HEADER SOLUTE-BINDING PROTEIN 11-DEC-13 4OVQ TITLE CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM TITLE 2 ROSEOBACTER DENITRIFICANS, TARGET EFI-510230, WITH BOUND BETA-D- TITLE 3 GLUCURONATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRAP DICARBOXYLATE ABC TRANSPORTER, SUBSTRATE-BINDING COMPND 3 PROTEIN; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ROSEOBACTER DENITRIFICANS; SOURCE 3 ORGANISM_TAXID: 375451; SOURCE 4 STRAIN: OCH 114; SOURCE 5 GENE: RD1_3994,DCTP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS TRAP PERIPLASMIC SOLUTE BINDING FAMILY, STRUCTURAL GENOMICS, ENZYME KEYWDS 2 FUNCTION INITIATIVE, EFI, SOLUTE-BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,N.F.AL OBAIDI,L.L.MORISCO,S.R.WASSERMAN,S.SOJITRA, AUTHOR 2 M.STEAD,J.D.ATTONITO,A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,B.HILLERICH, AUTHOR 3 J.LOVE,R.D.SEIDEL,H.J.IMKER,J.A.GERLT,S.C.ALMO,ENZYME FUNCTION AUTHOR 4 INITIATIVE (EFI) REVDAT 5 27-DEC-23 4OVQ 1 HETSYN REVDAT 4 29-JUL-20 4OVQ 1 COMPND REMARK HETNAM SITE REVDAT 3 27-SEP-17 4OVQ 1 COMPND SOURCE KEYWDS JRNL REVDAT 3 2 1 REMARK REVDAT 2 25-FEB-15 4OVQ 1 JRNL REVDAT 1 22-JAN-14 4OVQ 0 JRNL AUTH M.W.VETTING,N.AL-OBAIDI,S.ZHAO,B.SAN FRANCISCO,J.KIM, JRNL AUTH 2 D.J.WICHELECKI,J.T.BOUVIER,J.O.SOLBIATI,H.VU,X.ZHANG, JRNL AUTH 3 D.A.RODIONOV,J.D.LOVE,B.S.HILLERICH,R.D.SEIDEL,R.J.QUINN, JRNL AUTH 4 A.L.OSTERMAN,J.E.CRONAN,M.P.JACOBSON,J.A.GERLT,S.C.ALMO JRNL TITL EXPERIMENTAL STRATEGIES FOR FUNCTIONAL ANNOTATION AND JRNL TITL 2 METABOLISM DISCOVERY: TARGETED SCREENING OF SOLUTE BINDING JRNL TITL 3 PROTEINS AND UNBIASED PANNING OF METABOLOMES. JRNL REF BIOCHEMISTRY V. 54 909 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 25540822 JRNL DOI 10.1021/BI501388Y REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 3 NUMBER OF REFLECTIONS : 46513 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2362 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.1515 - 3.8546 0.99 2692 161 0.1597 0.1792 REMARK 3 2 3.8546 - 3.0612 1.00 2761 133 0.1625 0.2003 REMARK 3 3 3.0612 - 2.6747 1.00 2739 150 0.1748 0.2131 REMARK 3 4 2.6747 - 2.4304 1.00 2739 143 0.1724 0.2078 REMARK 3 5 2.4304 - 2.2563 1.00 2725 148 0.1731 0.1881 REMARK 3 6 2.2563 - 2.1234 1.00 2718 163 0.1738 0.1892 REMARK 3 7 2.1234 - 2.0171 1.00 2744 137 0.1742 0.2280 REMARK 3 8 2.0171 - 1.9293 1.00 2730 154 0.1897 0.1987 REMARK 3 9 1.9293 - 1.8551 1.00 2758 124 0.1934 0.2168 REMARK 3 10 1.8551 - 1.7911 1.00 2800 131 0.1953 0.2715 REMARK 3 11 1.7911 - 1.7351 1.00 2698 141 0.2025 0.2663 REMARK 3 12 1.7351 - 1.6855 1.00 2774 141 0.2062 0.2322 REMARK 3 13 1.6855 - 1.6411 1.00 2718 161 0.2075 0.2404 REMARK 3 14 1.6411 - 1.6011 0.98 2639 152 0.2181 0.2517 REMARK 3 15 1.6011 - 1.5647 0.88 2420 140 0.2274 0.2622 REMARK 3 16 1.5647 - 1.5314 0.72 1999 101 0.2190 0.2772 REMARK 3 17 1.5314 - 1.5008 0.55 1494 82 0.2365 0.2750 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.94 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 2391 REMARK 3 ANGLE : 1.325 3260 REMARK 3 CHIRALITY : 0.079 354 REMARK 3 PLANARITY : 0.008 436 REMARK 3 DIHEDRAL : 12.796 861 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.9909 4.2910 -3.6424 REMARK 3 T TENSOR REMARK 3 T11: 0.0585 T22: 0.0912 REMARK 3 T33: 0.1689 T12: 0.0160 REMARK 3 T13: 0.0284 T23: -0.0673 REMARK 3 L TENSOR REMARK 3 L11: 0.4613 L22: 0.7671 REMARK 3 L33: 0.4197 L12: -0.4413 REMARK 3 L13: 0.0642 L23: 0.2210 REMARK 3 S TENSOR REMARK 3 S11: 0.0359 S12: 0.1553 S13: -0.2266 REMARK 3 S21: -0.0125 S22: -0.0920 S23: 0.3323 REMARK 3 S31: -0.0459 S32: -0.0210 S33: -0.0564 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 94 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.7198 6.6445 7.6020 REMARK 3 T TENSOR REMARK 3 T11: 0.2096 T22: 0.1751 REMARK 3 T33: 0.2150 T12: -0.0720 REMARK 3 T13: -0.0556 T23: -0.0221 REMARK 3 L TENSOR REMARK 3 L11: 0.4154 L22: 0.5043 REMARK 3 L33: 0.8286 L12: -0.2724 REMARK 3 L13: -0.1727 L23: 0.3730 REMARK 3 S TENSOR REMARK 3 S11: 0.0865 S12: -0.1053 S13: 0.2054 REMARK 3 S21: 0.2090 S22: -0.1564 S23: -0.1355 REMARK 3 S31: -0.2442 S32: 0.0742 S33: 0.0021 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 122 THROUGH 265 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.6289 -1.7886 6.7758 REMARK 3 T TENSOR REMARK 3 T11: 0.1070 T22: 0.0943 REMARK 3 T33: 0.0668 T12: -0.0112 REMARK 3 T13: 0.0068 T23: -0.0230 REMARK 3 L TENSOR REMARK 3 L11: 0.3755 L22: 1.0927 REMARK 3 L33: 0.4933 L12: -0.1298 REMARK 3 L13: 0.0719 L23: -0.1859 REMARK 3 S TENSOR REMARK 3 S11: 0.0858 S12: 0.0605 S13: -0.0208 REMARK 3 S21: 0.3289 S22: -0.1011 S23: -0.0775 REMARK 3 S31: -0.1462 S32: 0.1581 S33: -0.0497 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 266 THROUGH 326 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.9131 1.4632 13.6504 REMARK 3 T TENSOR REMARK 3 T11: 0.2441 T22: 0.1665 REMARK 3 T33: 0.1273 T12: -0.0570 REMARK 3 T13: -0.0206 T23: -0.0193 REMARK 3 L TENSOR REMARK 3 L11: 0.3119 L22: 0.9147 REMARK 3 L33: 0.4623 L12: -0.3528 REMARK 3 L13: -0.0281 L23: -0.3323 REMARK 3 S TENSOR REMARK 3 S11: 0.0186 S12: -0.0645 S13: 0.1151 REMARK 3 S21: 0.4781 S22: -0.0560 S23: -0.1611 REMARK 3 S31: -0.1743 S32: 0.1809 S33: -0.0739 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4OVQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000200032. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48974 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.50 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.30 REMARK 200 R MERGE FOR SHELL (I) : 0.87400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (33.12 MG/ML, 10 MM HEPES PH REMARK 280 7.5, 5 MM DTT, 1 MM D-GLUCURONATE); RESERVOIR (0.2M CALCIUM REMARK 280 ACETATE 0.1 M TRIS PH 7.0 20 %(W/V) PEG 3000); CRYOPROTECTION REMARK 280 (20% GLYCEROL, 80% RESERVOIR), VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.10450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.57699 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 44.80800 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 39.10450 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 22.57699 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 44.80800 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 39.10450 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 22.57699 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 44.80800 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 45.15399 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 89.61600 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 45.15399 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 89.61600 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 45.15399 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 89.61600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 535 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 568 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 SER A 9 REMARK 465 SER A 10 REMARK 465 GLY A 11 REMARK 465 VAL A 12 REMARK 465 ASP A 13 REMARK 465 LEU A 14 REMARK 465 GLY A 15 REMARK 465 THR A 16 REMARK 465 GLU A 17 REMARK 465 ASN A 18 REMARK 465 LEU A 19 REMARK 465 TYR A 20 REMARK 465 PHE A 21 REMARK 465 GLN A 22 REMARK 465 SER A 23 REMARK 465 MSE A 24 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 501 O HOH A 533 1.70 REMARK 500 O HOH A 607 O HOH A 756 1.90 REMARK 500 O HOH A 666 O HOH A 797 2.01 REMARK 500 O HOH A 559 O HOH A 594 2.01 REMARK 500 O HOH A 739 O HOH A 760 2.02 REMARK 500 O HOH A 741 O HOH A 800 2.02 REMARK 500 O HOH A 507 O HOH A 574 2.10 REMARK 500 O HOH A 601 O HOH A 617 2.10 REMARK 500 O HOH A 536 O HOH A 581 2.14 REMARK 500 O HOH A 503 O HOH A 525 2.15 REMARK 500 O HOH A 727 O HOH A 737 2.15 REMARK 500 O HOH A 712 O HOH A 745 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 501 O HOH A 504 3665 1.76 REMARK 500 O HOH A 505 O HOH A 538 3555 2.02 REMARK 500 O HOH A 511 O HOH A 511 3555 2.12 REMARK 500 O HOH A 522 O HOH A 531 2545 2.12 REMARK 500 O HOH A 504 O HOH A 533 2655 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 238 CB CYS A 238 SG -0.097 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 222 77.32 -153.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 810 DISTANCE = 7.36 ANGSTROMS REMARK 525 HOH A 818 DISTANCE = 6.35 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-510230 RELATED DB: TARGETTRACK DBREF 4OVQ A 25 326 UNP Q160Z9 Q160Z9_ROSDO 25 326 SEQADV 4OVQ MSE A 2 UNP Q160Z9 EXPRESSION TAG SEQADV 4OVQ HIS A 3 UNP Q160Z9 EXPRESSION TAG SEQADV 4OVQ HIS A 4 UNP Q160Z9 EXPRESSION TAG SEQADV 4OVQ HIS A 5 UNP Q160Z9 EXPRESSION TAG SEQADV 4OVQ HIS A 6 UNP Q160Z9 EXPRESSION TAG SEQADV 4OVQ HIS A 7 UNP Q160Z9 EXPRESSION TAG SEQADV 4OVQ HIS A 8 UNP Q160Z9 EXPRESSION TAG SEQADV 4OVQ SER A 9 UNP Q160Z9 EXPRESSION TAG SEQADV 4OVQ SER A 10 UNP Q160Z9 EXPRESSION TAG SEQADV 4OVQ GLY A 11 UNP Q160Z9 EXPRESSION TAG SEQADV 4OVQ VAL A 12 UNP Q160Z9 EXPRESSION TAG SEQADV 4OVQ ASP A 13 UNP Q160Z9 EXPRESSION TAG SEQADV 4OVQ LEU A 14 UNP Q160Z9 EXPRESSION TAG SEQADV 4OVQ GLY A 15 UNP Q160Z9 EXPRESSION TAG SEQADV 4OVQ THR A 16 UNP Q160Z9 EXPRESSION TAG SEQADV 4OVQ GLU A 17 UNP Q160Z9 EXPRESSION TAG SEQADV 4OVQ ASN A 18 UNP Q160Z9 EXPRESSION TAG SEQADV 4OVQ LEU A 19 UNP Q160Z9 EXPRESSION TAG SEQADV 4OVQ TYR A 20 UNP Q160Z9 EXPRESSION TAG SEQADV 4OVQ PHE A 21 UNP Q160Z9 EXPRESSION TAG SEQADV 4OVQ GLN A 22 UNP Q160Z9 EXPRESSION TAG SEQADV 4OVQ SER A 23 UNP Q160Z9 EXPRESSION TAG SEQADV 4OVQ MSE A 24 UNP Q160Z9 EXPRESSION TAG SEQRES 1 A 325 MSE HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 325 GLY THR GLU ASN LEU TYR PHE GLN SER MSE ASP ASN TRP SEQRES 3 A 325 ARG GLY TRP ASN ILE HIS VAL ASP GLY TYR PRO ASN THR SEQRES 4 A 325 VAL ALA MSE ASP LYS PHE ALA GLU LEU LEU ALA VAL LYS SEQRES 5 A 325 THR GLY GLY GLU TYR THR LEU GLN MSE PHE HIS GLY GLY SEQRES 6 A 325 THR LEU GLY SER GLN PRO ASP ALA ILE GLU GLN VAL ARG SEQRES 7 A 325 ALA GLY ALA LEU GLU ILE GLY ASN PHE ASN LEU GLY PRO SEQRES 8 A 325 ILE GLY PRO LEU VAL PRO ALA ALA ASN VAL VAL SER LEU SEQRES 9 A 325 PRO PHE ILE PHE LYS ASP VAL PRO HIS MSE PHE ARG VAL SEQRES 10 A 325 LEU ASP GLY GLU ALA GLY LYS ILE ILE ALA ALA GLY MSE SEQRES 11 A 325 ALA GLU LYS GLY ILE GLN PRO LEU ALA TRP TYR ASP ALA SEQRES 12 A 325 GLY ALA ARG SER PHE TYR ASN GLY GLU LYS PRO ILE ASN SEQRES 13 A 325 THR PRO ALA ASP VAL GLU GLY MSE LYS VAL ARG VAL MSE SEQRES 14 A 325 ASN ASN GLU LEU PHE THR GLY MSE ILE ALA GLU LEU GLY SEQRES 15 A 325 GLY ASN PRO SER PRO MSE ALA PHE ALA GLU VAL TYR GLN SEQRES 16 A 325 ALA LEU LYS THR GLY VAL VAL ASP GLY ALA GLU ASN ASN SEQRES 17 A 325 TRP PRO SER TYR GLU SER THR GLY HIS PHE GLU VAL ALA SEQRES 18 A 325 GLY PHE TYR SER LEU SER GLN HIS LEU ILE ILE PRO GLU SEQRES 19 A 325 CYS ILE CYS ILE ASN ILE GLY THR PHE ASN ALA LEU SER SEQRES 20 A 325 ASP GLU MSE LYS THR ALA VAL LEU GLU ALA ALA GLN GLU SEQRES 21 A 325 SER ALA LEU TYR GLN ARG ASP LEU TRP ASN LYS ARG GLU SEQRES 22 A 325 ALA ALA SER ARG ALA ALA VAL GLU ALA ALA GLY VAL VAL SEQRES 23 A 325 VAL ASN GLU ILE ALA ASP LYS ALA PRO PHE GLN ALA ALA SEQRES 24 A 325 MSE ALA PRO VAL TYR GLU ALA TYR PHE GLU ALA ASN PRO SEQRES 25 A 325 ASP LEU ARG PRO LEU VAL GLU LEU ILE GLN ALA THR GLU MODRES 4OVQ MSE A 43 MET MODIFIED RESIDUE MODRES 4OVQ MSE A 62 MET MODIFIED RESIDUE MODRES 4OVQ MSE A 115 MET MODIFIED RESIDUE MODRES 4OVQ MSE A 131 MET MODIFIED RESIDUE MODRES 4OVQ MSE A 165 MET MODIFIED RESIDUE MODRES 4OVQ MSE A 170 MET MODIFIED RESIDUE MODRES 4OVQ MSE A 178 MET MODIFIED RESIDUE MODRES 4OVQ MSE A 189 MET MODIFIED RESIDUE MODRES 4OVQ MSE A 251 MET MODIFIED RESIDUE MODRES 4OVQ MSE A 301 MET MODIFIED RESIDUE HET MSE A 43 17 HET MSE A 62 17 HET MSE A 115 17 HET MSE A 131 17 HET MSE A 165 17 HET MSE A 170 17 HET MSE A 178 17 HET MSE A 189 17 HET MSE A 251 17 HET MSE A 301 17 HET CL A 401 1 HET BDP A 402 13 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM BDP BETA-D-GLUCOPYRANURONIC ACID HETSYN BDP BETA-D-GLUCURONIC ACID; D-GLUCURONIC ACID; GLUCURONIC HETSYN 2 BDP ACID FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 2 CL CL 1- FORMUL 3 BDP C6 H10 O7 FORMUL 4 HOH *332(H2 O) HELIX 1 AA1 TYR A 37 THR A 54 1 18 HELIX 2 AA2 SER A 70 ALA A 80 1 11 HELIX 3 AA3 LEU A 90 GLY A 94 1 5 HELIX 4 AA4 ALA A 99 LEU A 105 5 7 HELIX 5 AA5 ASP A 111 ASP A 120 1 10 HELIX 6 AA6 GLY A 121 LYS A 134 1 14 HELIX 7 AA7 THR A 158 GLU A 163 5 6 HELIX 8 AA8 ASN A 172 LEU A 182 1 11 HELIX 9 AA9 ALA A 190 ALA A 192 5 3 HELIX 10 AB1 GLU A 193 THR A 200 1 8 HELIX 11 AB2 ASN A 209 THR A 216 1 8 HELIX 12 AB3 GLY A 217 ALA A 222 1 6 HELIX 13 AB4 ILE A 241 ALA A 246 1 6 HELIX 14 AB5 SER A 248 ALA A 284 1 37 HELIX 15 AB6 LYS A 294 ALA A 300 1 7 HELIX 16 AB7 MSE A 301 ASN A 312 1 12 HELIX 17 AB8 LEU A 315 ALA A 324 1 10 SHEET 1 AA1 5 THR A 59 PHE A 63 0 SHEET 2 AA1 5 ASN A 26 TRP A 30 1 N TRP A 27 O THR A 59 SHEET 3 AA1 5 ILE A 85 ASN A 89 1 O ASN A 87 N TRP A 30 SHEET 4 AA1 5 GLU A 235 ASN A 240 -1 O CYS A 238 N GLY A 86 SHEET 5 AA1 5 ILE A 136 TYR A 142 -1 N LEU A 139 O ILE A 237 SHEET 1 AA2 4 GLY A 205 ASN A 208 0 SHEET 2 AA2 4 ARG A 147 ASN A 151 -1 N TYR A 150 O ALA A 206 SHEET 3 AA2 4 PHE A 224 LEU A 231 -1 O LEU A 231 N ARG A 147 SHEET 4 AA2 4 VAL A 287 GLU A 290 1 O ASN A 289 N LEU A 227 SHEET 1 AA3 2 LYS A 166 VAL A 169 0 SHEET 2 AA3 2 ASN A 185 PRO A 188 1 O SER A 187 N VAL A 167 LINK C ALA A 42 N MSE A 43 1555 1555 1.33 LINK C MSE A 43 N ASP A 44 1555 1555 1.33 LINK C GLN A 61 N MSE A 62 1555 1555 1.33 LINK C MSE A 62 N PHE A 63 1555 1555 1.33 LINK C HIS A 114 N MSE A 115 1555 1555 1.33 LINK C MSE A 115 N PHE A 116 1555 1555 1.32 LINK C GLY A 130 N MSE A 131 1555 1555 1.32 LINK C MSE A 131 N ALA A 132 1555 1555 1.33 LINK C GLY A 164 N MSE A 165 1555 1555 1.33 LINK C MSE A 165 N LYS A 166 1555 1555 1.34 LINK C VAL A 169 N MSE A 170 1555 1555 1.33 LINK C MSE A 170 N ASN A 171 1555 1555 1.34 LINK C GLY A 177 N MSE A 178 1555 1555 1.32 LINK C MSE A 178 N ILE A 179 1555 1555 1.33 LINK C PRO A 188 N MSE A 189 1555 1555 1.33 LINK C MSE A 189 N ALA A 190 1555 1555 1.33 LINK C GLU A 250 N MSE A 251 1555 1555 1.33 LINK C MSE A 251 N LYS A 252 1555 1555 1.33 LINK C ALA A 300 N MSE A 301 1555 1555 1.33 LINK C MSE A 301 N ALA A 302 1555 1555 1.33 CRYST1 78.209 78.209 134.424 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012786 0.007382 0.000000 0.00000 SCALE2 0.000000 0.014764 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007439 0.00000