HEADER LYASE 12-FEB-14 4OYI TITLE HUMAN SOLAC COMPLEXED WITH (4-AMINO-FURAZAN-3-YL)-PHENYL-METHANONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENYLATE CYCLASE TYPE 10; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AH-RELATED PROTEIN, ADENYLATE CYCLASE HOMOLOG, GERM CELL COMPND 5 SOLUBLE ADENYLYL CYCLASE, SAC, TESTICULAR SOLUBLE ADENYLYL CYCLASE; COMPND 6 EC: 4.6.1.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ADCY10, SAC; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS LYASE EXPDTA X-RAY DIFFRACTION AUTHOR M.VINKOVIC REVDAT 4 30-OCT-24 4OYI 1 REMARK REVDAT 3 27-DEC-23 4OYI 1 SOURCE REMARK CRYST1 REVDAT 2 01-OCT-14 4OYI 1 JRNL REVDAT 1 02-APR-14 4OYI 0 JRNL AUTH S.M.SAALAU-BETHELL,V.BERDINI,A.CLEASBY,M.CONGREVE,J.E.COYLE, JRNL AUTH 2 V.LOCK,C.W.MURRAY,M.A.O'BRIEN,S.J.RICH,T.SAMBROOK, JRNL AUTH 3 M.VINKOVIC,J.R.YON,H.JHOTI JRNL TITL CRYSTAL STRUCTURE OF HUMAN SOLUBLE ADENYLATE CYCLASE REVEALS JRNL TITL 2 A DISTINCT, HIGHLY FLEXIBLE ALLOSTERIC BICARBONATE BINDING JRNL TITL 3 POCKET. JRNL REF CHEMMEDCHEM V. 9 823 2014 JRNL REFN ESSN 1860-7187 JRNL PMID 24616449 JRNL DOI 10.1002/CMDC.201300480 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0064 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 3 NUMBER OF REFLECTIONS : 53866 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2813 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2972 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 71.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.2670 REMARK 3 BIN FREE R VALUE SET COUNT : 151 REMARK 3 BIN FREE R VALUE : 0.3120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3742 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 624 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11000 REMARK 3 B22 (A**2) : 0.11000 REMARK 3 B33 (A**2) : -0.37000 REMARK 3 B12 (A**2) : 0.06000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.105 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.105 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.071 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.120 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3902 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3728 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5282 ; 1.515 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8598 ; 0.882 ; 2.998 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 479 ; 5.803 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 180 ;34.069 ;24.722 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 690 ;14.595 ;15.304 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;16.153 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 582 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4383 ; 0.001 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 904 ; 0.000 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1886 ; 4.357 ; 6.125 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1886 ; 4.355 ; 6.125 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2016 ; 5.606 ; 7.402 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2017 ; 5.604 ; 7.400 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1363 ;11.635 ;14.832 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1364 ;11.631 ;14.829 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 468 REMARK 3 ORIGIN FOR THE GROUP (A): 21.6006 25.2764 -2.0249 REMARK 3 T TENSOR REMARK 3 T11: 0.0160 T22: 0.0275 REMARK 3 T33: 0.0121 T12: 0.0048 REMARK 3 T13: 0.0031 T23: 0.0179 REMARK 3 L TENSOR REMARK 3 L11: 0.0385 L22: 0.0830 REMARK 3 L33: 0.1329 L12: -0.0064 REMARK 3 L13: 0.0611 L23: -0.0208 REMARK 3 S TENSOR REMARK 3 S11: -0.0189 S12: -0.0087 S13: -0.0046 REMARK 3 S21: 0.0036 S22: 0.0302 S23: 0.0244 REMARK 3 S31: -0.0135 S32: -0.0198 S33: -0.0113 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 501 A 501 REMARK 3 ORIGIN FOR THE GROUP (A): 18.1131 23.5310 -1.1511 REMARK 3 T TENSOR REMARK 3 T11: 0.0244 T22: 0.4837 REMARK 3 T33: 0.0081 T12: -0.0111 REMARK 3 T13: -0.0013 T23: -0.0349 REMARK 3 L TENSOR REMARK 3 L11: 0.9422 L22: 0.4435 REMARK 3 L33: 11.3662 L12: 0.4894 REMARK 3 L13: -3.1458 L23: -2.0381 REMARK 3 S TENSOR REMARK 3 S11: -0.0791 S12: -0.1808 S13: 0.0483 REMARK 3 S21: -0.0645 S22: 0.1997 S23: 0.0078 REMARK 3 S31: 0.3245 S32: -0.0150 S33: -0.1206 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4OYI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000200252. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56679 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 28.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1UL OF PROTEIN SOLUTION WAS MIXED WITH REMARK 280 1UL OF RESERVOIR SOLUTION (0.1M SODIUM ACETATE, PH 4.8, 0.2M REMARK 280 TRISODIUM CITRATE, 16-18% PEG4K AND 10% GLYCEROL) AND LEFT TO REMARK 280 EQUILIBRATE AT 4C, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 48.87200 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 48.87200 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 48.87200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 56730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 98.99500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 49.49750 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 85.73218 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 762 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1062 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 469 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 468 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1075 O HOH A 1104 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ACE A 0 C MET A 1 N 0.214 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 5 -160.61 -102.54 REMARK 500 GLU A 6 95.61 59.88 REMARK 500 HIS A 28 73.21 36.94 REMARK 500 GLU A 136 -75.26 33.84 REMARK 500 GLU A 137 12.54 -153.95 REMARK 500 ASP A 159 -157.38 -123.76 REMARK 500 ASN A 185 -0.29 78.04 REMARK 500 ASP A 258 95.19 -167.86 REMARK 500 ASP A 339 9.61 56.08 REMARK 500 LYS A 340 -10.43 75.15 REMARK 500 LYS A 354 -140.83 -52.05 REMARK 500 VAL A 355 124.49 105.56 REMARK 500 LYS A 378 -6.86 80.59 REMARK 500 ARG A 401 104.08 -161.78 REMARK 500 ASN A 436 -0.76 60.49 REMARK 500 ASP A 455 75.56 60.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 970 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A1062 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH A1066 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH A1067 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH A1153 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH A1171 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A1176 DISTANCE = 6.82 ANGSTROMS REMARK 525 HOH A1185 DISTANCE = 6.06 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1VK A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4OYA RELATED DB: PDB REMARK 900 RELATED ID: 4OYB RELATED DB: PDB REMARK 900 RELATED ID: 4OYM RELATED DB: PDB REMARK 900 RELATED ID: 4OYO RELATED DB: PDB REMARK 900 RELATED ID: 4OYP RELATED DB: PDB REMARK 900 RELATED ID: 4OYW RELATED DB: PDB REMARK 900 RELATED ID: 4OYX RELATED DB: PDB REMARK 900 RELATED ID: 4OYZ RELATED DB: PDB REMARK 900 RELATED ID: 4OZ2 RELATED DB: PDB REMARK 900 RELATED ID: 4OZ3 RELATED DB: PDB DBREF 4OYI A 1 469 UNP Q96PN6 ADCYA_HUMAN 1 469 SEQADV 4OYI ACE A 0 UNP Q96PN6 ACETYLATION SEQRES 1 A 470 ACE MET ASN THR PRO LYS GLU GLU PHE GLN ASP TRP PRO SEQRES 2 A 470 ILE VAL ARG ILE ALA ALA HIS LEU PRO ASP LEU ILE VAL SEQRES 3 A 470 TYR GLY HIS PHE SER PRO GLU ARG PRO PHE MET ASP TYR SEQRES 4 A 470 PHE ASP GLY VAL LEU MET PHE VAL ASP ILE SER GLY PHE SEQRES 5 A 470 THR ALA MET THR GLU LYS PHE SER SER ALA MET TYR MET SEQRES 6 A 470 ASP ARG GLY ALA GLU GLN LEU VAL GLU ILE LEU ASN TYR SEQRES 7 A 470 HIS ILE SER ALA ILE VAL GLU LYS VAL LEU ILE PHE GLY SEQRES 8 A 470 GLY ASP ILE LEU LYS PHE ALA GLY ASP ALA LEU LEU ALA SEQRES 9 A 470 LEU TRP ARG VAL GLU ARG LYS GLN LEU LYS ASN ILE ILE SEQRES 10 A 470 THR VAL VAL ILE LYS CYS SER LEU GLU ILE HIS GLY LEU SEQRES 11 A 470 PHE GLU THR GLN GLU TRP GLU GLU GLY LEU ASP ILE ARG SEQRES 12 A 470 VAL LYS ILE GLY LEU ALA ALA GLY HIS ILE SER MET LEU SEQRES 13 A 470 VAL PHE GLY ASP GLU THR HIS SER HIS PHE LEU VAL ILE SEQRES 14 A 470 GLY GLN ALA VAL ASP ASP VAL ARG LEU ALA GLN ASN MET SEQRES 15 A 470 ALA GLN MET ASN ASP VAL ILE LEU SER PRO ASN CYS TRP SEQRES 16 A 470 GLN LEU CYS ASP ARG SER MET ILE GLU ILE GLU SER VAL SEQRES 17 A 470 PRO ASP GLN ARG ALA VAL LYS VAL ASN PHE LEU LYS PRO SEQRES 18 A 470 PRO PRO ASN PHE ASN PHE ASP GLU PHE PHE THR LYS CYS SEQRES 19 A 470 THR THR PHE MET HIS TYR TYR PRO SER GLY GLU HIS LYS SEQRES 20 A 470 ASN LEU LEU ARG LEU ALA CME THR LEU LYS PRO ASP PRO SEQRES 21 A 470 GLU LEU GLU MET SER LEU GLN LYS TYR VAL MET GLU SER SEQRES 22 A 470 ILE LEU LYS GLN ILE ASP ASN LYS GLN LEU GLN GLY TYR SEQRES 23 A 470 LEU SER GLU LEU ARG PRO VAL THR ILE VAL PHE VAL ASN SEQRES 24 A 470 LEU MET PHE GLU ASP GLN ASP LYS ALA GLU GLU ILE GLY SEQRES 25 A 470 PRO ALA ILE GLN ASP ALA TYR MET HIS ILE THR SER VAL SEQRES 26 A 470 LEU LYS ILE PHE GLN GLY GLN ILE ASN LYS VAL PHE MET SEQRES 27 A 470 PHE ASP LYS GLY CYS SER PHE LEU CYS VAL PHE GLY PHE SEQRES 28 A 470 PRO GLY GLU LYS VAL PRO ASP GLU LEU THR HIS ALA LEU SEQRES 29 A 470 GLU CYS ALA MET ASP ILE PHE ASP PHE CYS SER GLN VAL SEQRES 30 A 470 HIS LYS ILE GLN THR VAL SER ILE GLY VAL ALA SER GLY SEQRES 31 A 470 ILE VAL PHE CYS GLY ILE VAL GLY HIS THR VAL ARG HIS SEQRES 32 A 470 GLU TYR THR VAL ILE GLY GLN LYS VAL ASN LEU ALA ALA SEQRES 33 A 470 ARG MET MET MET TYR TYR PRO GLY ILE VAL THR CYS ASP SEQRES 34 A 470 SER VAL THR TYR ASN GLY SER ASN LEU PRO ALA TYR PHE SEQRES 35 A 470 PHE LYS GLU LEU PRO LYS LYS VAL MET LYS GLY VAL ALA SEQRES 36 A 470 ASP SER GLY PRO LEU TYR GLN TYR TRP GLY ARG THR GLU SEQRES 37 A 470 LYS VAL MODRES 4OYI CME A 253 CYS MODIFIED RESIDUE HET ACE A 0 3 HET CME A 253 10 HET 1VK A 501 21 HET GOL A 502 12 HET GOL A 503 6 HETNAM ACE ACETYL GROUP HETNAM CME S,S-(2-HYDROXYETHYL)THIOCYSTEINE HETNAM 1VK (4-AZANYL-1,2,5-OXADIAZOL-3-YL)-PHENYL-METHANONE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 ACE C2 H4 O FORMUL 1 CME C5 H11 N O3 S2 FORMUL 2 1VK C9 H7 N3 O2 FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *624(H2 O) HELIX 1 AA1 TRP A 11 ALA A 18 1 8 HELIX 2 AA2 PRO A 21 TYR A 26 1 6 HELIX 3 AA3 ILE A 48 ALA A 53 1 6 HELIX 4 AA4 MET A 54 SER A 59 1 6 HELIX 5 AA5 SER A 60 MET A 64 5 5 HELIX 6 AA6 ARG A 66 PHE A 89 1 24 HELIX 7 AA7 GLU A 108 LYS A 110 5 3 HELIX 8 AA8 GLN A 111 PHE A 130 1 20 HELIX 9 AA9 GLY A 169 ALA A 182 1 14 HELIX 10 AB1 SER A 190 CYS A 197 1 8 HELIX 11 AB2 ASN A 225 THR A 235 1 11 HELIX 12 AB3 SER A 242 LYS A 246 5 5 HELIX 13 AB4 ARG A 250 LEU A 255 5 6 HELIX 14 AB5 ASP A 258 LYS A 267 1 10 HELIX 15 AB6 MET A 270 ASP A 278 1 9 HELIX 16 AB7 LYS A 306 PHE A 328 1 23 HELIX 17 AB8 ASP A 357 SER A 374 1 18 HELIX 18 AB9 GLY A 408 TYR A 421 1 14 HELIX 19 AC1 ASP A 428 ASN A 436 1 9 HELIX 20 AC2 PRO A 438 TYR A 440 5 3 SHEET 1 AA1 5 ASP A 92 PHE A 96 0 SHEET 2 AA1 5 ALA A 100 ARG A 106 -1 O LEU A 104 N ASP A 92 SHEET 3 AA1 5 PHE A 35 ASP A 47 -1 N MET A 44 O ALA A 103 SHEET 4 AA1 5 LYS A 144 GLY A 158 -1 O LYS A 144 N ASP A 47 SHEET 5 AA1 5 SER A 163 ILE A 168 -1 O LEU A 166 N LEU A 155 SHEET 1 AA2 7 ASP A 92 PHE A 96 0 SHEET 2 AA2 7 ALA A 100 ARG A 106 -1 O LEU A 104 N ASP A 92 SHEET 3 AA2 7 PHE A 35 ASP A 47 -1 N MET A 44 O ALA A 103 SHEET 4 AA2 7 LYS A 144 GLY A 158 -1 O LYS A 144 N ASP A 47 SHEET 5 AA2 7 VAL A 187 LEU A 189 1 O ILE A 188 N LEU A 147 SHEET 6 AA2 7 GLN A 210 LEU A 218 -1 O VAL A 213 N LEU A 189 SHEET 7 AA2 7 ILE A 202 VAL A 207 -1 N GLU A 205 O LYS A 214 SHEET 1 AA3 5 GLN A 331 PHE A 338 0 SHEET 2 AA3 5 GLY A 341 PHE A 348 -1 O LEU A 345 N ASN A 333 SHEET 3 AA3 5 GLU A 288 PHE A 301 -1 N VAL A 295 O CYS A 346 SHEET 4 AA3 5 ILE A 379 HIS A 398 -1 O ALA A 387 N ILE A 294 SHEET 5 AA3 5 ARG A 401 ILE A 407 -1 O ILE A 407 N PHE A 392 SHEET 1 AA4 7 GLN A 331 PHE A 338 0 SHEET 2 AA4 7 GLY A 341 PHE A 348 -1 O LEU A 345 N ASN A 333 SHEET 3 AA4 7 GLU A 288 PHE A 301 -1 N VAL A 295 O CYS A 346 SHEET 4 AA4 7 ILE A 379 HIS A 398 -1 O ALA A 387 N ILE A 294 SHEET 5 AA4 7 VAL A 425 CYS A 427 1 O THR A 426 N ILE A 384 SHEET 6 AA4 7 TYR A 460 TYR A 462 -1 O TYR A 460 N CYS A 427 SHEET 7 AA4 7 PHE A 442 GLU A 444 -1 N LYS A 443 O GLN A 461 LINK C ACE A 0 N MET A 1 1555 1555 1.55 LINK C ALA A 252 N CME A 253 1555 1555 1.34 LINK C CME A 253 N THR A 254 1555 1555 1.33 CISPEP 1 ARG A 33 PRO A 34 0 2.92 SITE 1 AC1 9 PHE A 45 LYS A 95 ALA A 97 LEU A 102 SITE 2 AC1 9 LEU A 166 VAL A 167 PHE A 336 MET A 337 SITE 3 AC1 9 PHE A 338 SITE 1 AC2 7 HIS A 162 THR A 322 LYS A 326 GLY A 330 SITE 2 AC2 7 GLN A 331 ILE A 332 HOH A 870 SITE 1 AC3 10 ILE A 24 VAL A 25 TYR A 26 GLY A 27 SITE 2 AC3 10 HIS A 28 PHE A 29 LEU A 261 SER A 264 SITE 3 AC3 10 HOH A 810 HOH A1218 CRYST1 98.995 98.995 97.744 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010102 0.005832 0.000000 0.00000 SCALE2 0.000000 0.011664 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010231 0.00000 HETATM 1 C ACE A 0 62.931 12.867 25.104 1.00 47.05 C ANISOU 1 C ACE A 0 5970 6061 5847 228 -136 -49 C HETATM 2 O ACE A 0 63.592 13.744 24.557 1.00 37.42 O ANISOU 2 O ACE A 0 4738 4852 4629 219 -137 -51 O HETATM 3 CH3 ACE A 0 63.274 12.137 26.403 1.00 52.79 C ANISOU 3 CH3 ACE A 0 6708 6778 6573 241 -146 -51 C