HEADER HYDROLASE 05-FEB-14 4OXD TITLE STRUCTURE OF THE LDCB LD-CARBOXYPEPTIDASE REVEALS THE MOLECULAR BASIS TITLE 2 OF PEPTIDOGLYCAN RECOGNITION COMPND MOL_ID: 1; COMPND 2 MOLECULE: LDCB LD-CARBOXYPEPTIDASE; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 FRAGMENT: UNP RESIDUES 56-238; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: MUB-ALA-ZGL-LYS-DSG; COMPND 8 CHAIN: H SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE R6; SOURCE 3 ORGANISM_TAXID: 171101; SOURCE 4 STRAIN: R6; SOURCE 5 GENE: SPR0554; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: LACTOBACILLUS ACIDOPHILUS; SOURCE 13 ORGANISM_TAXID: 1579 KEYWDS LAS FAMILY, LD-CARBOXYPEPTIDASE, CELL WALL MODIFYING ENZYME, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.N.HOYLAND,C.ALDRIDGE,R.M.CLEVERLEY,K.SIDIQ,M.C.DUCHENE,R.A.DANIEL, AUTHOR 2 W.VOLLMER,R.J.LEWIS REVDAT 9 09-OCT-24 4OXD 1 REMARK REVDAT 8 10-APR-24 4OXD 1 COMPND SOURCE REMARK DBREF REVDAT 8 2 1 SEQRES LINK ATOM REVDAT 7 15-NOV-23 4OXD 1 HETSYN LINK ATOM REVDAT 6 29-JUL-20 4OXD 1 REMARK HETNAM LINK SITE REVDAT 5 01-JAN-20 4OXD 1 SOURCE KEYWDS JRNL REMARK REVDAT 5 2 1 CRYST1 REVDAT 4 07-JAN-15 4OXD 1 DBREF REVDAT 3 01-OCT-14 4OXD 1 JRNL REVDAT 2 16-JUL-14 4OXD 1 JRNL REVDAT 1 21-MAY-14 4OXD 0 JRNL AUTH C.N.HOYLAND,C.ALDRIDGE,R.M.CLEVERLEY,M.C.DUCHENE,G.MINASOV, JRNL AUTH 2 O.ONOPRIYENKO,K.SIDIQ,P.J.STOGIOS,W.F.ANDERSON,R.A.DANIEL, JRNL AUTH 3 A.SAVCHENKO,W.VOLLMER,R.J.LEWIS JRNL TITL STRUCTURE OF THE LDCB LD-CARBOXYPEPTIDASE REVEALS THE JRNL TITL 2 MOLECULAR BASIS OF PEPTIDOGLYCAN RECOGNITION. JRNL REF STRUCTURE V. 22 949 2014 JRNL REFN ISSN 0969-2126 JRNL PMID 24909784 JRNL DOI 10.1016/J.STR.2014.04.015 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 27113 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.276 REMARK 3 R VALUE (WORKING SET) : 0.273 REMARK 3 FREE R VALUE : 0.334 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1457 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1979 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.35 REMARK 3 BIN R VALUE (WORKING SET) : 0.3290 REMARK 3 BIN FREE R VALUE SET COUNT : 108 REMARK 3 BIN FREE R VALUE : 0.4560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7045 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 111 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.10000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.22000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.495 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.443 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 22.531 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.859 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.809 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7290 ; 0.005 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6506 ; 0.008 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9779 ; 0.842 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15047 ; 0.677 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 864 ; 4.794 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 378 ;32.416 ;24.841 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1192 ;13.447 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ; 8.276 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 979 ; 0.048 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8292 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1688 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3503 ; 0.952 ; 4.420 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3502 ; 0.952 ; 4.420 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4352 ; 1.702 ; 6.616 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4353 ; 1.702 ; 6.616 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3783 ; 0.798 ; 4.484 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3783 ; 0.798 ; 4.484 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5427 ; 1.312 ; 6.699 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 8195 ; 3.649 ;35.226 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 8196 ; 3.649 ;35.226 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4OXD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000200184. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.916 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47327 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 47.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM CHLORIDE, 0.1 M HEPES REMARK 280 PH 8, 20% PEG 6000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 172.97700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.27450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 172.97700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.27450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 ZN ZN A 303 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 THERE IS A NON-STANDARD LINKAGE IN CHAIN H BETWEEN LYS 4 AND DSC 5 REMARK 400 THROUGH NZ ATOM OF LYS AND C ATOM OF DSG. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 ASP A 238 REMARK 465 GLY B -4 REMARK 465 GLY B 166 REMARK 465 LYS B 195 REMARK 465 GLU B 196 REMARK 465 LYS B 197 REMARK 465 ASP B 238 REMARK 465 GLY C 52 REMARK 465 SER C 53 REMARK 465 HIS C 54 REMARK 465 MET C 55 REMARK 465 GLN C 130 REMARK 465 ASP C 131 REMARK 465 TYR C 132 REMARK 465 VAL C 133 REMARK 465 ASN C 134 REMARK 465 GLN C 135 REMARK 465 ASP C 136 REMARK 465 GLY C 137 REMARK 465 LYS C 138 REMARK 465 GLU C 139 REMARK 465 ALA C 140 REMARK 465 ALA C 141 REMARK 465 ASP C 142 REMARK 465 ARG C 143 REMARK 465 TYR C 144 REMARK 465 ASP C 238 REMARK 465 GLY D -4 REMARK 465 SER D -3 REMARK 465 TYR D 132 REMARK 465 VAL D 133 REMARK 465 ASN D 134 REMARK 465 GLN D 135 REMARK 465 ASP D 136 REMARK 465 GLY D 137 REMARK 465 LYS D 138 REMARK 465 GLU D 139 REMARK 465 ALA D 140 REMARK 465 ALA D 141 REMARK 465 ASP D 142 REMARK 465 ARG D 143 REMARK 465 TYR D 144 REMARK 465 ASP D 238 REMARK 465 GLY E -4 REMARK 465 SER E -3 REMARK 465 TYR E 132 REMARK 465 VAL E 133 REMARK 465 ASN E 134 REMARK 465 GLN E 135 REMARK 465 ASP E 136 REMARK 465 GLY E 137 REMARK 465 LYS E 138 REMARK 465 GLU E 139 REMARK 465 ASP E 167 REMARK 465 LEU E 168 REMARK 465 VAL E 169 REMARK 465 THR E 170 REMARK 465 GLU E 171 REMARK 465 ASP E 238 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 138 CG CD CE NZ REMARK 470 LYS B 138 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 204 N1 ZGL H 3 1.99 REMARK 500 N ALA A 146 O DSG H 5 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ZGL H 3 C - N - CA ANGL. DEV. = -29.8 DEGREES REMARK 500 ZGL H 3 CA - C - N ANGL. DEV. = 19.5 DEGREES REMARK 500 DSG H 5 CB - CA - C ANGL. DEV. = -12.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A -2 100.85 -45.26 REMARK 500 TYR A 86 100.28 -54.00 REMARK 500 THR A 164 -34.54 64.12 REMARK 500 ASP A 165 175.51 77.01 REMARK 500 LEU A 168 -61.75 65.34 REMARK 500 THR B 164 38.17 -161.20 REMARK 500 LEU C 128 43.82 -85.45 REMARK 500 MET D -1 94.21 68.80 REMARK 500 ASP D 165 -82.92 -105.05 REMARK 500 ASP D 167 -43.04 -169.50 REMARK 500 LEU D 168 -57.49 81.45 REMARK 500 ASP E 165 29.19 -142.14 REMARK 500 ZGL H 3 -101.36 -135.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA H 2 ZGL H 3 98.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ZGL H 3 10.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A -2 NE2 REMARK 620 2 GLU A 56 OE1 127.4 REMARK 620 3 GLU A 56 OE2 100.8 67.1 REMARK 620 4 HIS D 79 NE2 85.8 139.2 85.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 62 OD1 REMARK 620 2 ASP A 62 OD1 0.0 REMARK 620 3 ASP A 85 OD1 98.9 98.9 REMARK 620 4 ASP A 85 OD2 125.5 125.5 55.4 REMARK 620 5 ASP A 85 OD1 98.9 98.9 0.0 55.4 REMARK 620 6 ASP A 85 OD2 125.5 125.5 55.4 0.0 55.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 79 NE2 REMARK 620 2 GLU A 232 OE1 60.4 REMARK 620 3 HIS D -2 ND1 94.8 72.7 REMARK 620 4 GLU D 56 OE1 93.6 70.5 2.2 REMARK 620 5 GLU D 56 OE2 96.3 71.2 3.1 2.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 114 OD1 REMARK 620 2 HIS A 115 ND1 79.7 REMARK 620 3 HIS B 181 ND1 113.5 87.9 REMARK 620 4 ASP B 184 OD1 119.6 115.8 124.5 REMARK 620 5 ASP B 184 OD2 72.1 82.0 167.4 55.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 153 NE2 REMARK 620 2 ASP A 160 OD1 107.0 REMARK 620 3 HIS A 207 ND1 110.2 107.6 REMARK 620 4 LYS H 4 O 68.2 123.6 127.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 306 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 181 ND1 REMARK 620 2 ASP A 184 OD2 111.9 REMARK 620 3 ASP B 114 OD1 65.6 69.2 REMARK 620 4 ASP B 114 OD2 62.6 70.8 3.0 REMARK 620 5 HIS B 115 ND1 66.2 70.9 2.6 4.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B -2 NE2 REMARK 620 2 GLU B 56 OE1 127.1 REMARK 620 3 GLU B 56 OE2 81.3 56.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 305 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 62 OD1 REMARK 620 2 ASP B 62 OD2 54.5 REMARK 620 3 ASP B 85 OD1 81.5 87.2 REMARK 620 4 ASP B 85 OD2 137.0 103.0 59.4 REMARK 620 5 ASP E 62 OD1 128.4 91.1 139.9 82.2 REMARK 620 6 ASP E 62 OD2 73.4 77.1 154.9 143.1 60.9 REMARK 620 7 ASP E 85 OD2 103.2 157.2 84.3 90.7 108.9 102.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 304 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 79 NE2 REMARK 620 2 HOH B 411 O 109.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 153 NE2 REMARK 620 2 ASP B 160 OD1 129.2 REMARK 620 3 ASP B 160 OD2 92.9 56.9 REMARK 620 4 HIS B 207 ND1 117.9 96.6 148.8 REMARK 620 5 HOH B 402 O 82.4 122.2 78.0 108.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 79 NE2 REMARK 620 2 GLU C 232 OE1 83.2 REMARK 620 3 GLU E 56 OE2 88.6 155.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 304 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 115 NE2 REMARK 620 2 HIS D 181 NE2 110.9 REMARK 620 3 HOH D 407 O 89.8 85.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 153 NE2 REMARK 620 2 ASP C 160 OD1 104.1 REMARK 620 3 ASP C 160 OD2 85.9 53.6 REMARK 620 4 HIS C 207 ND1 115.4 105.3 154.6 REMARK 620 5 HOH C 409 O 126.7 103.1 74.9 100.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 181 NE2 REMARK 620 2 HIS D 115 NE2 75.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH C 405 O REMARK 620 2 HIS E 79 NE2 106.4 REMARK 620 3 HOH E 414 O 78.2 88.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 153 NE2 REMARK 620 2 ASP D 160 OD1 94.1 REMARK 620 3 ASP D 160 OD2 87.7 56.7 REMARK 620 4 HIS D 207 ND1 112.6 99.3 150.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS E 115 NE2 REMARK 620 2 ASP E 131 OD1 46.6 REMARK 620 3 HIS E 181 NE2 59.2 100.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS E 153 NE2 REMARK 620 2 ASP E 160 OD1 118.6 REMARK 620 3 HIS E 207 ND1 127.8 102.5 REMARK 620 4 HOH E 401 O 118.6 99.7 81.2 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4OX5 RELATED DB: PDB REMARK 900 4OX5 CONTAINS THE APO PROTEIN, WITHOUT LIGAND. REMARK 900 RELATED ID: 4OX3 RELATED DB: PDB DBREF 4OXD A 56 238 UNP Q8DQQ1 Q8DQQ1_STRR6 56 238 DBREF 4OXD B 56 238 UNP Q8DQQ1 Q8DQQ1_STRR6 56 238 DBREF 4OXD C 56 238 UNP Q8DQQ1 Q8DQQ1_STRR6 56 238 DBREF 4OXD D 56 238 UNP Q8DQQ1 Q8DQQ1_STRR6 56 238 DBREF 4OXD E 56 238 UNP Q8DQQ1 Q8DQQ1_STRR6 56 238 DBREF 4OXD H 2 5 PDB 4OXD 4OXD 2 5 SEQADV 4OXD GLY A -4 UNP Q8DQQ1 EXPRESSION TAG SEQADV 4OXD SER A -3 UNP Q8DQQ1 EXPRESSION TAG SEQADV 4OXD HIS A -2 UNP Q8DQQ1 EXPRESSION TAG SEQADV 4OXD MET A -1 UNP Q8DQQ1 EXPRESSION TAG SEQADV 4OXD GLY B -4 UNP Q8DQQ1 EXPRESSION TAG SEQADV 4OXD SER B -3 UNP Q8DQQ1 EXPRESSION TAG SEQADV 4OXD HIS B -2 UNP Q8DQQ1 EXPRESSION TAG SEQADV 4OXD MET B -1 UNP Q8DQQ1 EXPRESSION TAG SEQADV 4OXD GLY C 52 UNP Q8DQQ1 EXPRESSION TAG SEQADV 4OXD SER C 53 UNP Q8DQQ1 EXPRESSION TAG SEQADV 4OXD HIS C 54 UNP Q8DQQ1 EXPRESSION TAG SEQADV 4OXD MET C 55 UNP Q8DQQ1 EXPRESSION TAG SEQADV 4OXD GLY D -4 UNP Q8DQQ1 EXPRESSION TAG SEQADV 4OXD SER D -3 UNP Q8DQQ1 EXPRESSION TAG SEQADV 4OXD HIS D -2 UNP Q8DQQ1 EXPRESSION TAG SEQADV 4OXD MET D -1 UNP Q8DQQ1 EXPRESSION TAG SEQADV 4OXD GLY E -4 UNP Q8DQQ1 EXPRESSION TAG SEQADV 4OXD SER E -3 UNP Q8DQQ1 EXPRESSION TAG SEQADV 4OXD HIS E -2 UNP Q8DQQ1 EXPRESSION TAG SEQADV 4OXD MET E -1 UNP Q8DQQ1 EXPRESSION TAG SEQRES 1 A 187 GLY SER HIS MET GLU VAL VAL ASN LYS GLY ASP TYR TYR SEQRES 2 A 187 SER ILE GLN GLY LYS TYR ASP GLU ILE ILE VAL ALA ASN SEQRES 3 A 187 LYS HIS TYR PRO LEU SER LYS ASP TYR ASN PRO GLY GLU SEQRES 4 A 187 ASN PRO THR ALA LYS ALA GLU LEU VAL LYS LEU ILE LYS SEQRES 5 A 187 ALA MET GLN GLU ALA GLY PHE PRO ILE SER ASP HIS TYR SEQRES 6 A 187 SER GLY PHE ARG SER TYR GLU THR GLN THR LYS LEU TYR SEQRES 7 A 187 GLN ASP TYR VAL ASN GLN ASP GLY LYS GLU ALA ALA ASP SEQRES 8 A 187 ARG TYR SER ALA ARG PRO GLY TYR SER GLU HIS GLN THR SEQRES 9 A 187 GLY LEU ALA PHE ASP VAL ILE GLY THR ASP GLY ASP LEU SEQRES 10 A 187 VAL THR GLU GLU LYS ALA ALA GLN TRP LEU LEU ASP HIS SEQRES 11 A 187 ALA ALA ASP TYR GLY PHE VAL VAL ARG TYR LEU LYS GLY SEQRES 12 A 187 LYS GLU LYS GLU THR GLY TYR MET ALA GLU GLU TRP HIS SEQRES 13 A 187 LEU ARG TYR VAL GLY LYS GLU ALA LYS GLU ILE ALA GLU SEQRES 14 A 187 SER GLY LEU SER LEU GLU GLU TYR TYR GLY PHE GLU GLY SEQRES 15 A 187 GLY ASP TYR VAL ASP SEQRES 1 B 187 GLY SER HIS MET GLU VAL VAL ASN LYS GLY ASP TYR TYR SEQRES 2 B 187 SER ILE GLN GLY LYS TYR ASP GLU ILE ILE VAL ALA ASN SEQRES 3 B 187 LYS HIS TYR PRO LEU SER LYS ASP TYR ASN PRO GLY GLU SEQRES 4 B 187 ASN PRO THR ALA LYS ALA GLU LEU VAL LYS LEU ILE LYS SEQRES 5 B 187 ALA MET GLN GLU ALA GLY PHE PRO ILE SER ASP HIS TYR SEQRES 6 B 187 SER GLY PHE ARG SER TYR GLU THR GLN THR LYS LEU TYR SEQRES 7 B 187 GLN ASP TYR VAL ASN GLN ASP GLY LYS GLU ALA ALA ASP SEQRES 8 B 187 ARG TYR SER ALA ARG PRO GLY TYR SER GLU HIS GLN THR SEQRES 9 B 187 GLY LEU ALA PHE ASP VAL ILE GLY THR ASP GLY ASP LEU SEQRES 10 B 187 VAL THR GLU GLU LYS ALA ALA GLN TRP LEU LEU ASP HIS SEQRES 11 B 187 ALA ALA ASP TYR GLY PHE VAL VAL ARG TYR LEU LYS GLY SEQRES 12 B 187 LYS GLU LYS GLU THR GLY TYR MET ALA GLU GLU TRP HIS SEQRES 13 B 187 LEU ARG TYR VAL GLY LYS GLU ALA LYS GLU ILE ALA GLU SEQRES 14 B 187 SER GLY LEU SER LEU GLU GLU TYR TYR GLY PHE GLU GLY SEQRES 15 B 187 GLY ASP TYR VAL ASP SEQRES 1 C 187 GLY SER HIS MET GLU VAL VAL ASN LYS GLY ASP TYR TYR SEQRES 2 C 187 SER ILE GLN GLY LYS TYR ASP GLU ILE ILE VAL ALA ASN SEQRES 3 C 187 LYS HIS TYR PRO LEU SER LYS ASP TYR ASN PRO GLY GLU SEQRES 4 C 187 ASN PRO THR ALA LYS ALA GLU LEU VAL LYS LEU ILE LYS SEQRES 5 C 187 ALA MET GLN GLU ALA GLY PHE PRO ILE SER ASP HIS TYR SEQRES 6 C 187 SER GLY PHE ARG SER TYR GLU THR GLN THR LYS LEU TYR SEQRES 7 C 187 GLN ASP TYR VAL ASN GLN ASP GLY LYS GLU ALA ALA ASP SEQRES 8 C 187 ARG TYR SER ALA ARG PRO GLY TYR SER GLU HIS GLN THR SEQRES 9 C 187 GLY LEU ALA PHE ASP VAL ILE GLY THR ASP GLY ASP LEU SEQRES 10 C 187 VAL THR GLU GLU LYS ALA ALA GLN TRP LEU LEU ASP HIS SEQRES 11 C 187 ALA ALA ASP TYR GLY PHE VAL VAL ARG TYR LEU LYS GLY SEQRES 12 C 187 LYS GLU LYS GLU THR GLY TYR MET ALA GLU GLU TRP HIS SEQRES 13 C 187 LEU ARG TYR VAL GLY LYS GLU ALA LYS GLU ILE ALA GLU SEQRES 14 C 187 SER GLY LEU SER LEU GLU GLU TYR TYR GLY PHE GLU GLY SEQRES 15 C 187 GLY ASP TYR VAL ASP SEQRES 1 D 187 GLY SER HIS MET GLU VAL VAL ASN LYS GLY ASP TYR TYR SEQRES 2 D 187 SER ILE GLN GLY LYS TYR ASP GLU ILE ILE VAL ALA ASN SEQRES 3 D 187 LYS HIS TYR PRO LEU SER LYS ASP TYR ASN PRO GLY GLU SEQRES 4 D 187 ASN PRO THR ALA LYS ALA GLU LEU VAL LYS LEU ILE LYS SEQRES 5 D 187 ALA MET GLN GLU ALA GLY PHE PRO ILE SER ASP HIS TYR SEQRES 6 D 187 SER GLY PHE ARG SER TYR GLU THR GLN THR LYS LEU TYR SEQRES 7 D 187 GLN ASP TYR VAL ASN GLN ASP GLY LYS GLU ALA ALA ASP SEQRES 8 D 187 ARG TYR SER ALA ARG PRO GLY TYR SER GLU HIS GLN THR SEQRES 9 D 187 GLY LEU ALA PHE ASP VAL ILE GLY THR ASP GLY ASP LEU SEQRES 10 D 187 VAL THR GLU GLU LYS ALA ALA GLN TRP LEU LEU ASP HIS SEQRES 11 D 187 ALA ALA ASP TYR GLY PHE VAL VAL ARG TYR LEU LYS GLY SEQRES 12 D 187 LYS GLU LYS GLU THR GLY TYR MET ALA GLU GLU TRP HIS SEQRES 13 D 187 LEU ARG TYR VAL GLY LYS GLU ALA LYS GLU ILE ALA GLU SEQRES 14 D 187 SER GLY LEU SER LEU GLU GLU TYR TYR GLY PHE GLU GLY SEQRES 15 D 187 GLY ASP TYR VAL ASP SEQRES 1 E 187 GLY SER HIS MET GLU VAL VAL ASN LYS GLY ASP TYR TYR SEQRES 2 E 187 SER ILE GLN GLY LYS TYR ASP GLU ILE ILE VAL ALA ASN SEQRES 3 E 187 LYS HIS TYR PRO LEU SER LYS ASP TYR ASN PRO GLY GLU SEQRES 4 E 187 ASN PRO THR ALA LYS ALA GLU LEU VAL LYS LEU ILE LYS SEQRES 5 E 187 ALA MET GLN GLU ALA GLY PHE PRO ILE SER ASP HIS TYR SEQRES 6 E 187 SER GLY PHE ARG SER TYR GLU THR GLN THR LYS LEU TYR SEQRES 7 E 187 GLN ASP TYR VAL ASN GLN ASP GLY LYS GLU ALA ALA ASP SEQRES 8 E 187 ARG TYR SER ALA ARG PRO GLY TYR SER GLU HIS GLN THR SEQRES 9 E 187 GLY LEU ALA PHE ASP VAL ILE GLY THR ASP GLY ASP LEU SEQRES 10 E 187 VAL THR GLU GLU LYS ALA ALA GLN TRP LEU LEU ASP HIS SEQRES 11 E 187 ALA ALA ASP TYR GLY PHE VAL VAL ARG TYR LEU LYS GLY SEQRES 12 E 187 LYS GLU LYS GLU THR GLY TYR MET ALA GLU GLU TRP HIS SEQRES 13 E 187 LEU ARG TYR VAL GLY LYS GLU ALA LYS GLU ILE ALA GLU SEQRES 14 E 187 SER GLY LEU SER LEU GLU GLU TYR TYR GLY PHE GLU GLY SEQRES 15 E 187 GLY ASP TYR VAL ASP SEQRES 1 H 4 ALA ZGL LYS DSG HET ZGL H 3 9 HET DSG H 5 8 HET ZN A 301 1 HET ZN A 302 1 HET ZN A 303 1 HET MG A 304 1 HET ZN B 301 1 HET ZN B 302 1 HET ZN B 303 1 HET ZN B 304 1 HET ZN B 305 1 HET ZN B 306 1 HET LYS B 307 10 HET ZN C 301 1 HET ZN C 302 1 HET ZN C 303 1 HET ZN C 304 1 HET CL C 305 1 HET ZN D 301 1 HET ZN D 302 1 HET CL D 303 1 HET ZN E 301 1 HET ZN E 302 1 HET ZN E 303 1 HET MUB H 101 19 HETNAM ZGL D-ALPHA-GLUTAMINE HETNAM DSG D-ASPARAGINE HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM LYS LYSINE HETNAM CL CHLORIDE ION HETNAM MUB N-ACETYL-ALPHA-MURAMIC ACID HETSYN ZGL ISO-D-GLUTAMINE HETSYN MUB N-ACETYL-MURAMIC ACID; N-ACETYLMURAMIC ACID FORMUL 6 ZGL C5 H10 N2 O3 FORMUL 6 DSG C4 H8 N2 O3 FORMUL 7 ZN 18(ZN 2+) FORMUL 10 MG MG 2+ FORMUL 17 LYS C6 H15 N2 O2 1+ FORMUL 22 CL 2(CL 1-) FORMUL 29 MUB C11 H19 N O8 FORMUL 30 HOH *111(H2 O) HELIX 1 AA1 ASN A 91 GLY A 109 1 19 HELIX 2 AA2 SER A 121 GLY A 137 1 17 HELIX 3 AA3 SER A 151 GLY A 156 5 6 HELIX 4 AA4 LEU A 168 ALA A 182 1 15 HELIX 5 AA5 ALA A 183 TYR A 185 5 3 HELIX 6 AA6 LYS A 195 GLY A 200 1 6 HELIX 7 AA7 GLU A 214 GLY A 222 1 9 HELIX 8 AA8 SER A 224 GLY A 230 1 7 HELIX 9 AA9 ASN B 91 ALA B 108 1 18 HELIX 10 AB1 SER B 121 GLY B 137 1 17 HELIX 11 AB2 GLY B 137 SER B 145 1 9 HELIX 12 AB3 SER B 151 THR B 155 5 5 HELIX 13 AB4 LEU B 168 ALA B 182 1 15 HELIX 14 AB5 ALA B 183 TYR B 185 5 3 HELIX 15 AB6 GLU B 214 GLY B 222 1 9 HELIX 16 AB7 SER B 224 GLY B 230 1 7 HELIX 17 AB8 ASN C 91 ALA C 108 1 18 HELIX 18 AB9 SER C 121 LEU C 128 1 8 HELIX 19 AC1 SER C 151 THR C 155 5 5 HELIX 20 AC2 ASP C 167 ALA C 182 1 16 HELIX 21 AC3 ALA C 183 TYR C 185 5 3 HELIX 22 AC4 LYS C 195 GLY C 200 1 6 HELIX 23 AC5 GLU C 214 GLY C 222 1 9 HELIX 24 AC6 SER C 224 GLY C 230 1 7 HELIX 25 AC7 ASN D 91 ALA D 108 1 18 HELIX 26 AC8 SER D 121 ASP D 131 1 11 HELIX 27 AC9 SER D 151 GLY D 156 5 6 HELIX 28 AD1 LEU D 168 ALA D 182 1 15 HELIX 29 AD2 ALA D 183 TYR D 185 5 3 HELIX 30 AD3 LYS D 195 GLY D 200 1 6 HELIX 31 AD4 GLU D 214 GLY D 222 1 9 HELIX 32 AD5 SER D 224 GLY D 230 1 7 HELIX 33 AD6 ASN E 91 ALA E 108 1 18 HELIX 34 AD7 SER E 121 GLN E 130 1 10 HELIX 35 AD8 ALA E 141 SER E 145 1 5 HELIX 36 AD9 SER E 151 THR E 155 5 5 HELIX 37 AE1 LYS E 173 ALA E 182 1 10 HELIX 38 AE2 ALA E 183 TYR E 185 5 3 HELIX 39 AE3 LYS E 195 GLY E 200 1 6 HELIX 40 AE4 GLU E 214 GLY E 222 1 9 HELIX 41 AE5 SER E 224 GLY E 230 1 7 SHEET 1 AA1 3 VAL A 58 ASN A 59 0 SHEET 2 AA1 3 TYR A 64 GLN A 67 -1 O SER A 65 N VAL A 58 SHEET 3 AA1 3 GLU A 72 VAL A 75 -1 O ILE A 73 N ILE A 66 SHEET 1 AA2 4 TYR A 116 SER A 117 0 SHEET 2 AA2 4 ALA A 158 VAL A 161 -1 O ASP A 160 N SER A 117 SHEET 3 AA2 4 HIS A 207 TYR A 210 -1 O LEU A 208 N PHE A 159 SHEET 4 AA2 4 PHE A 187 VAL A 189 -1 N VAL A 188 O ARG A 209 SHEET 1 AA3 3 VAL B 58 ASN B 59 0 SHEET 2 AA3 3 TYR B 64 GLN B 67 -1 O SER B 65 N VAL B 58 SHEET 3 AA3 3 GLU B 72 VAL B 75 -1 O ILE B 73 N ILE B 66 SHEET 1 AA4 3 ALA B 158 ASP B 160 0 SHEET 2 AA4 3 HIS B 207 TYR B 210 -1 O LEU B 208 N PHE B 159 SHEET 3 AA4 3 PHE B 187 VAL B 189 -1 N VAL B 188 O ARG B 209 SHEET 1 AA5 3 VAL C 58 ASN C 59 0 SHEET 2 AA5 3 TYR C 64 GLN C 67 -1 O SER C 65 N VAL C 58 SHEET 3 AA5 3 GLU C 72 VAL C 75 -1 O VAL C 75 N TYR C 64 SHEET 1 AA6 4 ILE C 112 SER C 117 0 SHEET 2 AA6 4 ALA C 158 GLY C 163 -1 O ILE C 162 N SER C 113 SHEET 3 AA6 4 HIS C 207 TYR C 210 -1 O LEU C 208 N PHE C 159 SHEET 4 AA6 4 PHE C 187 VAL C 189 -1 N VAL C 188 O ARG C 209 SHEET 1 AA7 3 VAL D 58 ASN D 59 0 SHEET 2 AA7 3 TYR D 64 GLN D 67 -1 O SER D 65 N VAL D 58 SHEET 3 AA7 3 GLU D 72 VAL D 75 -1 O ILE D 73 N ILE D 66 SHEET 1 AA8 4 ILE D 112 SER D 117 0 SHEET 2 AA8 4 ALA D 158 GLY D 163 -1 O ILE D 162 N SER D 113 SHEET 3 AA8 4 HIS D 207 TYR D 210 -1 O LEU D 208 N PHE D 159 SHEET 4 AA8 4 PHE D 187 VAL D 189 -1 N VAL D 188 O ARG D 209 SHEET 1 AA9 3 VAL E 58 ASN E 59 0 SHEET 2 AA9 3 TYR E 64 GLN E 67 -1 O SER E 65 N VAL E 58 SHEET 3 AA9 3 GLU E 72 VAL E 75 -1 O VAL E 75 N TYR E 64 SHEET 1 AB1 3 ALA E 158 ASP E 160 0 SHEET 2 AB1 3 HIS E 207 TYR E 210 -1 O LEU E 208 N PHE E 159 SHEET 3 AB1 3 PHE E 187 VAL E 189 -1 N VAL E 188 O ARG E 209 LINK C ALA H 2 N ZGL H 3 1555 1555 1.35 LINK N ALA H 2 C10 MUB H 101 1555 1555 1.36 LINK C ZGL H 3 N LYS H 4 1555 1555 1.34 LINK NZ LYS H 4 C DSG H 5 1555 1555 1.33 LINK NE2 HIS A -2 ZN ZN A 302 1555 1555 2.08 LINK OE1 GLU A 56 ZN ZN A 302 1555 1555 1.99 LINK OE2 GLU A 56 ZN ZN A 302 1555 1555 1.99 LINK OD1 ASP A 62 ZN ZN A 303 1555 1555 1.99 LINK OD1 ASP A 62 ZN ZN A 303 1555 2556 1.98 LINK NE2 HIS A 79 ZN ZN D 302 1555 2555 2.56 LINK OD1 ASP A 85 ZN ZN A 303 1555 1555 2.59 LINK OD2 ASP A 85 ZN ZN A 303 1555 1555 1.99 LINK OD1 ASP A 85 ZN ZN A 303 1555 2556 2.62 LINK OD2 ASP A 85 ZN ZN A 303 1555 2556 2.04 LINK OD1 ASP A 114 ZN ZN B 302 1555 1555 2.48 LINK ND1 HIS A 115 ZN ZN B 302 1555 1555 2.67 LINK OG1 THR A 124 MG MG A 304 1555 1555 2.61 LINK NE2 HIS A 153 ZN ZN A 301 1555 1555 2.08 LINK OD1 ASP A 160 ZN ZN A 301 1555 1555 1.99 LINK ND1 HIS A 181 ZN ZN B 306 1555 1565 2.41 LINK OD2 ASP A 184 ZN ZN B 306 1555 1565 2.10 LINK ND1 HIS A 207 ZN ZN A 301 1555 1555 2.09 LINK OE1 GLU A 232 ZN ZN D 302 1555 2555 2.60 LINK ZN ZN A 301 O LYS H 4 1555 1555 1.98 LINK ZN ZN A 302 NE2 HIS D 79 2555 1555 2.67 LINK NE2 HIS B -2 ZN ZN B 303 1555 1555 2.08 LINK OE1 GLU B 56 ZN ZN B 303 1555 1555 2.00 LINK OE2 GLU B 56 ZN ZN B 303 1555 1555 2.54 LINK OD1 ASP B 62 ZN ZN B 305 1555 1555 1.99 LINK OD2 ASP B 62 ZN ZN B 305 1555 1555 2.64 LINK NE2 HIS B 79 ZN ZN B 304 1555 1555 2.08 LINK OD1 ASP B 85 ZN ZN B 305 1555 1555 2.00 LINK OD2 ASP B 85 ZN ZN B 305 1555 1555 2.37 LINK OD1 ASP B 114 ZN ZN B 306 1555 1555 2.00 LINK OD2 ASP B 114 ZN ZN B 306 1555 1555 2.00 LINK ND1 HIS B 115 ZN ZN B 306 1555 1555 2.08 LINK NE2 HIS B 153 ZN ZN B 301 1555 1555 2.09 LINK OD1 ASP B 160 ZN ZN B 301 1555 1555 1.99 LINK OD2 ASP B 160 ZN ZN B 301 1555 1555 2.50 LINK ND1 HIS B 181 ZN ZN B 302 1555 1555 2.08 LINK OD1 ASP B 184 ZN ZN B 302 1555 1555 2.01 LINK OD2 ASP B 184 ZN ZN B 302 1555 1555 2.59 LINK ND1 HIS B 207 ZN ZN B 301 1555 1555 2.08 LINK ZN ZN B 301 O HOH B 402 1555 1555 1.90 LINK ZN ZN B 304 O HOH B 411 1555 1555 1.71 LINK ZN ZN B 305 OD1 ASP E 62 1555 1555 2.29 LINK ZN ZN B 305 OD2 ASP E 62 1555 1555 2.00 LINK ZN ZN B 305 OD2 ASP E 85 1555 1555 1.99 LINK NE2 HIS C 79 ZN ZN C 302 1555 1555 2.07 LINK NE2 HIS C 115 ZN ZN C 304 1555 1555 2.09 LINK NE2 HIS C 153 ZN ZN C 301 1555 1555 2.08 LINK OD1 ASP C 160 ZN ZN C 301 1555 1555 1.99 LINK OD2 ASP C 160 ZN ZN C 301 1555 1555 2.67 LINK NE2 HIS C 181 ZN ZN C 303 1555 1555 2.08 LINK ND1 HIS C 207 ZN ZN C 301 1555 1555 2.08 LINK OE1 GLU C 232 ZN ZN C 302 1555 1555 2.00 LINK ZN ZN C 301 O HOH C 409 1555 1555 1.86 LINK ZN ZN C 302 OE2 GLU E 56 1555 1555 2.29 LINK ZN ZN C 303 NE2 HIS D 115 1565 1555 2.46 LINK ZN ZN C 304 NE2 HIS D 181 1555 1555 2.08 LINK ZN ZN C 304 O HOH D 407 1555 1555 1.96 LINK O HOH C 405 ZN ZN E 302 1555 1555 2.53 LINK ND1 HIS D -2 ZN ZN D 302 1555 1555 2.08 LINK OE1 GLU D 56 ZN ZN D 302 1555 1555 2.62 LINK OE2 GLU D 56 ZN ZN D 302 1555 1555 2.00 LINK NE2 HIS D 153 ZN ZN D 301 1555 1555 2.09 LINK OD1 ASP D 160 ZN ZN D 301 1555 1555 1.99 LINK OD2 ASP D 160 ZN ZN D 301 1555 1555 2.52 LINK ND1 HIS D 207 ZN ZN D 301 1555 1555 2.09 LINK NE2 HIS E 79 ZN ZN E 302 1555 1555 2.08 LINK NE2 HIS E 115 ZN ZN E 303 1555 1555 2.08 LINK OD1 ASP E 131 ZN ZN E 303 1555 4446 2.46 LINK NE2 HIS E 153 ZN ZN E 301 1555 1555 2.09 LINK OD1 ASP E 160 ZN ZN E 301 1555 1555 1.99 LINK NE2 HIS E 181 ZN ZN E 303 1555 4456 2.55 LINK ND1 HIS E 207 ZN ZN E 301 1555 1555 2.09 LINK ZN ZN E 301 O HOH E 401 1555 1555 2.02 LINK ZN ZN E 302 O HOH E 414 1555 1555 2.22 CISPEP 1 ASP A 165 GLY A 166 0 0.34 CRYST1 345.954 42.549 79.318 90.00 93.07 90.00 C 1 2 1 20 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.002891 0.000000 0.000155 0.00000 SCALE2 0.000000 0.023502 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012626 0.00000