HEADER HYDROLASE 05-FEB-14 4OXP TITLE X-RAY CRYSTAL STRUCTURE OF THE S1 AND 5'-SENSOR DOMAINS OF RNASE E TITLE 2 FROM CAULOBACTER CRESCENTUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBONUCLEASE E; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: S1 AND 5'-SENSOR DOMAINS (UNP RESIDUES 1-270); COMPND 5 SYNONYM: RNASE E; COMPND 6 EC: 3.1.26.12; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAULOBACTER CRESCENTUS; SOURCE 3 ORGANISM_TAXID: 190650; SOURCE 4 STRAIN: ATCC 19089 / CB15; SOURCE 5 GENE: RNE, CC_1877; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS RNASE E, ENDORIBONUCLEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.E.VOSS,B.F.L.LUISI,S.W.HARDWICK REVDAT 3 27-DEC-23 4OXP 1 SOURCE JRNL REMARK REVDAT 2 10-DEC-14 4OXP 1 JRNL REVDAT 1 03-DEC-14 4OXP 0 JRNL AUTH J.E.VOSS,B.F.LUISI,S.W.HARDWICK JRNL TITL MOLECULAR RECOGNITION OF RHLB AND RNASE D IN THE CAULOBACTER JRNL TITL 2 CRESCENTUS RNA DEGRADOSOME. JRNL REF NUCLEIC ACIDS RES. V. 42 13294 2014 JRNL REFN ESSN 1362-4962 JRNL PMID 25389270 JRNL DOI 10.1093/NAR/GKU1134 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 17099 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 928 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1272 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1488 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 101 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.35000 REMARK 3 B22 (A**2) : -0.35000 REMARK 3 B33 (A**2) : 0.69000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.178 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.169 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.135 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.248 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1510 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2050 ; 2.310 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 198 ; 8.683 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 64 ;35.417 ;23.906 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 238 ;19.880 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;23.201 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 238 ; 0.214 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1144 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 798 ; 2.917 ; 3.038 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 994 ; 4.413 ; 4.520 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 712 ; 3.735 ; 3.091 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2411 ;12.549 ;26.528 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 36 A 270 REMARK 3 ORIGIN FOR THE GROUP (A): -4.0690 11.8190 -21.4842 REMARK 3 T TENSOR REMARK 3 T11: 0.1950 T22: 0.0803 REMARK 3 T33: 0.2033 T12: -0.0401 REMARK 3 T13: -0.1285 T23: 0.0240 REMARK 3 L TENSOR REMARK 3 L11: 1.5336 L22: 2.9568 REMARK 3 L33: 2.5125 L12: -0.4916 REMARK 3 L13: -0.1976 L23: -0.7350 REMARK 3 S TENSOR REMARK 3 S11: -0.0089 S12: -0.0465 S13: -0.0871 REMARK 3 S21: 0.2720 S22: -0.1275 S23: -0.4049 REMARK 3 S31: -0.1316 S32: 0.4409 S33: 0.1364 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4OXP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000200191. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-SEP-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9536 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18069 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 48.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.5, 10% (V/V) ETHANOL, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.77500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 31.26500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 31.26500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 116.66250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 31.26500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 31.26500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 38.88750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 31.26500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.26500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 116.66250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 31.26500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.26500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 38.88750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 77.77500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 LYS A 4 REMARK 465 MET A 5 REMARK 465 LEU A 6 REMARK 465 ILE A 7 REMARK 465 ASP A 8 REMARK 465 ALA A 9 REMARK 465 ALA A 10 REMARK 465 HIS A 11 REMARK 465 ALA A 12 REMARK 465 GLU A 13 REMARK 465 GLU A 14 REMARK 465 THR A 15 REMARK 465 ARG A 16 REMARK 465 VAL A 17 REMARK 465 VAL A 18 REMARK 465 VAL A 19 REMARK 465 VAL A 20 REMARK 465 ASP A 21 REMARK 465 GLY A 22 REMARK 465 THR A 23 REMARK 465 ARG A 24 REMARK 465 VAL A 25 REMARK 465 GLU A 26 REMARK 465 GLU A 27 REMARK 465 PHE A 28 REMARK 465 ASP A 29 REMARK 465 PHE A 30 REMARK 465 GLU A 31 REMARK 465 SER A 32 REMARK 465 GLN A 33 REMARK 465 THR A 34 REMARK 465 ARG A 35 REMARK 465 SER A 94 REMARK 465 GLY A 95 REMARK 465 ASP A 96 REMARK 465 ASP A 97 REMARK 465 GLU A 98 REMARK 465 ASP A 99 REMARK 465 ASP A 100 REMARK 465 THR A 101 REMARK 465 PRO A 102 REMARK 465 ILE A 103 REMARK 465 SER A 104 REMARK 465 ARG A 105 REMARK 465 ARG A 106 REMARK 465 ALA A 107 REMARK 465 SER A 108 REMARK 465 GLY A 109 REMARK 465 GLY A 110 REMARK 465 ASP A 111 REMARK 465 ASP A 112 REMARK 465 GLU A 113 REMARK 465 ASP A 114 REMARK 465 ASP A 115 REMARK 465 VAL A 116 REMARK 465 ASN A 117 REMARK 465 GLY A 118 REMARK 465 GLY A 119 REMARK 465 ASP A 120 REMARK 465 ARG A 121 REMARK 465 ALA A 122 REMARK 465 VAL A 123 REMARK 465 ASP A 124 REMARK 465 ASP A 125 REMARK 465 ASP A 126 REMARK 465 ASP A 127 REMARK 465 ASP A 128 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 39 NE CZ NH1 NH2 REMARK 470 LYS A 46 CE NZ REMARK 470 ARG A 91 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 129 CG OD1 OD2 REMARK 470 VAL A 130 CG1 CG2 REMARK 470 GLU A 132 CG CD OE1 OE2 REMARK 470 GLU A 133 CG CD OE1 OE2 REMARK 470 LEU A 134 CG CD1 CD2 REMARK 470 ARG A 136 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 137 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 140 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 143 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 146 CE NZ REMARK 470 ARG A 152 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 163 CE NZ REMARK 470 ARG A 166 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 182 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 192 CZ NH1 NH2 REMARK 470 ARG A 198 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 199 CD CE NZ REMARK 470 ILE A 200 CG1 CG2 CD1 REMARK 470 VAL A 203 CG1 CG2 REMARK 470 THR A 204 OG1 CG2 REMARK 470 ARG A 206 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 207 CG CD CE NZ REMARK 470 LYS A 210 CG CD CE NZ REMARK 470 SER A 211 OG REMARK 470 GLN A 214 CG CD OE1 NE2 REMARK 470 LYS A 232 CG CD CE NZ REMARK 470 LYS A 235 CG CD CE NZ REMARK 470 GLU A 237 CG CD OE1 OE2 REMARK 470 ILE A 238 CG1 CG2 CD1 REMARK 470 LYS A 239 CG CD CE NZ REMARK 470 ARG A 240 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 51 O HOH A 601 2.03 REMARK 500 NH1 ARG A 49 O HOH A 602 2.05 REMARK 500 O ASP A 85 O HOH A 666 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 613 O HOH A 624 8554 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN A 189 CB ASN A 189 CG -0.160 REMARK 500 ALA A 261 CA ALA A 261 C -0.161 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 49 NE - CZ - NH1 ANGL. DEV. = -5.0 DEGREES REMARK 500 LEU A 69 CB - CG - CD2 ANGL. DEV. = 13.8 DEGREES REMARK 500 VAL A 150 CG1 - CB - CG2 ANGL. DEV. = 10.0 DEGREES REMARK 500 MET A 157 CG - SD - CE ANGL. DEV. = -11.3 DEGREES REMARK 500 VAL A 159 CG1 - CB - CG2 ANGL. DEV. = 12.5 DEGREES REMARK 500 PRO A 262 C - N - CA ANGL. DEV. = -25.4 DEGREES REMARK 500 PRO A 262 C - N - CD ANGL. DEV. = 16.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 88 36.36 -75.84 REMARK 500 LEU A 89 -34.98 -170.30 REMARK 500 ASP A 92 57.09 -27.77 REMARK 500 VAL A 130 10.31 -66.66 REMARK 500 ARG A 154 -8.39 77.11 REMARK 500 ALA A 191 88.62 -69.03 REMARK 500 LYS A 199 41.95 -72.83 REMARK 500 THR A 201 -76.20 -55.74 REMARK 500 ALA A 202 105.02 -49.01 REMARK 500 GLN A 220 -99.73 35.89 REMARK 500 LYS A 232 44.23 -88.61 REMARK 500 THR A 234 149.96 -36.35 REMARK 500 ALA A 261 -124.27 61.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 219 GLN A 220 144.08 REMARK 500 ILE A 260 ALA A 261 147.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 673 DISTANCE = 8.32 ANGSTROMS REMARK 525 HOH A 674 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH A 675 DISTANCE = 7.85 ANGSTROMS REMARK 525 HOH A 701 DISTANCE = 6.23 ANGSTROMS DBREF 4OXP A 1 270 UNP Q9A749 Q9A749_CAUCR 1 270 SEQADV 4OXP MET A -19 UNP Q9A749 EXPRESSION TAG SEQADV 4OXP GLY A -18 UNP Q9A749 EXPRESSION TAG SEQADV 4OXP SER A -17 UNP Q9A749 EXPRESSION TAG SEQADV 4OXP SER A -16 UNP Q9A749 EXPRESSION TAG SEQADV 4OXP HIS A -15 UNP Q9A749 EXPRESSION TAG SEQADV 4OXP HIS A -14 UNP Q9A749 EXPRESSION TAG SEQADV 4OXP HIS A -13 UNP Q9A749 EXPRESSION TAG SEQADV 4OXP HIS A -12 UNP Q9A749 EXPRESSION TAG SEQADV 4OXP HIS A -11 UNP Q9A749 EXPRESSION TAG SEQADV 4OXP HIS A -10 UNP Q9A749 EXPRESSION TAG SEQADV 4OXP SER A -9 UNP Q9A749 EXPRESSION TAG SEQADV 4OXP SER A -8 UNP Q9A749 EXPRESSION TAG SEQADV 4OXP GLY A -7 UNP Q9A749 EXPRESSION TAG SEQADV 4OXP LEU A -6 UNP Q9A749 EXPRESSION TAG SEQADV 4OXP VAL A -5 UNP Q9A749 EXPRESSION TAG SEQADV 4OXP PRO A -4 UNP Q9A749 EXPRESSION TAG SEQADV 4OXP ARG A -3 UNP Q9A749 EXPRESSION TAG SEQADV 4OXP GLY A -2 UNP Q9A749 EXPRESSION TAG SEQADV 4OXP SER A -1 UNP Q9A749 EXPRESSION TAG SEQADV 4OXP HIS A 0 UNP Q9A749 EXPRESSION TAG SEQADV 4OXP VAL A 172 UNP Q9A749 ALA 172 ENGINEERED MUTATION SEQRES 1 A 290 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 290 LEU VAL PRO ARG GLY SER HIS MET SER LYS LYS MET LEU SEQRES 3 A 290 ILE ASP ALA ALA HIS ALA GLU GLU THR ARG VAL VAL VAL SEQRES 4 A 290 VAL ASP GLY THR ARG VAL GLU GLU PHE ASP PHE GLU SER SEQRES 5 A 290 GLN THR ARG LYS GLN LEU ARG GLY ASN ILE TYR LEU ALA SEQRES 6 A 290 LYS VAL THR ARG VAL GLU PRO SER LEU GLN ALA ALA PHE SEQRES 7 A 290 ILE GLU TYR GLY GLY ASN ARG HIS GLY PHE LEU ALA PHE SEQRES 8 A 290 ASN GLU ILE HIS PRO ASP TYR TYR GLN ILE PRO VAL ALA SEQRES 9 A 290 ASP ARG GLU ALA LEU MET ARG ASP ASP SER GLY ASP ASP SEQRES 10 A 290 GLU ASP ASP THR PRO ILE SER ARG ARG ALA SER GLY GLY SEQRES 11 A 290 ASP ASP GLU ASP ASP VAL ASN GLY GLY ASP ARG ALA VAL SEQRES 12 A 290 ASP ASP ASP ASP ASP ASP VAL GLU GLU GLU LEU ALA ARG SEQRES 13 A 290 ARG LYS ARG ARG LEU MET ARG LYS TYR LYS ILE GLN GLU SEQRES 14 A 290 VAL ILE ARG ARG ARG GLN ILE MET LEU VAL GLN VAL VAL SEQRES 15 A 290 LYS GLU GLU ARG GLY ASN LYS GLY ALA VAL LEU THR THR SEQRES 16 A 290 TYR LEU SER LEU ALA GLY ARG TYR GLY VAL LEU MET PRO SEQRES 17 A 290 ASN THR ALA ARG GLY GLY GLY ILE SER ARG LYS ILE THR SEQRES 18 A 290 ALA VAL THR ASP ARG LYS ARG LEU LYS SER VAL VAL GLN SEQRES 19 A 290 SER LEU ASP VAL PRO GLN GLY MET GLY LEU ILE VAL ARG SEQRES 20 A 290 THR ALA GLY ALA LYS ARG THR LYS ALA GLU ILE LYS ARG SEQRES 21 A 290 ASP TYR GLU TYR LEU LEU ARG LEU TRP GLU ASN ILE ARG SEQRES 22 A 290 GLU ASN THR LEU HIS SER ILE ALA PRO ALA LEU ILE TYR SEQRES 23 A 290 GLU GLU GLU ASP FORMUL 2 HOH *101(H2 O) HELIX 1 AA1 ASN A 72 ILE A 74 5 3 HELIX 2 AA2 HIS A 75 TYR A 79 5 5 HELIX 3 AA3 PRO A 82 GLU A 87 1 6 HELIX 4 AA4 GLU A 131 TYR A 145 1 15 HELIX 5 AA5 LYS A 146 ILE A 151 1 6 HELIX 6 AA6 ALA A 202 LEU A 216 1 15 HELIX 7 AA7 THR A 228 ALA A 231 5 4 HELIX 8 AA8 ALA A 236 HIS A 258 1 23 SHEET 1 AA1 7 ALA A 263 TYR A 266 0 SHEET 2 AA1 7 ILE A 42 GLU A 51 -1 N ILE A 42 O TYR A 266 SHEET 3 AA1 7 ILE A 156 LYS A 163 -1 O MET A 157 N ALA A 45 SHEET 4 AA1 7 VAL A 172 THR A 174 -1 O VAL A 172 N VAL A 162 SHEET 5 AA1 7 GLY A 67 ALA A 70 1 N PHE A 68 O LEU A 173 SHEET 6 AA1 7 ALA A 56 GLU A 60 -1 N ALA A 57 O LEU A 69 SHEET 7 AA1 7 ILE A 42 GLU A 51 -1 N GLU A 51 O ALA A 56 SHEET 1 AA2 4 LEU A 179 ALA A 180 0 SHEET 2 AA2 4 GLY A 184 MET A 187 -1 O LEU A 186 N LEU A 179 SHEET 3 AA2 4 GLY A 223 VAL A 226 -1 O GLY A 223 N MET A 187 SHEET 4 AA2 4 GLY A 195 ILE A 196 1 N GLY A 195 O VAL A 226 CRYST1 62.530 62.530 155.550 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015992 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015992 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006429 0.00000