][2] 0.0295 _pdbx_refine_tls.T[3][3] 0.0319 _pdbx_refine_tls.T[1][2] -0.0091 _pdbx_refine_tls.T[1][3] 0.0035 _pdbx_refine_tls.T[2][3] 0.0048 _pdbx_refine_tls.L[1][1] 3.3882 _pdbx_refine_tls.L[2][2] 2.0100 _pdbx_refine_tls.L[3][3] 4.2668 _pdbx_refine_tls.L[1][2] 0.8542 _pdbx_refine_tls.L[1][3] -0.8220 _pdbx_refine_tls.L[2][3] 0.3411 _pdbx_refine_tls.S[1][1] -0.0320 _pdbx_refine_tls.S[2][2] 0.0358 _pdbx_refine_tls.S[3][3] -0.0038 _pdbx_refine_tls.S[1][2] 0.0192 _pdbx_refine_tls.S[1][3] 0.0982 _pdbx_refine_tls.S[2][3] -0.1382 _pdbx_refine_tls.S[2][1] -0.0672 _pdbx_refine_tls.S[3][1] -0.1034 _pdbx_refine_tls.S[3][2] 0.3395 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 23 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 129 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 PHASER 2.3.0 ? program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 4 SCALA 3.3.20 ? package 'Phil Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' ? ? ? 5 REFMAC 5.7.0032 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 6 MOSFLM . ? ? ? ? 'data reduction' ? ? ? # _pdbx_entry_details.entry_id 4OUQ _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THIS CONSTRUCT (RESIDUES 22-130) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLN 53 ? CG ? A GLN 33 CG 2 1 Y 1 A GLN 53 ? CD ? A GLN 33 CD 3 1 Y 1 A GLN 53 ? OE1 ? A GLN 33 OE1 4 1 Y 1 A GLN 53 ? NE2 ? A GLN 33 NE2 5 1 Y 1 A GLU 57 ? CD ? A GLU 37 CD 6 1 Y 1 A GLU 57 ? OE1 ? A GLU 37 OE1 7 1 Y 1 A GLU 57 ? OE2 ? A GLU 37 OE2 8 1 Y 1 A LYS 76 ? CD ? A LYS 56 CD 9 1 Y 1 A LYS 76 ? CE ? A LYS 56 CE 10 1 Y 1 A LYS 76 ? NZ ? A LYS 56 NZ 11 1 Y 1 A ARG 112 ? CG ? A ARG 92 CG 12 1 Y 1 A ARG 112 ? CD ? A ARG 92 CD 13 1 Y 1 A ARG 112 ? NE ? A ARG 92 NE 14 1 Y 1 A ARG 112 ? CZ ? A ARG 92 CZ 15 1 Y 1 A ARG 112 ? NH1 ? A ARG 92 NH1 16 1 Y 1 A ARG 112 ? NH2 ? A ARG 92 NH2 17 1 Y 1 A LYS 117 ? CD ? A LYS 97 CD 18 1 Y 1 A LYS 117 ? CE ? A LYS 97 CE 19 1 Y 1 A LYS 117 ? NZ ? A LYS 97 NZ 20 1 Y 1 A THR 128 ? CG2 ? A THR 108 CG2 21 1 Y 1 A ASN 129 ? CA ? A ASN 109 CA 22 1 Y 1 A ASN 129 ? C ? A ASN 109 C 23 1 Y 1 A ASN 129 ? O ? A ASN 109 O 24 1 Y 1 A ASN 129 ? CB ? A ASN 109 CB 25 1 Y 1 A ASN 129 ? CG ? A ASN 109 CG 26 1 Y 1 A ASN 129 ? OD1 ? A ASN 109 OD1 27 1 Y 1 A ASN 129 ? ND2 ? A ASN 109 ND2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A GLN 22 ? A GLN 2 3 1 Y 1 A GLU 90 ? A GLU 70 4 1 Y 1 A GLU 130 ? A GLU 110 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #