HEADER HYDROLASE 03-FEB-14 4OWP TITLE CRYSTAL STRUCTURE OF RPN11 IN A HETERODIMER COMPLEX WITH RPN8, TITLE 2 REPRESENTING THE ACTIVE PORTION OF THE PROTEASOME LID. COMPND MOL_ID: 1; COMPND 2 MOLECULE: 26S PROTEASOME REGULATORY SUBUNIT RPN8; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 26S PROTEASOME REGULATORY SUBUNIT RPN11; COMPND 7 CHAIN: B; COMPND 8 SYNONYM: PROTEIN MPR1; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: O5360,RPN8,YOR261C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 - ROSSETTA; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PETDUET; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 14 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 15 ORGANISM_TAXID: 559292; SOURCE 16 STRAIN: ATCC 204508 / S288C; SOURCE 17 GENE: MPR1,RPN11,YFR004W; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 20 EXPRESSION_SYSTEM_STRAIN: BL21 - ROSSETTA; SOURCE 21 EXPRESSION_SYSTEM_VECTOR: PLASMID; SOURCE 22 EXPRESSION_SYSTEM_PLASMID: PETDUET KEYWDS PROTEASOME, DEUBIQUITINATION, UBIQUITIN, METALLOPROTEASE, ZINC, MPN KEYWDS 2 DOMAIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.YU,W.MANSOUR,M.A.NAKASONE,M.H.GLICKMAN,H.DVIR REVDAT 5 27-DEC-23 4OWP 1 REMARK REVDAT 4 25-DEC-19 4OWP 1 REMARK REVDAT 3 18-DEC-19 4OWP 1 TITLE KEYWDS JRNL REVDAT 2 20-SEP-17 4OWP 1 REMARK REVDAT 1 05-AUG-15 4OWP 0 JRNL AUTH Z.YU,W.MANSOUR,M.A.NAKASONE,E.PICK,M.H.GLICKMAN,H.DVIR JRNL TITL CRYSTAL STRUCTURE OF RPN11 IN A HETERODIMER COMPLEX WITH JRNL TITL 2 RPN8, REPRESENTING THE ACTIVE PORTION OF THE PROTEASOME JRNL TITL 3 LID.IN PREPARATION. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 21532 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.180 REMARK 3 FREE R VALUE TEST SET COUNT : 1116 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2395 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2531 REMARK 3 BIN FREE R VALUE SET COUNT : 143 REMARK 3 BIN FREE R VALUE : 0.3345 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2676 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 127 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.270 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.11 REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4OWP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000200137. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JAN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 - 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-X REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC CONFOCAL MAX-FLUX? CU/CR REMARK 200 DW REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS HTC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21697 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 16.70 REMARK 200 R MERGE (I) : 0.13800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.4 REMARK 200 DATA REDUNDANCY IN SHELL : 9.90 REMARK 200 R MERGE FOR SHELL (I) : 0.81000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.720 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.5 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 5000, 5% TACSIMATE, 0.1 M REMARK 280 HEPES PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 99.82400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 35.19400 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 35.19400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 149.73600 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 35.19400 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 35.19400 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 49.91200 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 35.19400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 35.19400 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 149.73600 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 35.19400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.19400 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 49.91200 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 99.82400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE RPN11-RPN8 HETERODIMER IN THE ASSYMETERIC UNIT IS ALSO REMARK 300 THE MINIMAL ACTIVE ASSEMBLY REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 130 REMARK 465 LYS A 144 REMARK 465 ASP A 145 REMARK 465 ASP A 146 REMARK 465 GLY A 147 REMARK 465 THR A 148 REMARK 465 SER A 149 REMARK 465 ARG A 179 REMARK 465 ASP A 180 REMARK 465 GLN A 181 REMARK 465 ALA A 182 REMARK 465 ALA A 183 REMARK 465 GLY A 184 REMARK 465 GLY A 185 REMARK 465 LEU A 186 REMARK 465 MET B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 GLY B 0 REMARK 465 SER B 1 REMARK 465 GLU B 2 REMARK 465 ARG B 3 REMARK 465 LEU B 4 REMARK 465 GLN B 5 REMARK 465 ARG B 6 REMARK 465 LEU B 7 REMARK 465 MET B 8 REMARK 465 MET B 9 REMARK 465 ASN B 10 REMARK 465 SER B 11 REMARK 465 LYS B 12 REMARK 465 VAL B 13 REMARK 465 GLY B 14 REMARK 465 SER B 15 REMARK 465 ALA B 16 REMARK 465 ASP B 17 REMARK 465 THR B 18 REMARK 465 GLY B 19 REMARK 465 ARG B 20 REMARK 465 ASP B 21 REMARK 465 ASP B 22 REMARK 465 THR B 23 REMARK 465 GLY B 162 REMARK 465 ALA B 163 REMARK 465 LEU B 164 REMARK 465 ILE B 165 REMARK 465 ASN B 166 REMARK 465 ASN B 167 REMARK 465 LEU B 168 REMARK 465 GLU B 169 REMARK 465 PRO B 170 REMARK 465 ARG B 171 REMARK 465 GLN B 172 REMARK 465 THR B 173 REMARK 465 THR B 174 REMARK 465 SER B 175 REMARK 465 ASN B 176 REMARK 465 THR B 177 REMARK 465 GLY B 178 REMARK 465 LEU B 179 REMARK 465 LEU B 180 REMARK 465 ASN B 181 REMARK 465 LYS B 182 REMARK 465 ALA B 183 REMARK 465 ASN B 184 REMARK 465 ILE B 185 REMARK 465 GLN B 186 REMARK 465 ALA B 187 REMARK 465 LEU B 188 REMARK 465 ILE B 189 REMARK 465 HIS B 190 REMARK 465 GLY B 191 REMARK 465 LEU B 192 REMARK 465 ASN B 193 REMARK 465 GLN B 222 REMARK 465 SER B 223 REMARK 465 GLY B 224 REMARK 465 LEU B 225 REMARK 465 LYS B 226 REMARK 465 MET B 227 REMARK 465 TYR B 228 REMARK 465 ASP B 229 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 29 -122.86 62.03 REMARK 500 SER A 63 10.90 -67.09 REMARK 500 ASP A 69 98.03 -66.06 REMARK 500 ARG A 176 -167.49 -65.74 REMARK 500 ASP A 177 18.21 46.81 REMARK 500 ASP B 59 -156.66 -149.68 REMARK 500 THR B 76 26.11 -79.61 REMARK 500 ASN B 133 111.79 -160.16 REMARK 500 ASP B 160 95.74 -63.39 REMARK 500 GLU B 219 3.31 -67.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 109 NE2 REMARK 620 2 HIS B 111 NE2 101.4 REMARK 620 3 ASP B 122 OD2 98.9 113.9 REMARK 620 4 HOH B 401 O 108.9 108.0 123.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4O8X RELATED DB: PDB REMARK 900 SIMILAR TO THE 4O8X STRUCTURE, THOUGH SOLVED INDEPENDENTLY IN REMARK 900 APPROXIMATELY THE SAME TIME. REMARK 900 RELATED ID: 4O8Y RELATED DB: PDB REMARK 900 SIMILAR TO THE 4O8Y STRUCTURE, THOUGH SOLVED INDEPENDENTLY IN REMARK 900 APPROXIMATELY THE SAME TIME. DBREF 4OWP A 1 186 UNP Q08723 RPN8_YEAST 1 186 DBREF 4OWP B 2 229 UNP P43588 RPN11_YEAST 2 229 SEQADV 4OWP MET B -9 UNP P43588 EXPRESSION TAG SEQADV 4OWP HIS B -8 UNP P43588 EXPRESSION TAG SEQADV 4OWP HIS B -7 UNP P43588 EXPRESSION TAG SEQADV 4OWP HIS B -6 UNP P43588 EXPRESSION TAG SEQADV 4OWP HIS B -5 UNP P43588 EXPRESSION TAG SEQADV 4OWP HIS B -4 UNP P43588 EXPRESSION TAG SEQADV 4OWP HIS B -3 UNP P43588 EXPRESSION TAG SEQADV 4OWP GLY B -2 UNP P43588 EXPRESSION TAG SEQADV 4OWP SER B -1 UNP P43588 EXPRESSION TAG SEQADV 4OWP GLY B 0 UNP P43588 EXPRESSION TAG SEQADV 4OWP SER B 1 UNP P43588 EXPRESSION TAG SEQRES 1 A 186 MET SER LEU GLN HIS GLU LYS VAL THR ILE ALA PRO LEU SEQRES 2 A 186 VAL LEU LEU SER ALA LEU ASP HIS TYR GLU ARG THR GLN SEQRES 3 A 186 THR LYS GLU ASN LYS ARG CYS VAL GLY VAL ILE LEU GLY SEQRES 4 A 186 ASP ALA ASN SER SER THR ILE ARG VAL THR ASN SER PHE SEQRES 5 A 186 ALA LEU PRO PHE GLU GLU ASP GLU LYS ASN SER ASP VAL SEQRES 6 A 186 TRP PHE LEU ASP HIS ASN TYR ILE GLU ASN MET ASN GLU SEQRES 7 A 186 MET CYS LYS LYS ILE ASN ALA LYS GLU LYS LEU ILE GLY SEQRES 8 A 186 TRP TYR HIS SER GLY PRO LYS LEU ARG ALA SER ASP LEU SEQRES 9 A 186 LYS ILE ASN GLU LEU PHE LYS LYS TYR THR GLN ASN ASN SEQRES 10 A 186 PRO LEU LEU LEU ILE VAL ASP VAL LYS GLN GLN GLY VAL SEQRES 11 A 186 GLY LEU PRO THR ASP ALA TYR VAL ALA ILE GLU GLN VAL SEQRES 12 A 186 LYS ASP ASP GLY THR SER THR GLU LYS THR PHE LEU HIS SEQRES 13 A 186 LEU PRO CYS THR ILE GLU ALA GLU GLU ALA GLU GLU ILE SEQRES 14 A 186 GLY VAL GLU HIS LEU LEU ARG ASP VAL ARG ASP GLN ALA SEQRES 15 A 186 ALA GLY GLY LEU SEQRES 1 B 239 MET HIS HIS HIS HIS HIS HIS GLY SER GLY SER GLU ARG SEQRES 2 B 239 LEU GLN ARG LEU MET MET ASN SER LYS VAL GLY SER ALA SEQRES 3 B 239 ASP THR GLY ARG ASP ASP THR LYS GLU THR VAL TYR ILE SEQRES 4 B 239 SER SER ILE ALA LEU LEU LYS MET LEU LYS HIS GLY ARG SEQRES 5 B 239 ALA GLY VAL PRO MET GLU VAL MET GLY LEU MET LEU GLY SEQRES 6 B 239 GLU PHE VAL ASP ASP TYR THR VAL ASN VAL VAL ASP VAL SEQRES 7 B 239 PHE ALA MET PRO GLN SER GLY THR GLY VAL SER VAL GLU SEQRES 8 B 239 ALA VAL ASP ASP VAL PHE GLN ALA LYS MET MET ASP MET SEQRES 9 B 239 LEU LYS GLN THR GLY ARG ASP GLN MET VAL VAL GLY TRP SEQRES 10 B 239 TYR HIS SER HIS PRO GLY PHE GLY CYS TRP LEU SER SER SEQRES 11 B 239 VAL ASP VAL ASN THR GLN LYS SER PHE GLU GLN LEU ASN SEQRES 12 B 239 SER ARG ALA VAL ALA VAL VAL VAL ASP PRO ILE GLN SER SEQRES 13 B 239 VAL LYS GLY LYS VAL VAL ILE ASP ALA PHE ARG LEU ILE SEQRES 14 B 239 ASP THR GLY ALA LEU ILE ASN ASN LEU GLU PRO ARG GLN SEQRES 15 B 239 THR THR SER ASN THR GLY LEU LEU ASN LYS ALA ASN ILE SEQRES 16 B 239 GLN ALA LEU ILE HIS GLY LEU ASN ARG HIS TYR TYR SER SEQRES 17 B 239 LEU ASN ILE ASP TYR HIS LYS THR ALA LYS GLU THR LYS SEQRES 18 B 239 MET LEU MET ASN LEU HIS LYS GLU GLN TRP GLN SER GLY SEQRES 19 B 239 LEU LYS MET TYR ASP HET ZN B 301 1 HETNAM ZN ZINC ION FORMUL 3 ZN ZN 2+ FORMUL 4 HOH *127(H2 O) HELIX 1 AA1 ALA A 11 THR A 25 1 15 HELIX 2 AA2 ASP A 69 ASN A 84 1 16 HELIX 3 AA3 SER A 102 LYS A 112 1 11 HELIX 4 AA4 GLU A 164 LEU A 175 1 12 HELIX 5 AA5 SER B 31 VAL B 45 1 15 HELIX 6 AA6 SER B 79 VAL B 83 5 5 HELIX 7 AA7 ASP B 84 GLN B 97 1 14 HELIX 8 AA8 SER B 119 ASN B 133 1 15 HELIX 9 AA9 THR B 206 MET B 214 1 9 HELIX 10 AB1 ASN B 215 LEU B 216 5 2 HELIX 11 AB2 HIS B 217 TRP B 221 5 5 SHEET 1 AA1 8 GLU A 151 LEU A 157 0 SHEET 2 AA1 8 THR A 134 GLN A 142 -1 N VAL A 138 O LEU A 155 SHEET 3 AA1 8 LEU A 119 VAL A 123 -1 N ILE A 122 O ASP A 135 SHEET 4 AA1 8 LYS A 88 HIS A 94 1 N TRP A 92 O LEU A 121 SHEET 5 AA1 8 VAL A 34 ASP A 40 -1 N GLY A 39 O LYS A 88 SHEET 6 AA1 8 THR A 45 ALA A 53 -1 O ASN A 50 N LEU A 38 SHEET 7 AA1 8 LYS A 7 ILE A 10 1 N THR A 9 O VAL A 48 SHEET 8 AA1 8 CYS A 159 ILE A 161 1 O THR A 160 N ILE A 10 SHEET 1 AA2 2 PHE A 56 GLU A 58 0 SHEET 2 AA2 2 TRP A 66 LEU A 68 -1 O PHE A 67 N GLU A 57 SHEET 1 AA3 8 THR B 26 SER B 30 0 SHEET 2 AA3 8 THR B 62 ALA B 70 1 O VAL B 65 N TYR B 28 SHEET 3 AA3 8 MET B 50 ASP B 59 -1 N LEU B 54 O ASP B 67 SHEET 4 AA3 8 MET B 103 SER B 110 -1 O GLY B 106 N MET B 53 SHEET 5 AA3 8 VAL B 137 VAL B 141 1 O VAL B 139 N TRP B 107 SHEET 6 AA3 8 ILE B 153 LEU B 158 -1 O ASP B 154 N VAL B 140 SHEET 7 AA3 8 TYR B 196 HIS B 204 -1 O LEU B 199 N ALA B 155 SHEET 8 AA3 8 THR B 26 SER B 30 1 N ILE B 29 O ASP B 202 LINK NE2 HIS B 109 ZN ZN B 301 1555 1555 2.13 LINK NE2 HIS B 111 ZN ZN B 301 1555 1555 1.99 LINK OD2 ASP B 122 ZN ZN B 301 1555 1555 1.87 LINK ZN ZN B 301 O HOH B 401 1555 1555 1.89 CISPEP 1 GLY A 96 PRO A 97 0 10.44 CISPEP 2 LYS B 24 GLU B 25 0 -12.61 CISPEP 3 VAL B 45 PRO B 46 0 11.43 SITE 1 AC1 4 HIS B 109 HIS B 111 ASP B 122 HOH B 401 CRYST1 70.388 70.388 199.648 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014207 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014207 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005009 0.00000