HEADER TRANSFERASE 20-FEB-14 4OV9 TITLE STRUCTURE OF ISOPROPYLMALATE SYNTHASE BINDING WITH ALPHA- TITLE 2 ISOPROPYLMALATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOPROPYLMALATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ALPHA-ISOPROPYLMALATE SYNTHASE ALPHA-IPM SYNTHETASE; COMPND 5 EC: 2.3.3.13; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEPTOSPIRA BIFLEXA; SOURCE 3 ORGANISM_TAXID: 456481; SOURCE 4 STRAIN: PATOC 1 / ATCC 23582 / PARIS; SOURCE 5 GENE: IPMS2, LEPBI_I1108, LEUA2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-28B KEYWDS ALPHA/BETA TIM BARREL, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.ZHANG,J.WU,C.WANG,P.ZHANG REVDAT 4 20-MAR-24 4OV9 1 REMARK SEQADV LINK REVDAT 3 22-NOV-17 4OV9 1 REMARK REVDAT 2 18-NOV-15 4OV9 1 JRNL REVDAT 1 20-AUG-14 4OV9 0 JRNL AUTH Z.ZHANG,J.WU,W.LIN,J.WANG,H.YAN,W.ZHAO,J.MA,J.DING,P.ZHANG, JRNL AUTH 2 G.P.ZHAO JRNL TITL SUBDOMAIN II OF ALPHA-ISOPROPYLMALATE SYNTHASE IS ESSENTIAL JRNL TITL 2 FOR ACTIVITY: INFERRING A MECHANISM OF FEEDBACK INHIBITION. JRNL REF J.BIOL.CHEM. V. 289 27966 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 25128527 JRNL DOI 10.1074/JBC.M114.559716 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 23688 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1217 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1604 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.1770 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.2050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2952 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 148 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.56000 REMARK 3 B22 (A**2) : 0.56000 REMARK 3 B33 (A**2) : -0.84000 REMARK 3 B12 (A**2) : 0.28000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.161 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.097 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.416 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3019 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4086 ; 1.158 ; 1.948 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 378 ; 5.204 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 136 ;41.112 ;24.632 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 527 ;14.975 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;21.857 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 469 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2248 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3018 ; 2.296 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 44 ;17.637 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3072 ; 7.186 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4OV9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000084991. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23769 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.12200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.41800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL, PH 8.5, 0.8MM SODIUM REMARK 280 FORMATE, 30% PEG 2000 MME, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 15.57300 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 31.14600 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 31.14600 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 15.57300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 197.03100 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 113.75590 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 15.57300 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 ASP A 303 REMARK 465 GLY A 304 REMARK 465 VAL A 305 REMARK 465 THR A 306 REMARK 465 LYS A 307 REMARK 465 GLN A 388 REMARK 465 SER A 389 REMARK 465 LEU A 390 REMARK 465 LEU A 391 REMARK 465 THR A 392 REMARK 465 TYR A 393 REMARK 465 GLN A 394 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 302 CG CD OE1 NE2 REMARK 470 GLN A 337 CG CD OE1 NE2 REMARK 470 SER A 370 OG REMARK 470 SER A 371 OG REMARK 470 ARG A 372 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 373 CG CD OE1 OE2 REMARK 470 ASN A 374 CG OD1 ND2 REMARK 470 ASN A 375 CG OD1 ND2 REMARK 470 ARG A 376 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 375 CB - CA - C ANGL. DEV. = -16.1 DEGREES REMARK 500 ARG A 376 N - CA - C ANGL. DEV. = 32.9 DEGREES REMARK 500 GLU A 377 N - CA - CB ANGL. DEV. = -14.9 DEGREES REMARK 500 GLU A 377 N - CA - C ANGL. DEV. = 22.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 14 -71.97 -117.75 REMARK 500 VAL A 112 -62.20 -103.60 REMARK 500 TYR A 182 -114.43 -114.90 REMARK 500 LYS A 199 -122.37 53.17 REMARK 500 ASN A 235 19.75 56.75 REMARK 500 ARG A 240 -111.22 63.04 REMARK 500 ILE A 288 -53.75 76.68 REMARK 500 GLU A 330 93.26 -38.10 REMARK 500 GLN A 337 115.19 63.88 REMARK 500 SER A 338 -2.53 91.50 REMARK 500 SER A 371 33.31 -79.92 REMARK 500 ASN A 374 -71.24 -51.64 REMARK 500 LEU A 386 24.41 -77.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 15 OD2 REMARK 620 2 HIS A 207 NE2 88.4 REMARK 620 3 HIS A 209 NE2 99.0 100.1 REMARK 620 4 VPM A 402 OAD 174.2 89.8 86.8 REMARK 620 5 VPM A 402 OAG 96.3 91.4 161.0 78.2 REMARK 620 6 HOH A 514 O 88.2 176.1 82.3 93.4 87.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VPM A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4OV4 RELATED DB: PDB DBREF 4OV9 A 1 394 UNP B0SN40 B0SN40_LEPBP 1 394 SEQADV 4OV9 MET A -19 UNP B0SN40 EXPRESSION TAG SEQADV 4OV9 GLY A -18 UNP B0SN40 EXPRESSION TAG SEQADV 4OV9 SER A -17 UNP B0SN40 EXPRESSION TAG SEQADV 4OV9 SER A -16 UNP B0SN40 EXPRESSION TAG SEQADV 4OV9 HIS A -15 UNP B0SN40 EXPRESSION TAG SEQADV 4OV9 HIS A -14 UNP B0SN40 EXPRESSION TAG SEQADV 4OV9 HIS A -13 UNP B0SN40 EXPRESSION TAG SEQADV 4OV9 HIS A -12 UNP B0SN40 EXPRESSION TAG SEQADV 4OV9 HIS A -11 UNP B0SN40 EXPRESSION TAG SEQADV 4OV9 HIS A -10 UNP B0SN40 EXPRESSION TAG SEQADV 4OV9 SER A -9 UNP B0SN40 EXPRESSION TAG SEQADV 4OV9 SER A -8 UNP B0SN40 EXPRESSION TAG SEQADV 4OV9 GLY A -7 UNP B0SN40 EXPRESSION TAG SEQADV 4OV9 LEU A -6 UNP B0SN40 EXPRESSION TAG SEQADV 4OV9 VAL A -5 UNP B0SN40 EXPRESSION TAG SEQADV 4OV9 PRO A -4 UNP B0SN40 EXPRESSION TAG SEQADV 4OV9 ARG A -3 UNP B0SN40 EXPRESSION TAG SEQADV 4OV9 GLY A -2 UNP B0SN40 EXPRESSION TAG SEQADV 4OV9 SER A -1 UNP B0SN40 EXPRESSION TAG SEQADV 4OV9 HIS A 0 UNP B0SN40 EXPRESSION TAG SEQRES 1 A 414 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 414 LEU VAL PRO ARG GLY SER HIS MET LYS PRO LYS THR ILE SEQRES 3 A 414 HIS ILE GLN ASP VAL THR LEU ARG ASP GLY ASN GLN ALA SEQRES 4 A 414 LEU LYS ARG PRO TRP THR ILE ASP GLU LYS ILE GLU VAL SEQRES 5 A 414 PHE ASP LEU LEU VAL GLU LEU ASN VAL ASP GLY ILE GLU SEQRES 6 A 414 VAL GLY PHE PRO SER SER ASN GLU THR GLU PHE HIS THR SEQRES 7 A 414 CYS GLN VAL LEU SER LYS ARG ALA PRO LYS GLY LYS PRO SEQRES 8 A 414 ILE ALA ALA LEU SER ARG ALA ASN GLN ASN GLU ILE ALA SEQRES 9 A 414 VAL THR TRP GLU ALA ILE GLN LYS ALA ASP CYS PRO ARG SEQRES 10 A 414 MET HIS ILE VAL TYR PRO VAL SER ASP PHE SER ILE LYS SEQRES 11 A 414 HIS VAL LEU LYS ILE SER GLU LYS GLU VAL LEU GLN LYS SEQRES 12 A 414 ILE ARG ASN SER ILE SER PHE ALA ARG SER ILE VAL GLY SEQRES 13 A 414 PRO GLY ILE GLU ILE GLN PHE SER GLY GLU HIS PHE GLY SEQRES 14 A 414 ASP ALA ILE GLU ASN PHE ALA PHE THR LYS GLU ALA PHE SEQRES 15 A 414 LEU THR ALA ILE GLU ALA GLY ALA ASN ILE ILE ASN LEU SEQRES 16 A 414 PRO ASN THR VAL GLU ARG TYR ARG PRO MET VAL PHE VAL SEQRES 17 A 414 ASN MET VAL LYS GLU ILE LYS ASP VAL VAL LYS ASP LYS SEQRES 18 A 414 ALA ILE ILE SER ILE HIS THR HIS ASN ASP LEU GLY MET SEQRES 19 A 414 ALA THR ALA THR SER VAL GLU SER VAL TYR VAL GLY ALA SEQRES 20 A 414 GLU GLN ILE GLU VAL ALA LEU ASN GLY LEU GLY GLU ARG SEQRES 21 A 414 ALA GLY ASN THR ASN LEU TYR GLU THR ALA ILE ALA LEU SEQRES 22 A 414 HIS GLN ASN GLY GLU ASN LEU ASN ILE ASN PHE GLN ARG SEQRES 23 A 414 ILE TYR PRO THR ALA LYS ARG ILE SER GLU LEU THR GLY SEQRES 24 A 414 ILE PRO ILE GLY GLU LYS THR PRO ILE ILE GLY GLU ASP SEQRES 25 A 414 ILE PHE SER HIS ARG SER GLY ILE HIS GLN ASP GLY VAL SEQRES 26 A 414 THR LYS THR LEU HIS GLN SER LYS GLY ALA TYR ARG THR SEQRES 27 A 414 PHE SER PRO GLU PHE VAL GLY ARG MET ASP LYS GLU THR SEQRES 28 A 414 ILE SER PHE THR ASN GLN SER GLY HIS LYS ALA ILE GLU SEQRES 29 A 414 PHE LEU LEU HIS GLN ARG GLY ILE GLN VAL SER LYS GLU SEQRES 30 A 414 GLY ILE HIS HIS LEU PHE SER LEU ALA LYS SER ILE SER SEQRES 31 A 414 SER ARG GLU ASN ASN ARG GLU ILE THR GLU ALA GLU LEU SEQRES 32 A 414 VAL ALA LEU SER GLN SER LEU LEU THR TYR GLN HET ZN A 401 1 HET VPM A 402 12 HETNAM ZN ZINC ION HETNAM VPM (2S)-2-HYDROXY-2-(PROPAN-2-YL)BUTANEDIOIC ACID FORMUL 2 ZN ZN 2+ FORMUL 3 VPM C7 H12 O5 FORMUL 4 HOH *148(H2 O) HELIX 1 1 ARG A 14 ALA A 19 1 6 HELIX 2 2 THR A 25 ASN A 40 1 16 HELIX 3 3 ASN A 52 ALA A 66 1 15 HELIX 4 4 ASN A 79 GLN A 91 1 13 HELIX 5 5 SER A 105 VAL A 112 1 8 HELIX 6 6 SER A 116 GLY A 136 1 21 HELIX 7 7 HIS A 147 ALA A 151 5 5 HELIX 8 8 ASN A 154 GLY A 169 1 16 HELIX 9 9 ARG A 183 LYS A 199 1 17 HELIX 10 10 MET A 214 TYR A 224 1 11 HELIX 11 11 ALA A 233 LEU A 237 5 5 HELIX 12 12 ASN A 245 ASN A 256 1 12 HELIX 13 13 ASN A 263 GLN A 265 5 3 HELIX 14 14 ARG A 266 GLY A 279 1 14 HELIX 15 15 LEU A 309 TYR A 316 1 8 HELIX 16 16 SER A 320 GLY A 325 5 6 HELIX 17 17 SER A 338 ARG A 350 1 13 HELIX 18 18 SER A 355 SER A 371 1 17 HELIX 19 19 THR A 379 LEU A 386 1 8 SHEET 1 A 9 HIS A 7 ASP A 10 0 SHEET 2 A 9 GLY A 43 GLY A 47 1 O GLY A 43 N ASP A 10 SHEET 3 A 9 PRO A 71 ARG A 77 1 O ALA A 73 N VAL A 46 SHEET 4 A 9 CYS A 95 PRO A 103 1 O ARG A 97 N ILE A 72 SHEET 5 A 9 GLU A 140 GLU A 146 1 O GLN A 142 N MET A 98 SHEET 6 A 9 ILE A 172 ASN A 177 1 O ASN A 174 N PHE A 143 SHEET 7 A 9 ILE A 203 THR A 208 1 O SER A 205 N ILE A 173 SHEET 8 A 9 GLN A 229 VAL A 232 1 O GLU A 231 N ILE A 206 SHEET 9 A 9 HIS A 7 ASP A 10 1 N GLN A 9 O ILE A 230 LINK OD2 ASP A 15 ZN ZN A 401 1555 1555 2.10 LINK NE2 HIS A 207 ZN ZN A 401 1555 1555 2.24 LINK NE2 HIS A 209 ZN ZN A 401 1555 1555 2.11 LINK ZN ZN A 401 OAD VPM A 402 1555 1555 2.07 LINK ZN ZN A 401 OAG VPM A 402 1555 1555 2.22 LINK ZN ZN A 401 O HOH A 514 1555 1555 2.25 SITE 1 AC1 5 ASP A 15 HIS A 207 HIS A 209 VPM A 402 SITE 2 AC1 5 HOH A 514 SITE 1 AC2 12 ARG A 14 ASP A 15 GLN A 18 GLU A 146 SITE 2 AC2 12 PRO A 176 THR A 178 HIS A 207 HIS A 209 SITE 3 AC2 12 ZN A 401 HOH A 514 HOH A 568 HOH A 622 CRYST1 131.354 131.354 46.719 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007613 0.004395 0.000000 0.00000 SCALE2 0.000000 0.008791 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021405 0.00000