HEADER TRANSFERASE/TRANSFERASE INHIBITOR 21-FEB-14 4P0V TITLE CRYSTAL STRUCTURE OF HUMAN FARNESYL DIPHOSPHOATE SYNTHASE IN COMPLEX TITLE 2 WITH ZOLEDRONATE AND TAXODIONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FARNESYL PYROPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FPS, (2E,6E)-FARNESYL DIPHOSPHATE SYNTHASE, COMPND 5 DIMETHYLALLYLTRANSTRANSFERASE, FARNESYL DIPHOSPHATE SYNTHASE, COMPND 6 GERANYLTRANSTRANSFERASE; COMPND 7 EC: 2.5.1.10, 2.5.1.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FDPS, FPS, KIAA1293; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HUMAN, FPPS, INHIBITOR, COMPLEX, SYNTHASE, TRANSFERASE-TRANSFERASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.L.LIU,E.OLDFIELD REVDAT 4 27-DEC-23 4P0V 1 REMARK LINK REVDAT 3 04-DEC-19 4P0V 1 REMARK REVDAT 2 06-SEP-17 4P0V 1 SOURCE JRNL REMARK DBREF REVDAT 1 02-JUL-14 4P0V 0 JRNL AUTH Y.L.LIU,S.LINDERT,W.ZHU,K.WANG,J.A.MCCAMMON,E.OLDFIELD JRNL TITL TAXODIONE AND ARENARONE INHIBIT FARNESYL DIPHOSPHATE JRNL TITL 2 SYNTHASE BY BINDING TO THE ISOPENTENYL DIPHOSPHATE SITE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 111 E2530 2014 JRNL REFN ESSN 1091-6490 JRNL PMID 24927548 JRNL DOI 10.1073/PNAS.1409061111 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 79.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 16931 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.293 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 855 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1175 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE SET COUNT : 64 REMARK 3 BIN FREE R VALUE : 0.3300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2806 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 32 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.394 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.304 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.224 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.598 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.897 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2906 ; 0.014 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2776 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3945 ; 1.575 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6376 ; 0.929 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 430 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3270 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 670 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1383 ; 4.098 ; 5.413 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1382 ; 4.096 ; 5.410 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1727 ; 5.749 ; 8.112 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4P0V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000200426. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 300 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17015 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 79.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.7800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2M SODIUM POTASSIUM PHOSPHATE, 25% REMARK 280 GLYCEROL, PH 5.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.52650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 56.07150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 56.07150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 16.76325 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 56.07150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 56.07150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 50.28975 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 56.07150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.07150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 16.76325 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 56.07150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.07150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 50.28975 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 33.52650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -84.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -33.52650 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 7 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 58 22.64 83.94 REMARK 500 GLN A 77 58.69 -93.05 REMARK 500 VAL A 124 -65.68 -108.15 REMARK 500 VAL A 183 98.77 -69.83 REMARK 500 PHE A 206 -55.22 -128.42 REMARK 500 THR A 260 -1.45 -140.49 REMARK 500 GLU A 296 -51.91 -27.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 31 GLU A 32 141.11 REMARK 500 MET A 33 GLY A 34 123.33 REMARK 500 GLY A 34 HIS A 35 136.41 REMARK 500 VAL A 183 ASP A 184 135.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 103 OD2 REMARK 620 2 ASP A 107 OD2 77.9 REMARK 620 3 ZOL A 401 O16 88.3 143.9 REMARK 620 4 ZOL A 401 O12 80.3 68.3 76.6 REMARK 620 5 HOH A 530 O 162.4 88.7 96.2 84.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 405 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 103 OD1 REMARK 620 2 ASP A 107 OD2 79.8 REMARK 620 3 ZOL A 401 O12 89.7 73.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 404 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 243 OD2 REMARK 620 2 ZOL A 401 O17 83.4 REMARK 620 3 ZOL A 401 O11 89.4 74.0 REMARK 620 4 HOH A 509 O 168.9 85.5 88.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1WO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 405 DBREF 4P0V A 7 353 UNP P14324 FPPS_HUMAN 73 419 SEQRES 1 A 347 SER ASP VAL TYR ALA GLN GLU LYS GLN ASP PHE VAL GLN SEQRES 2 A 347 HIS PHE SER GLN ILE VAL ARG VAL LEU THR GLU ASP GLU SEQRES 3 A 347 MET GLY HIS PRO GLU ILE GLY ASP ALA ILE ALA ARG LEU SEQRES 4 A 347 LYS GLU VAL LEU GLU TYR ASN ALA ILE GLY GLY LYS TYR SEQRES 5 A 347 ASN ARG GLY LEU THR VAL VAL VAL ALA PHE ARG GLU LEU SEQRES 6 A 347 VAL GLU PRO ARG LYS GLN ASP ALA ASP SER LEU GLN ARG SEQRES 7 A 347 ALA TRP THR VAL GLY TRP CYS VAL GLU LEU LEU GLN ALA SEQRES 8 A 347 PHE PHE LEU VAL ALA ASP ASP ILE MET ASP SER SER LEU SEQRES 9 A 347 THR ARG ARG GLY GLN ILE CYS TRP TYR GLN LYS PRO GLY SEQRES 10 A 347 VAL GLY LEU ASP ALA ILE ASN ASP ALA ASN LEU LEU GLU SEQRES 11 A 347 ALA CYS ILE TYR ARG LEU LEU LYS LEU TYR CYS ARG GLU SEQRES 12 A 347 GLN PRO TYR TYR LEU ASN LEU ILE GLU LEU PHE LEU GLN SEQRES 13 A 347 SER SER TYR GLN THR GLU ILE GLY GLN THR LEU ASP LEU SEQRES 14 A 347 LEU THR ALA PRO GLN GLY ASN VAL ASP LEU VAL ARG PHE SEQRES 15 A 347 THR GLU LYS ARG TYR LYS SER ILE VAL LYS TYR LYS THR SEQRES 16 A 347 ALA PHE TYR SER PHE TYR LEU PRO ILE ALA ALA ALA MET SEQRES 17 A 347 TYR MET ALA GLY ILE ASP GLY GLU LYS GLU HIS ALA ASN SEQRES 18 A 347 ALA LYS LYS ILE LEU LEU GLU MET GLY GLU PHE PHE GLN SEQRES 19 A 347 ILE GLN ASP ASP TYR LEU ASP LEU PHE GLY ASP PRO SER SEQRES 20 A 347 VAL THR GLY LYS ILE GLY THR ASP ILE GLN ASP ASN LYS SEQRES 21 A 347 CYS SER TRP LEU VAL VAL GLN CYS LEU GLN ARG ALA THR SEQRES 22 A 347 PRO GLU GLN TYR GLN ILE LEU LYS GLU ASN TYR GLY GLN SEQRES 23 A 347 LYS GLU ALA GLU LYS VAL ALA ARG VAL LYS ALA LEU TYR SEQRES 24 A 347 GLU GLU LEU ASP LEU PRO ALA VAL PHE LEU GLN TYR GLU SEQRES 25 A 347 GLU ASP SER TYR SER HIS ILE MET ALA LEU ILE GLU GLN SEQRES 26 A 347 TYR ALA ALA PRO LEU PRO PRO ALA VAL PHE LEU GLY LEU SEQRES 27 A 347 ALA ARG LYS ILE TYR LYS ARG ARG LYS HET ZOL A 401 16 HET 1WO A 402 23 HET MG A 403 1 HET MG A 404 1 HET MG A 405 1 HETNAM ZOL ZOLEDRONIC ACID HETNAM 1WO (5BETA)-11-HYDROXYABIETA-7,9(11),13-TRIENE-6,12-DIONE HETNAM MG MAGNESIUM ION HETSYN ZOL (1-HYDROXY-2-IMIDAZOL-1-YLETHYLIDENE)DIPHOSPHONIC ACID HETSYN 1WO TAXODIONE FORMUL 2 ZOL C5 H10 N2 O7 P2 FORMUL 3 1WO C20 H26 O3 FORMUL 4 MG 3(MG 2+) FORMUL 7 HOH *32(H2 O) HELIX 1 AA1 ASP A 8 HIS A 20 1 13 HELIX 2 AA2 HIS A 20 ASP A 31 1 12 HELIX 3 AA3 HIS A 35 GLU A 37 5 3 HELIX 4 AA4 ILE A 38 ALA A 53 1 16 HELIX 5 AA5 TYR A 58 VAL A 72 1 15 HELIX 6 AA6 GLU A 73 GLN A 77 5 5 HELIX 7 AA7 ASP A 78 ASP A 107 1 30 HELIX 8 AA8 TRP A 118 LYS A 121 5 4 HELIX 9 AA9 VAL A 124 LEU A 126 5 3 HELIX 10 AB1 ASP A 127 ARG A 148 1 22 HELIX 11 AB2 TYR A 152 THR A 177 1 26 HELIX 12 AB3 THR A 189 THR A 201 1 13 HELIX 13 AB4 THR A 201 PHE A 206 1 6 HELIX 14 AB5 PHE A 206 ALA A 217 1 12 HELIX 15 AB6 GLY A 221 GLY A 250 1 30 HELIX 16 AB7 ASP A 251 GLY A 256 1 6 HELIX 17 AB8 SER A 268 ALA A 278 1 11 HELIX 18 AB9 THR A 279 TYR A 290 1 12 HELIX 19 AC1 GLU A 294 LEU A 308 1 15 HELIX 20 AC2 ASP A 309 ALA A 333 1 25 HELIX 21 AC3 PRO A 337 TYR A 349 1 13 SHEET 1 AA1 2 THR A 111 ARG A 112 0 SHEET 2 AA1 2 GLN A 115 ILE A 116 -1 O GLN A 115 N ARG A 112 LINK OD2 ASP A 103 MG MG A 403 1555 1555 2.08 LINK OD1 ASP A 103 MG MG A 405 1555 1555 2.04 LINK OD2 ASP A 107 MG MG A 403 1555 1555 2.27 LINK OD2 ASP A 107 MG MG A 405 1555 1555 2.09 LINK OD2 ASP A 243 MG MG A 404 1555 1555 2.28 LINK O16 ZOL A 401 MG MG A 403 1555 1555 2.12 LINK O12 ZOL A 401 MG MG A 403 1555 1555 2.30 LINK O17 ZOL A 401 MG MG A 404 1555 1555 2.20 LINK O11 ZOL A 401 MG MG A 404 1555 1555 2.21 LINK O12 ZOL A 401 MG MG A 405 1555 1555 2.18 LINK MG MG A 403 O HOH A 530 1555 1555 2.10 LINK MG MG A 404 O HOH A 509 1555 1555 2.26 CISPEP 1 ALA A 334 PRO A 335 0 -5.34 SITE 1 AC1 16 ASP A 103 ASP A 107 ARG A 112 LYS A 200 SITE 2 AC1 16 THR A 201 GLN A 240 ASP A 243 LYS A 257 SITE 3 AC1 16 1WO A 402 MG A 403 MG A 404 MG A 405 SITE 4 AC1 16 HOH A 509 HOH A 510 HOH A 513 HOH A 530 SITE 1 AC2 16 GLY A 56 LYS A 57 TYR A 58 ARG A 60 SITE 2 AC2 16 GLU A 93 GLN A 96 ARG A 112 ARG A 113 SITE 3 AC2 16 PHE A 239 ASP A 243 LYS A 257 LYS A 353 SITE 4 AC2 16 ZOL A 401 HOH A 514 HOH A 517 HOH A 531 SITE 1 AC3 5 ASP A 103 ASP A 107 ZOL A 401 MG A 405 SITE 2 AC3 5 HOH A 530 SITE 1 AC4 3 ASP A 243 ZOL A 401 HOH A 509 SITE 1 AC5 4 ASP A 103 ASP A 107 ZOL A 401 MG A 403 CRYST1 112.143 112.143 67.053 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008917 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008917 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014914 0.00000