HEADER STRUCTURAL PROTEIN 20-FEB-14 4P0D TITLE THE T6 BACKBONE PILIN OF SEROTYPE M6 STREPTOCOCCUS PYOGENES HAS A TITLE 2 MODULAR THREE-DOMAIN STRUCTURE DECORATED WITH VARIABLE LOOPS AND TITLE 3 EXTENSIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRYPSIN-RESISTANT SURFACE T6 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: T6 ANTIGEN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PYOGENES SEROTYPE M6; SOURCE 3 ORGANISM_TAXID: 286636; SOURCE 4 STRAIN: ATCC BAA-946 / MGAS10394; SOURCE 5 ATCC: BAA-946; SOURCE 6 GENE: TEE6, M6_SPY0160; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PPROEXHTA KEYWDS IG-LIKE FOLDISOPEPTIDE BONDSORTASE MOTIFGRAM-POSITIVE PILI, KEYWDS 2 STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.G.YOUNG,N.J.MORELAND,J.M.LOH,A.BELL,P.ATATOA-CARR,T.PROFT,E.N.BAKER REVDAT 2 20-DEC-23 4P0D 1 LINK REVDAT 1 27-AUG-14 4P0D 0 JRNL AUTH P.G.YOUNG,N.J.MORELAND,J.M.LOH,A.BELL,P.ATATOA CARR,T.PROFT, JRNL AUTH 2 E.N.BAKER JRNL TITL STRUCTURAL CONSERVATION, VARIABILITY, AND IMMUNOGENICITY OF JRNL TITL 2 THE T6 BACKBONE PILIN OF SEROTYPE M6 STREPTOCOCCUS PYOGENES. JRNL REF INFECT.IMMUN. V. 82 2949 2014 JRNL REFN ESSN 1098-5522 JRNL PMID 24778112 JRNL DOI 10.1128/IAI.01706-14 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.6 REMARK 3 NUMBER OF REFLECTIONS : 36383 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1834 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1722 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 59.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.4160 REMARK 3 BIN FREE R VALUE SET COUNT : 87 REMARK 3 BIN FREE R VALUE : 0.4790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3472 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 441 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.50000 REMARK 3 B22 (A**2) : 0.50000 REMARK 3 B33 (A**2) : -1.63000 REMARK 3 B12 (A**2) : 0.25000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.193 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.170 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.124 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.356 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3571 ; 0.008 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3290 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4865 ; 1.256 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7595 ; 0.706 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 475 ; 6.133 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 126 ;33.339 ;26.111 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 566 ;11.817 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;15.819 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 588 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4087 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 740 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1902 ; 1.120 ; 2.236 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1901 ; 1.115 ; 2.235 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2376 ; 1.831 ; 3.338 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4P0D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000200414. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 6.2 - 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : DOUBLE SI WITH SAGITTALY BENT REMARK 200 SECOND CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 0.2.8, XSCALE REMARK 200 DATA SCALING SOFTWARE : SCALA 2.5.2, AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36565 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 24.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.1 REMARK 200 DATA REDUNDANCY : 18.20 REMARK 200 R MERGE (I) : 0.15200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 57.9 REMARK 200 DATA REDUNDANCY IN SHELL : 17.40 REMARK 200 R MERGE FOR SHELL (I) : 0.93900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.2 REMARK 200 STARTING MODEL: PDB ENTRY 4K8W REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.2 M NAKPO4 PH 6.4, 2 % PEG 400, 0.1 REMARK 280 M IMIDAZOLE, 20 MM IMIDAZOLE, PH 6.2, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 42.11000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 42.11000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 42.11000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 64 REMARK 465 ASN A 65 REMARK 465 ASN A 159 REMARK 465 ILE A 160 REMARK 465 ASP A 161 REMARK 465 SER A 162 REMARK 465 LYS A 163 REMARK 465 SER A 164 REMARK 465 GLY A 335 REMARK 465 ASN A 336 REMARK 465 ASN A 435 REMARK 465 SER A 436 REMARK 465 GLU A 515 REMARK 465 LEU A 516 REMARK 465 PRO A 517 REMARK 465 SER A 518 REMARK 465 THR A 519 REMARK 465 GLY A 520 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 35 N CG CD CE NZ REMARK 470 GLN A 40 CG CD OE1 NE2 REMARK 470 GLU A 76 CG CD OE1 OE2 REMARK 470 GLN A 88 CG CD OE1 NE2 REMARK 470 LYS A 101 CG CD CE NZ REMARK 470 LYS A 103 CG CD CE NZ REMARK 470 ARG A 122 CZ NH1 NH2 REMARK 470 GLU A 152 CG CD OE1 OE2 REMARK 470 LYS A 158 CG CD CE NZ REMARK 470 ASN A 165 CG OD1 ND2 REMARK 470 LYS A 216 CE NZ REMARK 470 ASN A 238 CG OD1 ND2 REMARK 470 GLU A 305 CG CD OE1 OE2 REMARK 470 ASN A 309 ND2 REMARK 470 LYS A 378 CG CD CE NZ REMARK 470 LYS A 387 CG CD CE NZ REMARK 470 LYS A 400 CD CE NZ REMARK 470 LYS A 404 CG CD CE NZ REMARK 470 LYS A 410 CG CD CE NZ REMARK 470 LYS A 445 CG CD CE NZ REMARK 470 ASN A 446 CG OD1 ND2 REMARK 470 ASP A 450 CG OD1 OD2 REMARK 470 ASN A 451 CG OD1 ND2 REMARK 470 ASN A 473 CG OD1 ND2 REMARK 470 ASP A 474 CG OD1 OD2 REMARK 470 LYS A 476 CG CD CE NZ REMARK 470 LYS A 484 CG CD CE NZ REMARK 470 ASP A 488 CG OD1 OD2 REMARK 470 LYS A 494 CG CD CE NZ REMARK 470 ASN A 496 CG OD1 ND2 REMARK 470 GLU A 505 CG CD OE1 OE2 REMARK 470 ASN A 510 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 183 CG ASN A 309 1.26 REMARK 500 NZ LYS A 356 CG ASN A 510 1.27 REMARK 500 NZ LYS A 183 OD1 ASN A 309 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 138 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 138 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 70 -68.93 -95.64 REMARK 500 VAL A 192 -120.51 55.41 REMARK 500 ASN A 271 -127.98 49.79 REMARK 500 ASN A 272 52.99 -102.73 REMARK 500 ASN A 309 -166.25 -105.37 REMARK 500 LYS A 310 92.80 -164.09 REMARK 500 ASN A 318 69.19 -152.09 REMARK 500 ASP A 326 19.22 -143.65 REMARK 500 LYS A 362 15.84 58.08 REMARK 500 SER A 495 -150.32 -159.23 REMARK 500 LEU A 513 -72.49 -68.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1033 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A1044 DISTANCE = 6.49 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 604 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 113 O REMARK 620 2 SER A 113 OG 76.2 REMARK 620 3 THR A 116 O 75.7 112.1 REMARK 620 4 THR A 116 OG1 85.0 157.9 73.3 REMARK 620 5 HOH A 782 O 97.2 81.6 161.8 89.6 REMARK 620 6 HOH A 786 O 171.7 99.6 99.7 100.5 89.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 604 DBREF 4P0D A -1 520 UNP P18481 TEE6_STRP6 21 508 SEQADV 4P0D SER A -2 UNP P18481 EXPRESSION TAG SEQADV 4P0D GLY A 304 UNP P18481 GLU 292 ENGINEERED MUTATION SEQRES 1 A 489 SER LEU SER LYS ASP ASP THR ALA GLN LEU LYS ILE THR SEQRES 2 A 489 ASN ILE GLU GLY GLY PRO THR VAL THR LEU TYR LYS ILE SEQRES 3 A 489 GLY GLU GLY VAL TYR ASN THR ASN GLY ASP SER PHE ILE SEQRES 4 A 489 ASN PHE LYS TYR ALA GLU GLY VAL SER LEU THR GLU THR SEQRES 5 A 489 GLY PRO THR SER GLN GLU ILE THR THR ILE ALA ASN GLY SEQRES 6 A 489 ILE ASN THR GLY LYS ILE LYS PRO PHE SER THR GLU ASN SEQRES 7 A 489 VAL SER ILE SER ASN GLY THR ALA THR TYR ASN ALA ARG SEQRES 8 A 489 GLY ALA SER VAL TYR ILE ALA LEU LEU THR GLY ALA THR SEQRES 9 A 489 ASP GLY ARG THR TYR ASN PRO ILE LEU LEU ALA ALA SER SEQRES 10 A 489 TYR ASN GLY GLU GLY ASN LEU VAL THR LYS ASN ILE ASP SEQRES 11 A 489 SER LYS SER ASN TYR LEU TYR GLY GLN THR SER VAL ALA SEQRES 12 A 489 LYS SER SER LEU PRO SER ILE THR LYS LYS VAL THR GLY SEQRES 13 A 489 THR ILE ASP ASP VAL ASN LYS LYS THR THR SER LEU GLY SEQRES 14 A 489 SER VAL LEU SER TYR SER LEU THR PHE GLU LEU PRO SER SEQRES 15 A 489 TYR THR LYS GLU ALA VAL ASN LYS THR VAL TYR VAL SER SEQRES 16 A 489 ASP ASN MET SER GLU GLY LEU THR PHE ASN PHE ASN SER SEQRES 17 A 489 LEU THR VAL GLU TRP LYS GLY LYS MET ALA ASN ILE THR SEQRES 18 A 489 GLU ASP GLY SER VAL MET VAL GLU ASN THR LYS ILE GLY SEQRES 19 A 489 ILE ALA LYS GLU VAL ASN ASN GLY PHE ASN LEU SER PHE SEQRES 20 A 489 ILE TYR ASP SER LEU GLU SER ILE SER PRO ASN ILE SER SEQRES 21 A 489 TYR LYS ALA VAL VAL ASN ASN LYS ALA ILE VAL GLY GLY SEQRES 22 A 489 GLU GLY ASN PRO ASN LYS ALA GLU PHE PHE TYR SER ASN SEQRES 23 A 489 ASN PRO THR LYS GLY ASN THR TYR ASP ASN LEU ASP LYS SEQRES 24 A 489 LYS PRO ASP LYS GLY ASN GLY ILE THR SER LYS GLU ASP SEQRES 25 A 489 SER LYS ILE VAL TYR THR TYR GLN ILE ALA PHE ARG LYS SEQRES 26 A 489 VAL ASP SER VAL SER LYS THR PRO LEU ILE GLY ALA ILE SEQRES 27 A 489 PHE GLY VAL TYR ASP THR SER ASN LYS LEU ILE ASP ILE SEQRES 28 A 489 VAL THR THR ASN LYS ASN GLY TYR ALA ILE SER THR GLN SEQRES 29 A 489 VAL SER SER GLY LYS TYR LYS ILE LYS GLU LEU LYS ALA SEQRES 30 A 489 PRO LYS GLY TYR SER LEU ASN THR GLU THR TYR GLU ILE SEQRES 31 A 489 THR ALA ASN TRP VAL THR ALA THR VAL LYS THR SER ALA SEQRES 32 A 489 ASN SER LYS SER THR THR TYR THR SER ASP LYS ASN LYS SEQRES 33 A 489 ALA THR ASP ASN SER GLU GLN VAL GLY TRP LEU LYS ASN SEQRES 34 A 489 GLY ILE PHE TYR SER ILE ASP SER ARG PRO THR GLY ASN SEQRES 35 A 489 ASP VAL LYS GLU ALA TYR ILE GLU SER THR LYS ALA LEU SEQRES 36 A 489 THR ASP GLY THR THR PHE SER LYS SER ASN GLU GLY SER SEQRES 37 A 489 GLY THR VAL LEU LEU GLU THR ASP ILE PRO ASN THR LYS SEQRES 38 A 489 LEU GLY GLU LEU PRO SER THR GLY HET IOD A 601 1 HET IOD A 602 1 HET IOD A 603 1 HET CA A 604 1 HETNAM IOD IODIDE ION HETNAM CA CALCIUM ION FORMUL 2 IOD 3(I 1-) FORMUL 5 CA CA 2+ FORMUL 6 HOH *441(H2 O) HELIX 1 AA1 THR A 86 GLY A 100 1 15 HELIX 2 AA2 TYR A 280 GLU A 284 5 5 HELIX 3 AA3 ASP A 444 SER A 452 5 9 HELIX 4 AA4 ASP A 467 ARG A 469 5 3 SHEET 1 AA1 3 ALA A 117 ARG A 122 0 SHEET 2 AA1 3 THR A 38 THR A 44 -1 N LEU A 41 O TYR A 119 SHEET 3 AA1 3 GLN A 170 VAL A 173 1 O GLN A 170 N LYS A 42 SHEET 1 AA2 3 PHE A 69 TYR A 74 0 SHEET 2 AA2 3 THR A 51 TYR A 62 -1 N VAL A 61 O ASN A 71 SHEET 3 AA2 3 SER A 106 VAL A 110 -1 O GLU A 108 N LEU A 54 SHEET 1 AA3 4 PHE A 69 TYR A 74 0 SHEET 2 AA3 4 THR A 51 TYR A 62 -1 N VAL A 61 O ASN A 71 SHEET 3 AA3 4 SER A 125 THR A 132 -1 O THR A 132 N THR A 51 SHEET 4 AA3 4 ILE A 143 ALA A 147 -1 O LEU A 145 N TYR A 127 SHEET 1 AA4 2 THR A 139 TYR A 140 0 SHEET 2 AA4 2 SER A 176 SER A 177 -1 O SER A 177 N THR A 139 SHEET 1 AA5 5 SER A 180 THR A 186 0 SHEET 2 AA5 5 VAL A 202 GLU A 210 -1 O SER A 204 N THR A 186 SHEET 3 AA5 5 ASN A 289 VAL A 296 -1 O ALA A 294 N LEU A 203 SHEET 4 AA5 5 LEU A 233 TRP A 244 -1 N GLU A 243 O ASN A 289 SHEET 5 AA5 5 LYS A 247 MET A 248 -1 O LYS A 247 N TRP A 244 SHEET 1 AA6 2 ILE A 189 ASP A 191 0 SHEET 2 AA6 2 LYS A 194 THR A 196 -1 O LYS A 194 N ASP A 191 SHEET 1 AA7 7 ASN A 250 ILE A 251 0 SHEET 2 AA7 7 SER A 256 VAL A 259 -1 O MET A 258 N ASN A 250 SHEET 3 AA7 7 THR A 262 GLU A 269 -1 O GLY A 265 N VAL A 257 SHEET 4 AA7 7 GLY A 273 PHE A 278 -1 O ASN A 275 N LYS A 268 SHEET 5 AA7 7 VAL A 223 ASN A 228 -1 N VAL A 225 O LEU A 276 SHEET 6 AA7 7 ALA A 311 SER A 316 -1 O PHE A 314 N TYR A 224 SHEET 7 AA7 7 ILE A 338 ASP A 343 -1 O ASP A 343 N ALA A 311 SHEET 1 AA8 2 ASN A 307 PRO A 308 0 SHEET 2 AA8 2 ILE A 346 VAL A 347 -1 O VAL A 347 N ASN A 307 SHEET 1 AA9 3 TYR A 390 ILE A 392 0 SHEET 2 AA9 3 GLN A 351 ASP A 358 -1 N PHE A 354 O ALA A 391 SHEET 3 AA9 3 THR A 501 LEU A 503 1 O VAL A 502 N GLN A 351 SHEET 1 AB1 3 TYR A 390 ILE A 392 0 SHEET 2 AB1 3 GLN A 351 ASP A 358 -1 N PHE A 354 O ALA A 391 SHEET 3 AB1 3 ILE A 508 ASN A 510 1 O ILE A 508 N ARG A 355 SHEET 1 AB2 4 LEU A 379 THR A 384 0 SHEET 2 AB2 4 ILE A 369 ASP A 374 -1 N VAL A 372 O ILE A 380 SHEET 3 AB2 4 GLY A 399 LYS A 407 -1 O LEU A 406 N ILE A 369 SHEET 4 AB2 4 TYR A 419 ALA A 423 -1 O ALA A 423 N GLY A 399 SHEET 1 AB3 2 VAL A 430 THR A 432 0 SHEET 2 AB3 2 PHE A 492 LYS A 494 -1 O SER A 493 N LYS A 431 SHEET 1 AB4 4 THR A 440 THR A 442 0 SHEET 2 AB4 4 LYS A 476 SER A 482 -1 O TYR A 479 N THR A 442 SHEET 3 AB4 4 GLY A 456 LYS A 459 -1 N LEU A 458 O LYS A 476 SHEET 4 AB4 4 ILE A 462 SER A 465 -1 O TYR A 464 N TRP A 457 LINK O SER A 113 CA CA A 604 1555 1555 2.59 LINK OG SER A 113 CA CA A 604 1555 1555 2.34 LINK O THR A 116 CA CA A 604 1555 1555 2.73 LINK OG1 THR A 116 CA CA A 604 1555 1555 2.55 LINK CA CA A 604 O HOH A 782 1555 1555 2.89 LINK CA CA A 604 O HOH A 786 1555 1555 2.35 SITE 1 AC1 1 THR A 215 SITE 1 AC2 2 ASN A 236 VAL A 295 SITE 1 AC3 1 THR A 422 SITE 1 AC4 4 SER A 113 THR A 116 HOH A 782 HOH A 786 CRYST1 104.240 104.240 84.220 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009593 0.005539 0.000000 0.00000 SCALE2 0.000000 0.011077 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011874 0.00000