data_4OY5 # _entry.id 4OY5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4OY5 pdb_00004oy5 10.2210/pdb4oy5/pdb WWPDB D_1000200236 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-03-04 2 'Structure model' 1 1 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Data collection' 3 2 'Structure model' 'Database references' 4 2 'Structure model' 'Derived calculations' 5 2 'Structure model' 'Source and taxonomy' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' diffrn_source 5 2 'Structure model' pdbx_entity_src_syn 6 2 'Structure model' pdbx_struct_oper_list 7 2 'Structure model' pdbx_validate_close_contact 8 2 'Structure model' pdbx_validate_symm_contact 9 2 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 4 2 'Structure model' '_pdbx_entity_src_syn.pdbx_alt_source_flag' 5 2 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 6 2 'Structure model' '_struct_conn.pdbx_dist_value' 7 2 'Structure model' '_struct_conn.pdbx_ptnr2_label_alt_id' 8 2 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 9 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 10 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 11 2 'Structure model' '_struct_conn.ptnr1_label_comp_id' 12 2 'Structure model' '_struct_conn.ptnr1_label_seq_id' 13 2 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 14 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 15 2 'Structure model' '_struct_conn.ptnr2_label_atom_id' 16 2 'Structure model' '_struct_conn.ptnr2_label_comp_id' 17 2 'Structure model' '_struct_conn.ptnr2_label_seq_id' 18 2 'Structure model' '_struct_conn.ptnr2_symmetry' # _database_PDB_caveat.id 1 _database_PDB_caveat.text 'For conformer B, the C-N peptide bond distance between PRO8 and HYP9 is 1.65 angstrom' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr . _pdbx_database_status.entry_id 4OY5 _pdbx_database_status.recvd_initial_deposition_date 2014-02-10 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs . _pdbx_database_status.methods_development_category . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Suzuki, H.' 1 'Mahapatra, D.' 2 'Steel, P.J.' 3 'Dyer, J.' 4 'Dobson, R.C.J.' 5 'Gerrard, J.A.' 6 'Valery, C.' 7 # _citation.abstract . _citation.abstract_id_CAS . _citation.book_id_ISBN . _citation.book_publisher . _citation.book_publisher_city . _citation.book_title . _citation.coordinate_linkage . _citation.country ? _citation.database_id_Medline . _citation.details . _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full . _citation.journal_issue . _citation.journal_volume . _citation.language . _citation.page_first . _citation.page_last . _citation.title ;Sub-angstrom structure of the collagen model peptide (GPO)10 shows a hydrated triple helix with pitch variation and two proline ring conformations ; _citation.year . _citation.database_id_CSD . _citation.pdbx_database_id_DOI . _citation.pdbx_database_id_PubMed . _citation.unpublished_flag . # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Suzuki, H.' 1 ? primary 'Mahapatra, D.' 2 ? primary 'Steel, P.J.' 3 ? primary 'Dyer, J.' 4 ? primary 'Dobson, R.C.J.' 5 ? primary 'Gerrard, J.A.' 6 ? primary 'Valery, C.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn Collagen 2690.828 1 ? ? ? ? 2 water nat water 18.015 52 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'GP(HYP)GP(HYP)GP(HYP)GP(HYP)GP(HYP)GP(HYP)GP(HYP)GP(HYP)GP(HYP)GP(HYP)' _entity_poly.pdbx_seq_one_letter_code_can GPPGPPGPPGPPGPPGPPGPPGPPGPPGPP _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 HYP n 1 4 GLY n 1 5 PRO n 1 6 HYP n 1 7 GLY n 1 8 PRO n 1 9 HYP n 1 10 GLY n 1 11 PRO n 1 12 HYP n 1 13 GLY n 1 14 PRO n 1 15 HYP n 1 16 GLY n 1 17 PRO n 1 18 HYP n 1 19 GLY n 1 20 PRO n 1 21 HYP n 1 22 GLY n 1 23 PRO n 1 24 HYP n 1 25 GLY n 1 26 PRO n 1 27 HYP n 1 28 GLY n 1 29 PRO n 1 30 HYP n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 30 _pdbx_entity_src_syn.organism_scientific mammalian _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 40674 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 HYP 'L-peptide linking' n 4-HYDROXYPROLINE HYDROXYPROLINE 'C5 H9 N O3' 131.130 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 PRO 2 2 2 PRO PRO A . n A 1 3 HYP 3 3 3 HYP HYP A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 PRO 5 5 5 PRO PRO A . n A 1 6 HYP 6 6 6 HYP HYP A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 HYP 9 9 9 HYP HYP A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 PRO 11 11 11 PRO PRO A . n A 1 12 HYP 12 12 12 HYP HYP A . n A 1 13 GLY 13 13 13 GLY GLY A . n A 1 14 PRO 14 14 14 PRO PRO A . n A 1 15 HYP 15 15 15 HYP HYP A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 PRO 17 17 17 PRO PRO A . n A 1 18 HYP 18 18 18 HYP HYP A . n A 1 19 GLY 19 19 19 GLY GLY A . n A 1 20 PRO 20 20 20 PRO PRO A . n A 1 21 HYP 21 21 21 HYP HYP A . n A 1 22 GLY 22 22 ? ? ? A . n A 1 23 PRO 23 23 ? ? ? A . n A 1 24 HYP 24 24 ? ? ? A . n A 1 25 GLY 25 25 ? ? ? A . n A 1 26 PRO 26 26 ? ? ? A . n A 1 27 HYP 27 27 ? ? ? A . n A 1 28 GLY 28 28 ? ? ? A . n A 1 29 PRO 29 29 ? ? ? A . n A 1 30 HYP 30 30 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 101 15 HOH HOH A . B 2 HOH 2 102 6 HOH HOH A . B 2 HOH 3 103 29 HOH HOH A . B 2 HOH 4 104 19 HOH HOH A . B 2 HOH 5 105 14 HOH HOH A . B 2 HOH 6 106 7 HOH HOH A . B 2 HOH 7 107 30 HOH HOH A . B 2 HOH 8 108 27 HOH HOH A . B 2 HOH 9 109 25 HOH HOH A . B 2 HOH 10 110 16 HOH HOH A . B 2 HOH 11 111 9 HOH HOH A . B 2 HOH 12 112 33 HOH HOH A . B 2 HOH 13 113 1 HOH HOH A . B 2 HOH 14 114 3 HOH HOH A . B 2 HOH 15 115 5 HOH HOH A . B 2 HOH 16 116 8 HOH HOH A . B 2 HOH 17 117 4 HOH HOH A . B 2 HOH 18 118 23 HOH HOH A . B 2 HOH 19 119 18 HOH HOH A . B 2 HOH 20 120 13 HOH HOH A . B 2 HOH 21 121 40 HOH HOH A . B 2 HOH 22 122 10 HOH HOH A . B 2 HOH 23 123 26 HOH HOH A . B 2 HOH 24 124 17 HOH HOH A . B 2 HOH 25 125 12 HOH HOH A . B 2 HOH 26 126 49 HOH HOH A . B 2 HOH 27 127 11 HOH HOH A . B 2 HOH 28 128 38 HOH HOH A . B 2 HOH 29 129 32 HOH HOH A . B 2 HOH 30 130 28 HOH HOH A . B 2 HOH 31 131 45 HOH HOH A . B 2 HOH 32 132 20 HOH HOH A . B 2 HOH 33 133 36 HOH HOH A . B 2 HOH 34 134 42 HOH HOH A . B 2 HOH 35 135 22 HOH HOH A . B 2 HOH 36 136 51 HOH HOH A . B 2 HOH 37 137 34 HOH HOH A . B 2 HOH 38 138 50 HOH HOH A . B 2 HOH 39 139 46 HOH HOH A . B 2 HOH 40 140 44 HOH HOH A . B 2 HOH 41 141 21 HOH HOH A . B 2 HOH 42 142 52 HOH HOH A . B 2 HOH 43 143 37 HOH HOH A . B 2 HOH 44 144 43 HOH HOH A . B 2 HOH 45 145 24 HOH HOH A . B 2 HOH 46 146 35 HOH HOH A . B 2 HOH 47 147 39 HOH HOH A . B 2 HOH 48 148 31 HOH HOH A . B 2 HOH 49 149 2 HOH HOH A . B 2 HOH 50 150 48 HOH HOH A . B 2 HOH 51 151 47 HOH HOH A . B 2 HOH 52 152 41 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement . . . . . . . . . . . REFMAC . . . 5.7.0029 1 ? phasing . . . . . . . . . . . SHELXDE . . . 2013/1 2 # _cell.entry_id 4OY5 _cell.length_a 13.860 _cell.length_b 26.150 _cell.length_c 19.880 _cell.angle_alpha 90.00 _cell.angle_beta 105.43 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4OY5 _symmetry.cell_setting . _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M . # _exptl.absorpt_coefficient_mu . _exptl.absorpt_correction_T_max . _exptl.absorpt_correction_T_min . _exptl.absorpt_correction_type . _exptl.absorpt_process_details . _exptl.entry_id 4OY5 _exptl.crystals_number . _exptl.details . _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details . # _exptl_crystal.colour . _exptl_crystal.density_diffrn . _exptl_crystal.density_Matthews 1.84 _exptl_crystal.density_method . _exptl_crystal.density_percent_sol 33.09 _exptl_crystal.description . _exptl_crystal.F_000 . _exptl_crystal.id 1 _exptl_crystal.preparation . _exptl_crystal.size_max . _exptl_crystal.size_mid . _exptl_crystal.size_min . _exptl_crystal.size_rad . _exptl_crystal.colour_lustre . _exptl_crystal.colour_modifier . _exptl_crystal.colour_primary . _exptl_crystal.density_meas . _exptl_crystal.density_meas_esd . _exptl_crystal.density_meas_gt . _exptl_crystal.density_meas_lt . _exptl_crystal.density_meas_temp . _exptl_crystal.density_meas_temp_esd . _exptl_crystal.density_meas_temp_gt . _exptl_crystal.density_meas_temp_lt . _exptl_crystal.pdbx_crystal_image_url . _exptl_crystal.pdbx_crystal_image_format . _exptl_crystal.pdbx_mosaicity . _exptl_crystal.pdbx_mosaicity_esd . # _exptl_crystal_grow.apparatus . _exptl_crystal_grow.atmosphere . _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details . _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref . _exptl_crystal_grow.pH . _exptl_crystal_grow.pressure . _exptl_crystal_grow.pressure_esd . _exptl_crystal_grow.seeding . _exptl_crystal_grow.seeding_ref . _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details . _exptl_crystal_grow.temp_esd . _exptl_crystal_grow.time . _exptl_crystal_grow.pdbx_details '22% PEG400, 5% acetic acid' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.ambient_environment . _diffrn.ambient_temp 100 _diffrn.ambient_temp_details . _diffrn.ambient_temp_esd . _diffrn.crystal_id 1 _diffrn.crystal_support . _diffrn.crystal_treatment . _diffrn.details . _diffrn.id 1 _diffrn.ambient_pressure . _diffrn.ambient_pressure_esd . _diffrn.ambient_pressure_gt . _diffrn.ambient_pressure_lt . _diffrn.ambient_temp_gt . _diffrn.ambient_temp_lt . # _diffrn_detector.details . _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 210r' _diffrn_detector.area_resol_mean . _diffrn_detector.dtime . _diffrn_detector.pdbx_frames_total . _diffrn_detector.pdbx_collection_time_total . _diffrn_detector.pdbx_collection_date 2013-04-13 # _diffrn_radiation.collimation . _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge . _diffrn_radiation.inhomogeneity . _diffrn_radiation.monochromator . _diffrn_radiation.polarisn_norm . _diffrn_radiation.polarisn_ratio . _diffrn_radiation.probe . _diffrn_radiation.type . _diffrn_radiation.xray_symbol . _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l . _diffrn_radiation.pdbx_wavelength_list . _diffrn_radiation.pdbx_wavelength . _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer . _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.7293 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current . _diffrn_source.details . _diffrn_source.diffrn_id 1 _diffrn_source.power . _diffrn_source.size . _diffrn_source.source SYNCHROTRON _diffrn_source.target . _diffrn_source.type 'AUSTRALIAN SYNCHROTRON BEAMLINE MX1' _diffrn_source.voltage . _diffrn_source.take-off_angle . _diffrn_source.pdbx_wavelength_list 0.7293 _diffrn_source.pdbx_wavelength . _diffrn_source.pdbx_synchrotron_beamline MX1 _diffrn_source.pdbx_synchrotron_site 'Australian Synchrotron' # _reflns.B_iso_Wilson_estimate . _reflns.entry_id 4OY5 _reflns.data_reduction_details . _reflns.data_reduction_method . _reflns.d_resolution_high 0.89 _reflns.d_resolution_low 19.19 _reflns.details . _reflns.limit_h_max . _reflns.limit_h_min . _reflns.limit_k_max . _reflns.limit_k_min . _reflns.limit_l_max . _reflns.limit_l_min . _reflns.number_all . _reflns.number_obs 10270 _reflns.observed_criterion . _reflns.observed_criterion_F_max . _reflns.observed_criterion_F_min . _reflns.observed_criterion_I_max . _reflns.observed_criterion_I_min . _reflns.observed_criterion_sigma_F . _reflns.observed_criterion_sigma_I . _reflns.percent_possible_obs 96.5 _reflns.R_free_details . _reflns.Rmerge_F_all . _reflns.Rmerge_F_obs . _reflns.Friedel_coverage . _reflns.number_gt . _reflns.threshold_expression . _reflns.pdbx_redundancy 7.3 _reflns.pdbx_Rmerge_I_obs . _reflns.pdbx_Rmerge_I_all . _reflns.pdbx_Rsym_value . _reflns.pdbx_netI_over_av_sigmaI . _reflns.pdbx_netI_over_sigmaI 54.7 _reflns.pdbx_res_netI_over_av_sigmaI_2 . _reflns.pdbx_res_netI_over_sigmaI_2 . _reflns.pdbx_chi_squared . _reflns.pdbx_scaling_rejects . _reflns.pdbx_d_res_high_opt . _reflns.pdbx_d_res_low_opt . _reflns.pdbx_d_res_opt_method . _reflns.phase_calculation_details . _reflns.pdbx_Rrim_I_all . _reflns.pdbx_Rpim_I_all . _reflns.pdbx_d_opt . _reflns.pdbx_number_measured_all . _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 0.89 _reflns_shell.d_res_low 0.91 _reflns_shell.meanI_over_sigI_all . _reflns_shell.meanI_over_sigI_obs 25.4 _reflns_shell.number_measured_all . _reflns_shell.number_measured_obs . _reflns_shell.number_possible . _reflns_shell.number_unique_all . _reflns_shell.number_unique_obs . _reflns_shell.percent_possible_all 93.9 _reflns_shell.percent_possible_obs . _reflns_shell.Rmerge_F_all . _reflns_shell.Rmerge_F_obs . _reflns_shell.Rmerge_I_all . _reflns_shell.Rmerge_I_obs . _reflns_shell.meanI_over_sigI_gt . _reflns_shell.meanI_over_uI_all . _reflns_shell.meanI_over_uI_gt . _reflns_shell.number_measured_gt . _reflns_shell.number_unique_gt . _reflns_shell.percent_possible_gt . _reflns_shell.Rmerge_F_gt . _reflns_shell.Rmerge_I_gt . _reflns_shell.pdbx_redundancy . _reflns_shell.pdbx_Rsym_value . _reflns_shell.pdbx_chi_squared . _reflns_shell.pdbx_netI_over_sigmaI_all . _reflns_shell.pdbx_netI_over_sigmaI_obs . _reflns_shell.pdbx_Rrim_I_all . _reflns_shell.pdbx_Rpim_I_all . _reflns_shell.pdbx_rejects . _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.aniso_B[1][1] 0.05 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.04 _refine.aniso_B[2][2] -0.07 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] 0.01 _refine.B_iso_max . _refine.B_iso_mean 2.970 _refine.B_iso_min . _refine.correlation_coeff_Fo_to_Fc 0.992 _refine.correlation_coeff_Fo_to_Fc_free 0.990 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max . _refine.diff_density_max_esd . _refine.diff_density_min . _refine.diff_density_min_esd . _refine.diff_density_rms . _refine.diff_density_rms_esd . _refine.entry_id 4OY5 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details . _refine.ls_abs_structure_Flack . _refine.ls_abs_structure_Flack_esd . _refine.ls_abs_structure_Rogers . _refine.ls_abs_structure_Rogers_esd . _refine.ls_d_res_high 0.89 _refine.ls_d_res_low 19.16 _refine.ls_extinction_coef . _refine.ls_extinction_coef_esd . _refine.ls_extinction_expression . _refine.ls_extinction_method . _refine.ls_goodness_of_fit_all . _refine.ls_goodness_of_fit_all_esd . _refine.ls_goodness_of_fit_obs . _refine.ls_goodness_of_fit_obs_esd . _refine.ls_hydrogen_treatment . _refine.ls_matrix_type . _refine.ls_number_constraints . _refine.ls_number_parameters . _refine.ls_number_reflns_all . _refine.ls_number_reflns_obs 9756 _refine.ls_number_reflns_R_free 514 _refine.ls_number_reflns_R_work . _refine.ls_number_restraints . _refine.ls_percent_reflns_obs 96.63 _refine.ls_percent_reflns_R_free 5.0 _refine.ls_R_factor_all . _refine.ls_R_factor_obs 0.06773 _refine.ls_R_factor_R_free 0.07732 _refine.ls_R_factor_R_free_error . _refine.ls_R_factor_R_free_error_details . _refine.ls_R_factor_R_work 0.06722 _refine.ls_R_Fsqd_factor_obs . _refine.ls_R_I_factor_obs . _refine.ls_redundancy_reflns_all . _refine.ls_redundancy_reflns_obs . _refine.ls_restrained_S_all . _refine.ls_restrained_S_obs . _refine.ls_shift_over_esd_max . _refine.ls_shift_over_esd_mean . _refine.ls_structure_factor_coef . _refine.ls_weighting_details . _refine.ls_weighting_scheme . _refine.ls_wR_factor_all . _refine.ls_wR_factor_obs . _refine.ls_wR_factor_R_free . _refine.ls_wR_factor_R_work . _refine.occupancy_max . _refine.occupancy_min . _refine.overall_SU_B 0.205 _refine.overall_SU_ML 0.006 _refine.overall_SU_R_Cruickshank_DPI . _refine.overall_SU_R_free . _refine.overall_FOM_free_R_set . _refine.overall_FOM_work_R_set . _refine.solvent_model_details MASK _refine.solvent_model_param_bsol . _refine.solvent_model_param_ksol . _refine.ls_R_factor_gt . _refine.ls_goodness_of_fit_gt . _refine.ls_goodness_of_fit_ref . _refine.ls_shift_over_su_max . _refine.ls_shift_over_su_max_lt . _refine.ls_shift_over_su_mean . _refine.ls_shift_over_su_mean_lt . _refine.pdbx_ls_sigma_I . _refine.pdbx_ls_sigma_F . _refine.pdbx_ls_sigma_Fsqd . _refine.pdbx_data_cutoff_high_absF . _refine.pdbx_data_cutoff_high_rms_absF . _refine.pdbx_data_cutoff_low_absF . _refine.pdbx_isotropic_thermal_model . _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'AB INITIO PHASING' _refine.pdbx_starting_model . _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case . _refine.pdbx_overall_ESU_R 0.010 _refine.pdbx_overall_ESU_R_Free 0.010 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R . _refine.pdbx_density_correlation . _refine.pdbx_pd_number_of_powder_patterns . _refine.pdbx_pd_number_of_points . _refine.pdbx_pd_meas_number_of_points . _refine.pdbx_pd_proc_ls_prof_R_factor . _refine.pdbx_pd_proc_ls_prof_wR_factor . _refine.pdbx_pd_Marquardt_correlation_coeff . _refine.pdbx_pd_Fsqrd_R_factor . _refine.pdbx_pd_ls_matrix_band_width . _refine.pdbx_overall_phase_error . _refine.pdbx_overall_SU_R_free_Cruickshank_DPI . _refine.pdbx_overall_SU_R_free_Blow_DPI . _refine.pdbx_overall_SU_R_Blow_DPI . _refine.pdbx_TLS_residual_ADP_flag . _refine.pdbx_diffrn_id 1 # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 133 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 52 _refine_hist.number_atoms_total 185 _refine_hist.d_res_high 0.89 _refine_hist.d_res_low 19.16 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' . 0.047 0.020 146 . r_bond_refined_d . . 'X-RAY DIFFRACTION' . 0.007 0.020 147 . r_bond_other_d . . 'X-RAY DIFFRACTION' . 4.406 2.573 188 . r_angle_refined_deg . . 'X-RAY DIFFRACTION' . 4.291 3.000 377 . r_angle_other_deg . . 'X-RAY DIFFRACTION' . 3.006 5.000 7 . r_dihedral_angle_1_deg . . 'X-RAY DIFFRACTION' . . . . . r_dihedral_angle_2_deg . . 'X-RAY DIFFRACTION' . . . . . r_dihedral_angle_3_deg . . 'X-RAY DIFFRACTION' . . . . . r_dihedral_angle_4_deg . . 'X-RAY DIFFRACTION' . 0.279 0.200 24 . r_chiral_restr . . 'X-RAY DIFFRACTION' . 0.016 0.030 80 . r_gen_planes_refined . . 'X-RAY DIFFRACTION' . 0.014 0.020 8 . r_gen_planes_other . . 'X-RAY DIFFRACTION' . . . . . r_nbd_refined . . 'X-RAY DIFFRACTION' . . . . . r_nbd_other . . 'X-RAY DIFFRACTION' . . . . . r_nbtor_refined . . 'X-RAY DIFFRACTION' . . . . . r_nbtor_other . . 'X-RAY DIFFRACTION' . . . . . r_xyhbond_nbd_refined . . 'X-RAY DIFFRACTION' . . . . . r_xyhbond_nbd_other . . 'X-RAY DIFFRACTION' . . . . . r_metal_ion_refined . . 'X-RAY DIFFRACTION' . . . . . r_metal_ion_other . . 'X-RAY DIFFRACTION' . . . . . r_symmetry_vdw_refined . . 'X-RAY DIFFRACTION' . . . . . r_symmetry_vdw_other . . 'X-RAY DIFFRACTION' . . . . . r_symmetry_hbond_refined . . 'X-RAY DIFFRACTION' . . . . . r_symmetry_hbond_other . . 'X-RAY DIFFRACTION' . . . . . r_symmetry_metal_ion_refined . . 'X-RAY DIFFRACTION' . . . . . r_symmetry_metal_ion_other . . 'X-RAY DIFFRACTION' . . . . . r_mcbond_it . . 'X-RAY DIFFRACTION' . . . . . r_mcbond_other . . 'X-RAY DIFFRACTION' . . . . . r_mcangle_it . . 'X-RAY DIFFRACTION' . . . . . r_mcangle_other . . 'X-RAY DIFFRACTION' . . . . . r_scbond_it . . 'X-RAY DIFFRACTION' . . . . . r_scbond_other . . 'X-RAY DIFFRACTION' . . . . . r_scangle_it . . 'X-RAY DIFFRACTION' . . . . . r_scangle_other . . 'X-RAY DIFFRACTION' . . . . . r_long_range_B_refined . . 'X-RAY DIFFRACTION' . . . . . r_long_range_B_other . . 'X-RAY DIFFRACTION' . 7.333 3.000 286 . r_rigid_bond_restr . . 'X-RAY DIFFRACTION' . 3.143 5.000 2 . r_sphericity_free . . 'X-RAY DIFFRACTION' . 2.656 5.000 348 . r_sphericity_bonded . . # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 0.889 _refine_ls_shell.d_res_low 0.912 _refine_ls_shell.number_reflns_all . _refine_ls_shell.number_reflns_obs . _refine_ls_shell.number_reflns_R_free 36 _refine_ls_shell.number_reflns_R_work 686 _refine_ls_shell.percent_reflns_obs 90.70 _refine_ls_shell.percent_reflns_R_free . _refine_ls_shell.R_factor_all . _refine_ls_shell.R_factor_obs . _refine_ls_shell.R_factor_R_free 0.096 _refine_ls_shell.R_factor_R_free_error . _refine_ls_shell.R_factor_R_work 0.088 _refine_ls_shell.redundancy_reflns_all . _refine_ls_shell.redundancy_reflns_obs . _refine_ls_shell.wR_factor_all . _refine_ls_shell.wR_factor_obs . _refine_ls_shell.wR_factor_R_free . _refine_ls_shell.wR_factor_R_work . _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error . # _struct.entry_id 4OY5 _struct.title '0.89 Angstrom resolution crystal structure of (Gly-Pro-Hyp)10' _struct.pdbx_model_details . _struct.pdbx_formula_weight . _struct.pdbx_formula_weight_method . _struct.pdbx_model_type_details . _struct.pdbx_CASP_flag . # _struct_keywords.entry_id 4OY5 _struct_keywords.text 'Collagen, GPO, STRUCTURAL PROTEIN' _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4OY5 _struct_ref.pdbx_db_accession 4OY5 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4OY5 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 30 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 4OY5 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 30 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 30 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details TRIPLEX _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B 1 2 A,B 1 3 A,B 1 4 A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 1_553 x,y,z-2 1.0000000000 0.0000000000 0.0000000000 10.5785805981 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 -38.3268995945 3 'crystal symmetry operation' 1_554 x,y,z-1 1.0000000000 0.0000000000 0.0000000000 5.2892902991 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 -19.1634497973 4 'crystal symmetry operation' 1_556 x,y,z+1 1.0000000000 0.0000000000 0.0000000000 -5.2892902991 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 19.1634497973 # _struct_biol.details ;THE BIOLOGICAL UNIT IS TRIPLEX. SINCE THE PEPTIDE STRUCTURE IS HIGHLY REPEATED AND THE CRYSTAL STRUCTURE IS AVERAGED STRUCTURE OF PEPTIDES IN A CRYSTAL. IN THIS CASE, THE STRUCTURE SOMETIMES LOOKS A CONTINUOUS PEPTIDE BY OVERLAPPING. ; _struct_biol.id 1 _struct_biol.pdbx_aggregation_state ? _struct_biol.pdbx_assembly_method ? _struct_biol.pdbx_formula_weight ? _struct_biol.pdbx_formula_weight_method ? _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLY 1 N ? ? ? 1_555 A HYP 21 C ? ? A GLY 1 A HYP 21 1_558 ? ? ? ? ? ? ? 1.346 ? ? covale2 covale both ? A PRO 2 C ? ? ? 1_555 A HYP 3 N ? ? A PRO 2 A HYP 3 1_555 ? ? ? ? ? ? ? 1.357 ? ? covale3 covale both ? A HYP 3 C ? ? ? 1_555 A GLY 4 N ? ? A HYP 3 A GLY 4 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale4 covale both ? A PRO 5 C ? ? ? 1_555 A HYP 6 N ? ? A PRO 5 A HYP 6 1_555 ? ? ? ? ? ? ? 1.353 ? ? covale5 covale both ? A HYP 6 C ? ? ? 1_555 A GLY 7 N ? ? A HYP 6 A GLY 7 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale6 covale both ? A PRO 8 C ? ? ? 1_555 A HYP 9 N A ? A PRO 8 A HYP 9 1_555 ? ? ? ? ? ? ? 1.304 ? ? covale7 covale both ? A HYP 9 C ? ? ? 1_555 A GLY 10 N ? ? A HYP 9 A GLY 10 1_555 ? ? ? ? ? ? ? 1.355 ? ? covale8 covale both ? A PRO 11 C ? ? ? 1_555 A HYP 12 N ? ? A PRO 11 A HYP 12 1_555 ? ? ? ? ? ? ? 1.363 ? ? covale9 covale both ? A HYP 12 C ? ? ? 1_555 A GLY 13 N ? ? A HYP 12 A GLY 13 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale10 covale both ? A PRO 14 C ? ? ? 1_555 A HYP 15 N ? ? A PRO 14 A HYP 15 1_555 ? ? ? ? ? ? ? 1.365 ? ? covale11 covale both ? A HYP 15 C ? ? ? 1_555 A GLY 16 N ? ? A HYP 15 A GLY 16 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale12 covale both ? A PRO 17 C ? ? ? 1_555 A HYP 18 N ? ? A PRO 17 A HYP 18 1_555 ? ? ? ? ? ? ? 1.368 ? ? covale13 covale both ? A HYP 18 C ? ? ? 1_555 A GLY 19 N ? ? A HYP 18 A GLY 19 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale14 covale both ? A PRO 20 C ? ? ? 1_555 A HYP 21 N ? ? A PRO 20 A HYP 21 1_555 ? ? ? ? ? ? ? 1.374 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CB A PRO 5 ? ? CG A PRO 5 ? B 1.176 1.495 -0.319 0.050 N 2 1 C A PRO 8 ? ? N A HYP 9 ? B 1.645 1.336 0.309 0.023 Y # _pdbx_validate_polymer_linkage.id 1 _pdbx_validate_polymer_linkage.PDB_model_num 1 _pdbx_validate_polymer_linkage.auth_atom_id_1 C _pdbx_validate_polymer_linkage.auth_asym_id_1 A _pdbx_validate_polymer_linkage.auth_comp_id_1 PRO _pdbx_validate_polymer_linkage.auth_seq_id_1 8 _pdbx_validate_polymer_linkage.PDB_ins_code_1 ? _pdbx_validate_polymer_linkage.label_alt_id_1 ? _pdbx_validate_polymer_linkage.auth_atom_id_2 N _pdbx_validate_polymer_linkage.auth_asym_id_2 A _pdbx_validate_polymer_linkage.auth_comp_id_2 HYP _pdbx_validate_polymer_linkage.auth_seq_id_2 9 _pdbx_validate_polymer_linkage.PDB_ins_code_2 ? _pdbx_validate_polymer_linkage.label_alt_id_2 B _pdbx_validate_polymer_linkage.dist 1.65 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 22 ? A GLY 22 2 1 Y 1 A PRO 23 ? A PRO 23 3 1 Y 1 A HYP 24 ? A HYP 24 4 1 Y 1 A GLY 25 ? A GLY 25 5 1 Y 1 A PRO 26 ? A PRO 26 6 1 Y 1 A HYP 27 ? A HYP 27 7 1 Y 1 A GLY 28 ? A GLY 28 8 1 Y 1 A PRO 29 ? A PRO 29 9 1 Y 1 A HYP 30 ? A HYP 30 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal GLY N N N N 1 GLY CA C N N 2 GLY C C N N 3 GLY O O N N 4 GLY OXT O N N 5 GLY H H N N 6 GLY H2 H N N 7 GLY HA2 H N N 8 GLY HA3 H N N 9 GLY HXT H N N 10 HOH O O N N 11 HOH H1 H N N 12 HOH H2 H N N 13 HYP N N N N 14 HYP CA C N S 15 HYP C C N N 16 HYP O O N N 17 HYP CB C N N 18 HYP CG C N R 19 HYP CD C N N 20 HYP OD1 O N N 21 HYP OXT O N N 22 HYP H H N N 23 HYP HA H N N 24 HYP HB2 H N N 25 HYP HB3 H N N 26 HYP HG H N N 27 HYP HD22 H N N 28 HYP HD23 H N N 29 HYP HD1 H N N 30 HYP HXT H N N 31 PRO N N N N 32 PRO CA C N S 33 PRO C C N N 34 PRO O O N N 35 PRO CB C N N 36 PRO CG C N N 37 PRO CD C N N 38 PRO OXT O N N 39 PRO H H N N 40 PRO HA H N N 41 PRO HB2 H N N 42 PRO HB3 H N N 43 PRO HG2 H N N 44 PRO HG3 H N N 45 PRO HD2 H N N 46 PRO HD3 H N N 47 PRO HXT H N N 48 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GLY N CA sing N N 1 GLY N H sing N N 2 GLY N H2 sing N N 3 GLY CA C sing N N 4 GLY CA HA2 sing N N 5 GLY CA HA3 sing N N 6 GLY C O doub N N 7 GLY C OXT sing N N 8 GLY OXT HXT sing N N 9 HOH O H1 sing N N 10 HOH O H2 sing N N 11 HYP N CA sing N N 12 HYP N CD sing N N 13 HYP N H sing N N 14 HYP CA C sing N N 15 HYP CA CB sing N N 16 HYP CA HA sing N N 17 HYP C O doub N N 18 HYP C OXT sing N N 19 HYP CB CG sing N N 20 HYP CB HB2 sing N N 21 HYP CB HB3 sing N N 22 HYP CG CD sing N N 23 HYP CG OD1 sing N N 24 HYP CG HG sing N N 25 HYP CD HD22 sing N N 26 HYP CD HD23 sing N N 27 HYP OD1 HD1 sing N N 28 HYP OXT HXT sing N N 29 PRO N CA sing N N 30 PRO N CD sing N N 31 PRO N H sing N N 32 PRO CA C sing N N 33 PRO CA CB sing N N 34 PRO CA HA sing N N 35 PRO C O doub N N 36 PRO C OXT sing N N 37 PRO CB CG sing N N 38 PRO CB HB2 sing N N 39 PRO CB HB3 sing N N 40 PRO CG CD sing N N 41 PRO CG HG2 sing N N 42 PRO CG HG3 sing N N 43 PRO CD HD2 sing N N 44 PRO CD HD3 sing N N 45 PRO OXT HXT sing N N 46 # _atom_sites.entry_id 4OY5 _atom_sites.fract_transf_matrix[1][1] 0.072150 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.019914 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.038241 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.052183 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O # loop_