HEADER LYASE 13-FEB-14 4OYX TITLE HUMAN SOLAC COMPLEXED WITH AMPCPP COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENYLATE CYCLASE TYPE 10; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AH-RELATED PROTEIN, ADENYLATE CYCLASE HOMOLOG, GERM CELL COMPND 5 SOLUBLE ADENYLYL CYCLASE, SAC, TESTICULAR SOLUBLE ADENYLYL CYCLASE; COMPND 6 EC: 4.6.1.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ADCY10, SAC; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS PROTEIN-SUBSTRATE ANALOGUE COMPLEX, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR M.VINKOVIC REVDAT 3 27-DEC-23 4OYX 1 SOURCE REMARK CRYST1 REVDAT 2 01-OCT-14 4OYX 1 JRNL REVDAT 1 02-APR-14 4OYX 0 JRNL AUTH S.M.SAALAU-BETHELL,V.BERDINI,A.CLEASBY,M.CONGREVE,J.E.COYLE, JRNL AUTH 2 V.LOCK,C.W.MURRAY,M.A.O'BRIEN,S.J.RICH,T.SAMBROOK, JRNL AUTH 3 M.VINKOVIC,J.R.YON,H.JHOTI JRNL TITL CRYSTAL STRUCTURE OF HUMAN SOLUBLE ADENYLATE CYCLASE REVEALS JRNL TITL 2 A DISTINCT, HIGHLY FLEXIBLE ALLOSTERIC BICARBONATE BINDING JRNL TITL 3 POCKET. JRNL REF CHEMMEDCHEM V. 9 823 2014 JRNL REFN ESSN 1860-7187 JRNL PMID 24616449 JRNL DOI 10.1002/CMDC.201300480 REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.5 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 66.0 REMARK 3 NUMBER OF REFLECTIONS : 28765 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1444 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 14 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.96 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 66.03 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 338 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2924 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 324 REMARK 3 BIN R VALUE (WORKING SET) : 0.2953 REMARK 3 BIN FREE R VALUE : 0.2245 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.14 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 14 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3742 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 432 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.55 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.11440 REMARK 3 B22 (A**2) : -0.11440 REMARK 3 B33 (A**2) : 0.22880 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.247 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.232 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.194 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.216 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.190 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3878 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5253 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1350 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 95 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 571 ; 16.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3872 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 498 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5000 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.22 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 7.23 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.94 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|0 - A|468 } REMARK 3 ORIGIN FOR THE GROUP (A): 21.8002 25.6910 -2.2197 REMARK 3 T TENSOR REMARK 3 T11: -0.1280 T22: -0.0586 REMARK 3 T33: 0.0067 T12: 0.0152 REMARK 3 T13: -0.0116 T23: 0.0829 REMARK 3 L TENSOR REMARK 3 L11: 1.0285 L22: 0.7519 REMARK 3 L33: 0.9481 L12: -0.0070 REMARK 3 L13: 0.3927 L23: -0.0893 REMARK 3 S TENSOR REMARK 3 S11: -0.0486 S12: -0.0572 S13: 0.0863 REMARK 3 S21: -0.0111 S22: 0.1090 S23: 0.2262 REMARK 3 S31: -0.0433 S32: -0.2276 S33: -0.0604 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|501 - A|501 } REMARK 3 ORIGIN FOR THE GROUP (A): 17.3431 33.9604 -5.9625 REMARK 3 T TENSOR REMARK 3 T11: -0.0238 T22: -0.0072 REMARK 3 T33: 0.0408 T12: 0.0153 REMARK 3 T13: 0.0075 T23: -0.0205 REMARK 3 L TENSOR REMARK 3 L11: 0.1074 L22: 0.0112 REMARK 3 L33: 0.0000 L12: 0.0113 REMARK 3 L13: 0.2006 L23: 0.1440 REMARK 3 S TENSOR REMARK 3 S11: -0.0062 S12: 0.0010 S13: 0.0029 REMARK 3 S21: 0.0064 S22: -0.0004 S23: 0.0023 REMARK 3 S31: 0.0021 S32: -0.0087 S33: 0.0066 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4OYX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000200283. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-APR-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH2R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS HTC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28765 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 49.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 65.7 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1UL OF PROTEIN SOLUTION WAS MIXED WITH REMARK 280 1UL OF RESERVOIR SOLUTION (0.1M SODIUM ACETATE, PH 4.8, 0.2M REMARK 280 TRISODIUM CITRATE, 16-18% PEG4K AND 10% GLYCEROL) AND LEFT TO REMARK 280 EQUILIBRATE AT 4C, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 48.26100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 48.26100 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 48.26100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 55760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -125.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 99.65100 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 49.82550 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 86.30030 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 974 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 469 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 468 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 28 71.69 35.39 REMARK 500 PHE A 39 -167.05 -162.45 REMARK 500 SER A 59 46.73 -98.44 REMARK 500 MET A 64 -115.93 41.81 REMARK 500 THR A 132 -88.10 -75.87 REMARK 500 GLU A 136 79.67 60.40 REMARK 500 GLU A 137 -91.46 37.03 REMARK 500 ASP A 140 -34.52 -135.10 REMARK 500 ASP A 159 -150.47 -125.40 REMARK 500 ASP A 209 -4.13 64.07 REMARK 500 ASN A 216 -60.06 -96.22 REMARK 500 LYS A 219 77.55 -116.06 REMARK 500 ASP A 339 69.21 25.81 REMARK 500 LYS A 340 121.95 81.46 REMARK 500 LYS A 354 95.17 -67.90 REMARK 500 LYS A 378 0.78 89.53 REMARK 500 ASN A 436 0.38 56.74 REMARK 500 ASP A 455 108.03 10.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 974 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A1012 DISTANCE = 6.31 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 47 OD1 REMARK 620 2 ILE A 48 O 95.8 REMARK 620 3 ASP A 99 OD2 160.0 75.4 REMARK 620 4 HOH A 848 O 112.3 134.2 85.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue APC A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4OYA RELATED DB: PDB REMARK 900 RELATED ID: 4OYB RELATED DB: PDB REMARK 900 RELATED ID: 4OYI RELATED DB: PDB REMARK 900 RELATED ID: 4OYM RELATED DB: PDB REMARK 900 RELATED ID: 4OYO RELATED DB: PDB REMARK 900 RELATED ID: 4OYP RELATED DB: PDB REMARK 900 RELATED ID: 4OYW RELATED DB: PDB REMARK 900 RELATED ID: 4OYZ RELATED DB: PDB REMARK 900 RELATED ID: 4OZ2 RELATED DB: PDB REMARK 900 RELATED ID: 4OZ3 RELATED DB: PDB DBREF 4OYX A 1 469 UNP Q96PN6 ADCYA_HUMAN 1 469 SEQADV 4OYX ACE A 0 UNP Q96PN6 ACETYLATION SEQRES 1 A 470 ACE MET ASN THR PRO LYS GLU GLU PHE GLN ASP TRP PRO SEQRES 2 A 470 ILE VAL ARG ILE ALA ALA HIS LEU PRO ASP LEU ILE VAL SEQRES 3 A 470 TYR GLY HIS PHE SER PRO GLU ARG PRO PHE MET ASP TYR SEQRES 4 A 470 PHE ASP GLY VAL LEU MET PHE VAL ASP ILE SER GLY PHE SEQRES 5 A 470 THR ALA MET THR GLU LYS PHE SER SER ALA MET TYR MET SEQRES 6 A 470 ASP ARG GLY ALA GLU GLN LEU VAL GLU ILE LEU ASN TYR SEQRES 7 A 470 HIS ILE SER ALA ILE VAL GLU LYS VAL LEU ILE PHE GLY SEQRES 8 A 470 GLY ASP ILE LEU LYS PHE ALA GLY ASP ALA LEU LEU ALA SEQRES 9 A 470 LEU TRP ARG VAL GLU ARG LYS GLN LEU LYS ASN ILE ILE SEQRES 10 A 470 THR VAL VAL ILE LYS CYS SER LEU GLU ILE HIS GLY LEU SEQRES 11 A 470 PHE GLU THR GLN GLU TRP GLU GLU GLY LEU ASP ILE ARG SEQRES 12 A 470 VAL LYS ILE GLY LEU ALA ALA GLY HIS ILE SER MET LEU SEQRES 13 A 470 VAL PHE GLY ASP GLU THR HIS SER HIS PHE LEU VAL ILE SEQRES 14 A 470 GLY GLN ALA VAL ASP ASP VAL ARG LEU ALA GLN ASN MET SEQRES 15 A 470 ALA GLN MET ASN ASP VAL ILE LEU SER PRO ASN CYS TRP SEQRES 16 A 470 GLN LEU CYS ASP ARG SER MET ILE GLU ILE GLU SER VAL SEQRES 17 A 470 PRO ASP GLN ARG ALA VAL LYS VAL ASN PHE LEU LYS PRO SEQRES 18 A 470 PRO PRO ASN PHE ASN PHE ASP GLU PHE PHE THR LYS CYS SEQRES 19 A 470 THR THR PHE MET HIS TYR TYR PRO SER GLY GLU HIS LYS SEQRES 20 A 470 ASN LEU LEU ARG LEU ALA CME THR LEU LYS PRO ASP PRO SEQRES 21 A 470 GLU LEU GLU MET SER LEU GLN LYS TYR VAL MET GLU SER SEQRES 22 A 470 ILE LEU LYS GLN ILE ASP ASN LYS GLN LEU GLN GLY TYR SEQRES 23 A 470 LEU SER GLU LEU ARG PRO VAL THR ILE VAL PHE VAL ASN SEQRES 24 A 470 LEU MET PHE GLU ASP GLN ASP LYS ALA GLU GLU ILE GLY SEQRES 25 A 470 PRO ALA ILE GLN ASP ALA TYR MET HIS ILE THR SER VAL SEQRES 26 A 470 LEU LYS ILE PHE GLN GLY GLN ILE ASN LYS VAL PHE MET SEQRES 27 A 470 PHE ASP LYS GLY CYS SER PHE LEU CYS VAL PHE GLY PHE SEQRES 28 A 470 PRO GLY GLU LYS VAL PRO ASP GLU LEU THR HIS ALA LEU SEQRES 29 A 470 GLU CYS ALA MET ASP ILE PHE ASP PHE CYS SER GLN VAL SEQRES 30 A 470 HIS LYS ILE GLN THR VAL SER ILE GLY VAL ALA SER GLY SEQRES 31 A 470 ILE VAL PHE CYS GLY ILE VAL GLY HIS THR VAL ARG HIS SEQRES 32 A 470 GLU TYR THR VAL ILE GLY GLN LYS VAL ASN LEU ALA ALA SEQRES 33 A 470 ARG MET MET MET TYR TYR PRO GLY ILE VAL THR CYS ASP SEQRES 34 A 470 SER VAL THR TYR ASN GLY SER ASN LEU PRO ALA TYR PHE SEQRES 35 A 470 PHE LYS GLU LEU PRO LYS LYS VAL MET LYS GLY VAL ALA SEQRES 36 A 470 ASP SER GLY PRO LEU TYR GLN TYR TRP GLY ARG THR GLU SEQRES 37 A 470 LYS VAL MODRES 4OYX CME A 253 CYS MODIFIED RESIDUE HET ACE A 0 3 HET CME A 253 10 HET APC A 501 31 HET CA A 502 1 HET CL A 503 1 HETNAM ACE ACETYL GROUP HETNAM CME S,S-(2-HYDROXYETHYL)THIOCYSTEINE HETNAM APC DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETSYN APC ALPHA,BETA-METHYLENEADENOSINE-5'-TRIPHOSPHATE FORMUL 1 ACE C2 H4 O FORMUL 1 CME C5 H11 N O3 S2 FORMUL 2 APC C11 H18 N5 O12 P3 FORMUL 3 CA CA 2+ FORMUL 4 CL CL 1- FORMUL 5 HOH *432(H2 O) HELIX 1 AA1 TRP A 11 HIS A 19 1 9 HELIX 2 AA2 PRO A 21 TYR A 26 1 6 HELIX 3 AA3 GLY A 50 SER A 59 1 10 HELIX 4 AA4 SER A 60 MET A 64 5 5 HELIX 5 AA5 ARG A 66 PHE A 89 1 24 HELIX 6 AA6 GLU A 108 LYS A 110 5 3 HELIX 7 AA7 GLN A 111 GLY A 128 1 18 HELIX 8 AA8 GLY A 169 ALA A 182 1 14 HELIX 9 AA9 SER A 190 CYS A 197 1 8 HELIX 10 AB1 ASN A 225 THR A 235 1 11 HELIX 11 AB2 SER A 242 LYS A 246 5 5 HELIX 12 AB3 ARG A 250 LEU A 255 5 6 HELIX 13 AB4 ASP A 258 GLN A 266 1 9 HELIX 14 AB5 LYS A 267 VAL A 269 5 3 HELIX 15 AB6 MET A 270 ASP A 278 1 9 HELIX 16 AB7 LYS A 306 ILE A 327 1 22 HELIX 17 AB8 ASP A 357 SER A 374 1 18 HELIX 18 AB9 GLY A 408 TYR A 421 1 14 HELIX 19 AC1 SER A 429 ASN A 436 1 8 HELIX 20 AC2 PRO A 438 TYR A 440 5 3 SHEET 1 AA1 5 ASP A 92 ALA A 97 0 SHEET 2 AA1 5 ALA A 100 ARG A 106 -1 O LEU A 104 N ASP A 92 SHEET 3 AA1 5 PHE A 35 SER A 49 -1 N VAL A 42 O TRP A 105 SHEET 4 AA1 5 ARG A 142 GLY A 158 -1 O VAL A 156 N PHE A 35 SHEET 5 AA1 5 SER A 163 ILE A 168 -1 O LEU A 166 N LEU A 155 SHEET 1 AA2 7 ASP A 92 ALA A 97 0 SHEET 2 AA2 7 ALA A 100 ARG A 106 -1 O LEU A 104 N ASP A 92 SHEET 3 AA2 7 PHE A 35 SER A 49 -1 N VAL A 42 O TRP A 105 SHEET 4 AA2 7 ARG A 142 GLY A 158 -1 O VAL A 156 N PHE A 35 SHEET 5 AA2 7 VAL A 187 LEU A 189 1 O ILE A 188 N LEU A 147 SHEET 6 AA2 7 GLN A 210 LEU A 218 -1 O VAL A 215 N VAL A 187 SHEET 7 AA2 7 ILE A 202 VAL A 207 -1 N GLU A 203 O ASN A 216 SHEET 1 AA3 5 GLN A 331 MET A 337 0 SHEET 2 AA3 5 CYS A 342 PHE A 348 -1 O LEU A 345 N LYS A 334 SHEET 3 AA3 5 GLU A 288 PHE A 301 -1 N THR A 293 O PHE A 348 SHEET 4 AA3 5 ILE A 379 HIS A 398 -1 O THR A 381 N MET A 300 SHEET 5 AA3 5 ARG A 401 ILE A 407 -1 O GLU A 403 N VAL A 396 SHEET 1 AA4 7 GLN A 331 MET A 337 0 SHEET 2 AA4 7 CYS A 342 PHE A 348 -1 O LEU A 345 N LYS A 334 SHEET 3 AA4 7 GLU A 288 PHE A 301 -1 N THR A 293 O PHE A 348 SHEET 4 AA4 7 ILE A 379 HIS A 398 -1 O THR A 381 N MET A 300 SHEET 5 AA4 7 VAL A 425 ASP A 428 1 O THR A 426 N ILE A 384 SHEET 6 AA4 7 LEU A 459 TYR A 462 -1 O TYR A 460 N CYS A 427 SHEET 7 AA4 7 PHE A 442 GLU A 444 -1 N LYS A 443 O GLN A 461 LINK C ACE A 0 N MET A 1 1555 1555 1.33 LINK C ALA A 252 N CME A 253 1555 1555 1.35 LINK C CME A 253 N THR A 254 1555 1555 1.35 LINK OD1 ASP A 47 CA CA A 502 1555 1555 2.20 LINK O ILE A 48 CA CA A 502 1555 1555 2.78 LINK OD2 ASP A 99 CA CA A 502 1555 1555 2.39 LINK CA CA A 502 O HOH A 848 1555 1555 2.67 CISPEP 1 ARG A 33 PRO A 34 0 0.17 SITE 1 AC1 27 ASP A 47 ILE A 48 SER A 49 GLY A 50 SITE 2 AC1 27 PHE A 51 THR A 52 ALA A 97 GLY A 98 SITE 3 AC1 27 ASP A 99 PHE A 296 PHE A 336 PHE A 338 SITE 4 AC1 27 LEU A 345 VAL A 406 VAL A 411 ASN A 412 SITE 5 AC1 27 ALA A 415 ARG A 416 GLY A 452 CA A 502 SITE 6 AC1 27 HOH A 739 HOH A 741 HOH A 846 HOH A 852 SITE 7 AC1 27 HOH A 870 HOH A 929 HOH A 997 SITE 1 AC2 5 ASP A 47 ILE A 48 ASP A 99 APC A 501 SITE 2 AC2 5 HOH A 848 SITE 1 AC3 3 LYS A 95 VAL A 167 HOH A 838 CRYST1 99.651 99.651 96.522 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010035 0.005794 0.000000 0.00000 SCALE2 0.000000 0.011587 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010360 0.00000 HETATM 1 C ACE A 0 63.432 13.330 24.785 1.00 62.24 C ANISOU 1 C ACE A 0 7428 8316 7904 886 -1605 192 C HETATM 2 O ACE A 0 64.006 14.221 24.160 1.00 64.20 O ANISOU 2 O ACE A 0 7597 8592 8204 851 -1586 128 O HETATM 3 CH3 ACE A 0 63.676 13.142 26.276 1.00 65.37 C ANISOU 3 CH3 ACE A 0 7879 8749 8209 903 -1707 230 C