HEADER TRANSFERASE 21-FEB-14 4OVD TITLE CRYSTAL STRUCTURE OF A PUTATIVE PEPTIDOGLYCAN GLYCOSYLTRANSFERASE FROM TITLE 2 ATOPOBIUM PARVULUM DSM 20469 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDOGLYCAN GLYCOSYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: D,D-TRANSPEPTIDASE; COMPND 5 EC: 2.4.1.129; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ATOPOBIUM PARVULUM; SOURCE 3 ORGANISM_COMMON: STREPTOCOCCUS PARVULUS; SOURCE 4 ORGANISM_TAXID: 521095; SOURCE 5 STRAIN: DSM 20469; SOURCE 6 GENE: APAR_0480; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21MAGIC; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG68 KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, MIDWEST CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, MCSG, D, D-TRANSPEPTIDASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.V.FILIPPOVA,Z.WAWRZAK,O.KIRYUKHINA,G.BABNIGG,S.CLANCY,A.JOACHIMIAK, AUTHOR 2 W.F.ANDERSON,MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 4 24-JAN-18 4OVD 1 JRNL REVDAT 3 22-NOV-17 4OVD 1 REMARK REVDAT 2 13-AUG-14 4OVD 1 AUTHOR JRNL REVDAT 1 12-MAR-14 4OVD 0 JRNL AUTH E.V.FILIPPOVA,Z.WAWRZAK,O.KIRYUKHINA,G.BABNIGG,S.CLANCY, JRNL AUTH 2 A.JOACHIMIAK,W.F.ANDERSON, JRNL AUTH 3 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE PEPTIDOGLYCAN JRNL TITL 2 GLYCOSYLTRANSFERASE FROM ATOPOBIUM PARVULUM DSM 20469 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 30883 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1646 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2225 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.63 REMARK 3 BIN R VALUE (WORKING SET) : 0.2490 REMARK 3 BIN FREE R VALUE SET COUNT : 121 REMARK 3 BIN FREE R VALUE : 0.2730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3178 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 156 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.36000 REMARK 3 B22 (A**2) : 3.70000 REMARK 3 B33 (A**2) : -0.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.86000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.160 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.156 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.128 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.579 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3231 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3015 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4377 ; 2.107 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6928 ; 0.908 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 418 ; 3.501 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 146 ;32.197 ;25.342 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 482 ;11.566 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;16.628 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 496 ; 0.135 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3763 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 729 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1684 ; 4.065 ; 3.057 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1683 ; 4.061 ; 3.055 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2098 ; 5.057 ; 4.549 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2099 ; 5.056 ; 4.552 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1547 ; 5.957 ; 3.706 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1548 ; 5.956 ; 3.708 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2280 ; 8.333 ; 5.333 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3764 ;10.066 ;14.646 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3734 ;10.053 ;14.576 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 61 A 68 REMARK 3 ORIGIN FOR THE GROUP (A): -13.2722 8.1839 -3.7245 REMARK 3 T TENSOR REMARK 3 T11: 0.1671 T22: 0.2202 REMARK 3 T33: 0.0670 T12: -0.1201 REMARK 3 T13: -0.0040 T23: 0.0424 REMARK 3 L TENSOR REMARK 3 L11: 13.7490 L22: 0.7812 REMARK 3 L33: 0.3063 L12: -2.3067 REMARK 3 L13: 0.6773 L23: 0.0720 REMARK 3 S TENSOR REMARK 3 S11: -0.0433 S12: -0.1792 S13: 0.4843 REMARK 3 S21: -0.1580 S22: 0.1323 S23: -0.1718 REMARK 3 S31: 0.0429 S32: -0.1216 S33: -0.0890 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 69 A 279 REMARK 3 ORIGIN FOR THE GROUP (A): 9.6675 13.2856 -13.1760 REMARK 3 T TENSOR REMARK 3 T11: 0.1465 T22: 0.2957 REMARK 3 T33: 0.1434 T12: -0.0047 REMARK 3 T13: -0.0312 T23: -0.0700 REMARK 3 L TENSOR REMARK 3 L11: 3.3583 L22: 0.0286 REMARK 3 L33: 1.4549 L12: 0.2746 REMARK 3 L13: -1.5817 L23: -0.1481 REMARK 3 S TENSOR REMARK 3 S11: 0.0607 S12: -0.6534 S13: 0.2489 REMARK 3 S21: 0.0158 S22: -0.0242 S23: 0.0113 REMARK 3 S31: -0.0133 S32: 0.0383 S33: -0.0366 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 280 A 344 REMARK 3 ORIGIN FOR THE GROUP (A): 29.5004 8.5654 -37.1996 REMARK 3 T TENSOR REMARK 3 T11: 0.1009 T22: 0.0198 REMARK 3 T33: 0.0963 T12: 0.0015 REMARK 3 T13: -0.0661 T23: 0.0191 REMARK 3 L TENSOR REMARK 3 L11: 3.3441 L22: 0.2331 REMARK 3 L33: 0.4164 L12: 0.0037 REMARK 3 L13: -0.6915 L23: 0.1472 REMARK 3 S TENSOR REMARK 3 S11: 0.0407 S12: 0.1126 S13: 0.1133 REMARK 3 S21: -0.0455 S22: -0.0410 S23: 0.0168 REMARK 3 S31: -0.0226 S32: -0.0717 S33: 0.0003 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 345 A 545 REMARK 3 ORIGIN FOR THE GROUP (A): 29.7908 6.1874 -31.5477 REMARK 3 T TENSOR REMARK 3 T11: 0.1085 T22: 0.0302 REMARK 3 T33: 0.1034 T12: -0.0008 REMARK 3 T13: -0.0590 T23: 0.0327 REMARK 3 L TENSOR REMARK 3 L11: 3.0867 L22: 0.4979 REMARK 3 L33: 0.5743 L12: -0.0597 REMARK 3 L13: -0.5932 L23: 0.0478 REMARK 3 S TENSOR REMARK 3 S11: -0.0334 S12: -0.1653 S13: -0.0991 REMARK 3 S21: 0.0134 S22: -0.0335 S23: 0.0152 REMARK 3 S31: 0.0318 S32: 0.0008 S33: 0.0670 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 546 A 571 REMARK 3 ORIGIN FOR THE GROUP (A): 32.4008 18.6230 -18.4346 REMARK 3 T TENSOR REMARK 3 T11: 0.0560 T22: 0.1935 REMARK 3 T33: 0.1503 T12: -0.0308 REMARK 3 T13: -0.0060 T23: -0.1568 REMARK 3 L TENSOR REMARK 3 L11: 2.7005 L22: 1.6977 REMARK 3 L33: 6.3602 L12: -0.1888 REMARK 3 L13: -0.0642 L23: -0.7266 REMARK 3 S TENSOR REMARK 3 S11: 0.0882 S12: -0.7115 S13: 0.5929 REMARK 3 S21: -0.0029 S22: -0.0389 S23: 0.0530 REMARK 3 S31: 0.2197 S32: 0.0620 S33: -0.0493 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4OVD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000084995. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : 3.0 UNDULATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AIMLESS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32538 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 29.170 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.05200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM CHLORIDE, 0.1 M HEPES, REMARK 280 20% PEG6000, PH 7, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 76.84000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.75500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 76.84000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.75500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 745 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 11 REMARK 465 HIS A 12 REMARK 465 HIS A 13 REMARK 465 HIS A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 HIS A 17 REMARK 465 SER A 18 REMARK 465 SER A 19 REMARK 465 GLY A 20 REMARK 465 VAL A 21 REMARK 465 ASP A 22 REMARK 465 LEU A 23 REMARK 465 TRP A 24 REMARK 465 SER A 25 REMARK 465 HIS A 26 REMARK 465 PRO A 27 REMARK 465 GLN A 28 REMARK 465 PHE A 29 REMARK 465 GLU A 30 REMARK 465 LYS A 31 REMARK 465 GLY A 32 REMARK 465 THR A 33 REMARK 465 GLU A 34 REMARK 465 ASN A 35 REMARK 465 LEU A 36 REMARK 465 TYR A 37 REMARK 465 PHE A 38 REMARK 465 GLN A 39 REMARK 465 SER A 40 REMARK 465 ASN A 41 REMARK 465 ALA A 42 REMARK 465 LEU A 43 REMARK 465 GLN A 44 REMARK 465 ILE A 45 REMARK 465 PHE A 46 REMARK 465 THR A 47 REMARK 465 ALA A 48 REMARK 465 ALA A 49 REMARK 465 ASP A 50 REMARK 465 LEU A 51 REMARK 465 SER A 52 REMARK 465 LYS A 53 REMARK 465 GLY A 54 REMARK 465 ALA A 55 REMARK 465 GLU A 56 REMARK 465 ASN A 57 REMARK 465 ASN A 58 REMARK 465 ARG A 59 REMARK 465 THR A 60 REMARK 465 ASP A 88 REMARK 465 ILE A 89 REMARK 465 TYR A 90 REMARK 465 ALA A 91 REMARK 465 ASN A 92 REMARK 465 PRO A 93 REMARK 465 SER A 94 REMARK 465 GLU A 95 REMARK 465 ILE A 96 REMARK 465 LYS A 97 REMARK 465 ASP A 98 REMARK 465 ALA A 99 REMARK 465 SER A 100 REMARK 465 THR A 101 REMARK 465 VAL A 102 REMARK 465 ALA A 103 REMARK 465 GLN A 104 REMARK 465 VAL A 105 REMARK 465 ILE A 106 REMARK 465 ALA A 107 REMARK 465 SER A 108 REMARK 465 PHE A 109 REMARK 465 LEU A 110 REMARK 465 GLY A 111 REMARK 465 GLY A 112 REMARK 465 SER A 113 REMARK 465 PRO A 114 REMARK 465 SER A 115 REMARK 465 ASP A 116 REMARK 465 TYR A 117 REMARK 465 LEU A 118 REMARK 465 GLY A 119 REMARK 465 ASP A 120 REMARK 465 LEU A 121 REMARK 465 GLN A 122 REMARK 465 GLN A 123 REMARK 465 ASP A 124 REMARK 465 THR A 125 REMARK 465 THR A 126 REMARK 465 PHE A 127 REMARK 465 VAL A 128 REMARK 465 TYR A 129 REMARK 465 VAL A 130 REMARK 465 ARG A 131 REMARK 465 ARG A 132 REMARK 465 ARG A 133 REMARK 465 VAL A 134 REMARK 465 ASP A 135 REMARK 465 THR A 136 REMARK 465 ASP A 137 REMARK 465 THR A 138 REMARK 465 ALA A 139 REMARK 465 SER A 140 REMARK 465 LYS A 141 REMARK 465 ILE A 142 REMARK 465 GLU A 143 REMARK 465 LYS A 144 REMARK 465 ALA A 145 REMARK 465 LEU A 146 REMARK 465 GLY A 147 REMARK 465 GLU A 148 REMARK 465 LYS A 149 REMARK 465 LYS A 150 REMARK 465 LEU A 151 REMARK 465 LYS A 152 REMARK 465 GLY A 153 REMARK 465 ILE A 154 REMARK 465 TYR A 155 REMARK 465 PHE A 156 REMARK 465 VAL A 157 REMARK 465 VAL A 204 REMARK 465 GLU A 205 REMARK 465 THR A 206 REMARK 465 GLY A 207 REMARK 465 ALA A 208 REMARK 465 GLY A 209 REMARK 465 GLY A 210 REMARK 465 THR A 211 REMARK 465 PRO A 212 REMARK 465 ILE A 213 REMARK 465 ALA A 214 REMARK 465 GLY A 215 REMARK 465 GLY A 216 REMARK 465 THR A 217 REMARK 465 GLU A 282 REMARK 465 SER A 283 REMARK 465 ASP A 284 REMARK 465 ASN A 285 REMARK 465 GLY A 286 REMARK 465 ILE A 572 REMARK 465 ASN A 573 REMARK 465 PRO A 574 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 87 CG CD CE NZ REMARK 470 MSE A 450 CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 86 3.80 -63.00 REMARK 500 ASN A 529 68.63 38.79 REMARK 500 ASP A 543 60.82 63.44 REMARK 500 SER A 551 -74.89 -129.55 REMARK 500 ILE A 569 106.35 -53.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MCSG-APC110122 RELATED DB: TARGETTRACK DBREF 4OVD A 43 574 UNP C8W9X3 C8W9X3_ATOPD 43 574 SEQADV 4OVD MSE A 11 UNP C8W9X3 EXPRESSION TAG SEQADV 4OVD HIS A 12 UNP C8W9X3 EXPRESSION TAG SEQADV 4OVD HIS A 13 UNP C8W9X3 EXPRESSION TAG SEQADV 4OVD HIS A 14 UNP C8W9X3 EXPRESSION TAG SEQADV 4OVD HIS A 15 UNP C8W9X3 EXPRESSION TAG SEQADV 4OVD HIS A 16 UNP C8W9X3 EXPRESSION TAG SEQADV 4OVD HIS A 17 UNP C8W9X3 EXPRESSION TAG SEQADV 4OVD SER A 18 UNP C8W9X3 EXPRESSION TAG SEQADV 4OVD SER A 19 UNP C8W9X3 EXPRESSION TAG SEQADV 4OVD GLY A 20 UNP C8W9X3 EXPRESSION TAG SEQADV 4OVD VAL A 21 UNP C8W9X3 EXPRESSION TAG SEQADV 4OVD ASP A 22 UNP C8W9X3 EXPRESSION TAG SEQADV 4OVD LEU A 23 UNP C8W9X3 EXPRESSION TAG SEQADV 4OVD TRP A 24 UNP C8W9X3 EXPRESSION TAG SEQADV 4OVD SER A 25 UNP C8W9X3 EXPRESSION TAG SEQADV 4OVD HIS A 26 UNP C8W9X3 EXPRESSION TAG SEQADV 4OVD PRO A 27 UNP C8W9X3 EXPRESSION TAG SEQADV 4OVD GLN A 28 UNP C8W9X3 EXPRESSION TAG SEQADV 4OVD PHE A 29 UNP C8W9X3 EXPRESSION TAG SEQADV 4OVD GLU A 30 UNP C8W9X3 EXPRESSION TAG SEQADV 4OVD LYS A 31 UNP C8W9X3 EXPRESSION TAG SEQADV 4OVD GLY A 32 UNP C8W9X3 EXPRESSION TAG SEQADV 4OVD THR A 33 UNP C8W9X3 EXPRESSION TAG SEQADV 4OVD GLU A 34 UNP C8W9X3 EXPRESSION TAG SEQADV 4OVD ASN A 35 UNP C8W9X3 EXPRESSION TAG SEQADV 4OVD LEU A 36 UNP C8W9X3 EXPRESSION TAG SEQADV 4OVD TYR A 37 UNP C8W9X3 EXPRESSION TAG SEQADV 4OVD PHE A 38 UNP C8W9X3 EXPRESSION TAG SEQADV 4OVD GLN A 39 UNP C8W9X3 EXPRESSION TAG SEQADV 4OVD SER A 40 UNP C8W9X3 EXPRESSION TAG SEQADV 4OVD ASN A 41 UNP C8W9X3 EXPRESSION TAG SEQADV 4OVD ALA A 42 UNP C8W9X3 EXPRESSION TAG SEQRES 1 A 564 MSE HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 564 TRP SER HIS PRO GLN PHE GLU LYS GLY THR GLU ASN LEU SEQRES 3 A 564 TYR PHE GLN SER ASN ALA LEU GLN ILE PHE THR ALA ALA SEQRES 4 A 564 ASP LEU SER LYS GLY ALA GLU ASN ASN ARG THR ASN ASP SEQRES 5 A 564 ILE VAL LEU HIS ALA ARG ARG GLY THR ILE TYR ASP ARG SEQRES 6 A 564 ASN GLY ASN VAL LEU ALA MSE SER VAL ASP CYS LYS ASP SEQRES 7 A 564 ILE TYR ALA ASN PRO SER GLU ILE LYS ASP ALA SER THR SEQRES 8 A 564 VAL ALA GLN VAL ILE ALA SER PHE LEU GLY GLY SER PRO SEQRES 9 A 564 SER ASP TYR LEU GLY ASP LEU GLN GLN ASP THR THR PHE SEQRES 10 A 564 VAL TYR VAL ARG ARG ARG VAL ASP THR ASP THR ALA SER SEQRES 11 A 564 LYS ILE GLU LYS ALA LEU GLY GLU LYS LYS LEU LYS GLY SEQRES 12 A 564 ILE TYR PHE VAL ASN ASN THR LYS ARG VAL TYR PRO TYR SEQRES 13 A 564 GLY ASN VAL GLY VAL GLN ILE LEU GLY PHE VAL ASN ALA SEQRES 14 A 564 ASP ASN GLU GLY ALA SER GLY LEU GLU TYR TYR TYR ASN SEQRES 15 A 564 ASP ILE LEU ALA GLY THR ASN GLY HIS MSE ILE VAL GLU SEQRES 16 A 564 THR GLY ALA GLY GLY THR PRO ILE ALA GLY GLY THR SER SEQRES 17 A 564 ASN ILE THR GLU ALA GLN ASN GLY GLN ASP ILE VAL LEU SEQRES 18 A 564 SER ILE ASP ILE GLU LEU GLN LYS LYS ALA GLU GLU GLN SEQRES 19 A 564 LEU THR ALA ALA VAL LYS ASP PHE GLU ALA LYS GLN GLY SEQRES 20 A 564 GLY SER ILE MSE ALA MSE ASN PRO ARG THR GLY GLU ILE SEQRES 21 A 564 TYR ALA ALA ALA SER TYR PRO LEU PRO ASP PHE GLU SER SEQRES 22 A 564 ASP ASN GLY VAL ASP TYR GLU SER LEU ASN LEU LYS LEU SEQRES 23 A 564 VAL SER SER ILE TYR GLU PRO GLY SER VAL PHE LYS VAL SEQRES 24 A 564 ILE THR THR SER ILE GLY VAL ASP ASN ASN LEU PHE GLY SEQRES 25 A 564 PRO ASN SER THR PHE ASN ILE PRO THR GLU LEU GLN VAL SEQRES 26 A 564 GLY ASP ASN LYS VAL THR ASP ASP ASP TRP ARG THR SER SEQRES 27 A 564 ALA MSE ASP MSE SER VAL ARG GLU MSE LEU ARG ARG SER SEQRES 28 A 564 SER ASN VAL GLY MSE ALA PHE LEU GLU THR GLN LEU ILE SEQRES 29 A 564 GLY ASP LYS ARG PHE ALA GLU GLY ILE ASP LYS PHE GLY SEQRES 30 A 564 ILE GLY HIS THR THR GLY ILE ASP PHE PRO GLY GLU ALA SEQRES 31 A 564 THR GLY ILE VAL ARG SER LEU ASP GLN TYR GLU GLY PRO SEQRES 32 A 564 THR GLY GLY ASN MSE ALA PHE GLY GLN GLY LEU ALA ILE SEQRES 33 A 564 PRO PHE ILE GLN VAL ILE ARG ALA TYR THR ALA VAL ALA SEQRES 34 A 564 ASN LYS GLY THR MSE VAL THR PRO HIS PHE MSE VAL SER SEQRES 35 A 564 LYS GLY GLY GLN GLU VAL SER TRP PRO THR LYS ASP VAL SEQRES 36 A 564 ILE SER SER SER THR ALA SER ALA GLU LEU ASP MSE MSE SEQRES 37 A 564 THR THR VAL VAL LYS GLU GLY THR GLY VAL ARG ALA GLY SEQRES 38 A 564 ILE TYR GLY TYR THR VAL ALA GLY LYS THR GLY THR GLY SEQRES 39 A 564 GLN GLN VAL VAL GLU GLU THR GLY SER TYR GLY GLU ASN SEQRES 40 A 564 SER GLY PHE VAL ALA SER PHE CYS GLY ILE VAL ASN PRO SEQRES 41 A 564 SER GLU SER ASP LEU MSE VAL TYR VAL GLY LEU ASN ASP SEQRES 42 A 564 THR HIS GLN LEU ALA SER GLN SER ALA ALA VAL VAL PHE SEQRES 43 A 564 SER GLN PHE ALA LYS ASP ALA ALA THR ARG LEU ASN ILE SEQRES 44 A 564 GLN PRO ILE ASN PRO MODRES 4OVD MSE A 82 MET SELENOMETHIONINE MODRES 4OVD MSE A 202 MET SELENOMETHIONINE MODRES 4OVD MSE A 261 MET SELENOMETHIONINE MODRES 4OVD MSE A 263 MET SELENOMETHIONINE MODRES 4OVD MSE A 350 MET SELENOMETHIONINE MODRES 4OVD MSE A 352 MET SELENOMETHIONINE MODRES 4OVD MSE A 357 MET SELENOMETHIONINE MODRES 4OVD MSE A 366 MET SELENOMETHIONINE MODRES 4OVD MSE A 418 MET SELENOMETHIONINE MODRES 4OVD MSE A 444 MET SELENOMETHIONINE MODRES 4OVD MSE A 450 MET SELENOMETHIONINE MODRES 4OVD MSE A 477 MET SELENOMETHIONINE MODRES 4OVD MSE A 478 MET SELENOMETHIONINE MODRES 4OVD MSE A 536 MET SELENOMETHIONINE HET MSE A 82 8 HET MSE A 202 8 HET MSE A 261 8 HET MSE A 263 8 HET MSE A 350 8 HET MSE A 352 8 HET MSE A 357 8 HET MSE A 366 8 HET MSE A 418 8 HET MSE A 444 8 HET MSE A 450 7 HET MSE A 477 8 HET MSE A 478 8 HET MSE A 536 8 HET CA A 601 1 HETNAM MSE SELENOMETHIONINE HETNAM CA CALCIUM ION FORMUL 1 MSE 14(C5 H11 N O2 SE) FORMUL 2 CA CA 2+ FORMUL 3 HOH *156(H2 O) HELIX 1 1 GLY A 170 GLY A 175 1 6 HELIX 2 2 SER A 185 TYR A 191 1 7 HELIX 3 3 TYR A 191 ALA A 196 1 6 HELIX 4 4 ASP A 234 GLU A 253 1 20 HELIX 5 5 ASP A 288 ASN A 293 5 6 HELIX 6 6 LEU A 294 SER A 299 1 6 HELIX 7 7 PRO A 303 VAL A 306 5 4 HELIX 8 8 PHE A 307 ASN A 318 1 12 HELIX 9 9 VAL A 354 SER A 361 1 8 HELIX 10 10 SER A 362 LEU A 373 1 12 HELIX 11 11 GLY A 375 PHE A 386 1 12 HELIX 12 12 SER A 406 TYR A 410 5 5 HELIX 13 13 PRO A 413 ALA A 419 1 7 HELIX 14 14 PRO A 427 ASN A 440 1 14 HELIX 15 15 SER A 467 GLY A 485 1 19 HELIX 16 16 GLY A 487 GLY A 491 5 5 HELIX 17 17 PRO A 530 SER A 533 5 4 HELIX 18 18 LEU A 547 GLN A 550 5 4 HELIX 19 19 SER A 551 LEU A 567 1 17 SHEET 1 A 3 ILE A 63 LEU A 65 0 SHEET 2 A 3 GLY A 200 MSE A 202 -1 O MSE A 202 N ILE A 63 SHEET 3 A 3 ILE A 220 THR A 221 -1 O THR A 221 N HIS A 201 SHEET 1 B 6 LYS A 161 VAL A 163 0 SHEET 2 B 6 VAL A 79 VAL A 84 -1 N VAL A 84 O LYS A 161 SHEET 3 B 6 ILE A 72 TYR A 73 -1 N ILE A 72 O LEU A 80 SHEET 4 B 6 ILE A 229 LEU A 231 1 O LEU A 231 N TYR A 73 SHEET 5 B 6 MSE A 450 LYS A 453 -1 O SER A 452 N VAL A 230 SHEET 6 B 6 GLN A 456 GLU A 457 -1 O GLN A 456 N LYS A 453 SHEET 1 C 5 ILE A 270 TYR A 276 0 SHEET 2 C 5 GLY A 258 MSE A 263 -1 N GLY A 258 O TYR A 276 SHEET 3 C 5 LEU A 535 ASN A 542 -1 O MSE A 536 N MSE A 263 SHEET 4 C 5 PHE A 520 VAL A 528 -1 N ALA A 522 O LEU A 541 SHEET 5 C 5 VAL A 497 GLN A 505 -1 N GLY A 504 O VAL A 521 SHEET 1 D 2 THR A 326 ILE A 329 0 SHEET 2 D 2 MSE A 350 SER A 353 -1 O MSE A 350 N ILE A 329 SHEET 1 E 2 GLU A 332 VAL A 335 0 SHEET 2 E 2 ASN A 338 THR A 341 -1 O VAL A 340 N LEU A 333 SHEET 1 F 2 THR A 443 MSE A 444 0 SHEET 2 F 2 LYS A 463 ASP A 464 -1 O LYS A 463 N MSE A 444 LINK C ALA A 81 N MSE A 82 1555 1555 1.32 LINK C MSE A 82 N SER A 83 1555 1555 1.33 LINK C HIS A 201 N MSE A 202 1555 1555 1.33 LINK C MSE A 202 N ILE A 203 1555 1555 1.33 LINK C ILE A 260 N MSE A 261 1555 1555 1.32 LINK C MSE A 261 N ALA A 262 1555 1555 1.32 LINK C ALA A 262 N MSE A 263 1555 1555 1.33 LINK C MSE A 263 N ASN A 264 1555 1555 1.32 LINK C ALA A 349 N MSE A 350 1555 1555 1.31 LINK C MSE A 350 N ASP A 351 1555 1555 1.32 LINK C ASP A 351 N MSE A 352 1555 1555 1.32 LINK C MSE A 352 N SER A 353 1555 1555 1.33 LINK C GLU A 356 N MSE A 357 1555 1555 1.34 LINK C MSE A 357 N LEU A 358 1555 1555 1.31 LINK C GLY A 365 N MSE A 366 1555 1555 1.35 LINK C MSE A 366 N ALA A 367 1555 1555 1.31 LINK C ASN A 417 N MSE A 418 1555 1555 1.31 LINK C MSE A 418 N ALA A 419 1555 1555 1.33 LINK C THR A 443 N MSE A 444 1555 1555 1.32 LINK C MSE A 444 N VAL A 445 1555 1555 1.33 LINK C PHE A 449 N MSE A 450 1555 1555 1.32 LINK C MSE A 450 N VAL A 451 1555 1555 1.31 LINK C ASP A 476 N MSE A 477 1555 1555 1.31 LINK C MSE A 477 N MSE A 478 1555 1555 1.33 LINK C MSE A 478 N THR A 479 1555 1555 1.33 LINK C LEU A 535 N MSE A 536 1555 1555 1.33 LINK C MSE A 536 N VAL A 537 1555 1555 1.32 LINK OG1 THR A 501 CA CA A 601 1555 1555 3.18 CISPEP 1 TYR A 276 PRO A 277 0 1.47 SITE 1 AC1 2 SER A 305 THR A 501 CRYST1 153.680 45.510 71.290 90.00 102.78 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006507 0.000000 0.001476 0.00000 SCALE2 0.000000 0.021973 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014384 0.00000