data_4P1D # _entry.id 4P1D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4P1D pdb_00004p1d 10.2210/pdb4p1d/pdb WWPDB D_1000200495 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr . _pdbx_database_status.entry_id 4P1D _pdbx_database_status.recvd_initial_deposition_date 2014-02-26 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs . _pdbx_database_status.methods_development_category . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ferraroni, M.' 1 'Bazzicalupi, C.' 2 'Gratteri, P.' 3 # _citation.abstract . _citation.abstract_id_CAS . _citation.book_id_ISBN . _citation.book_publisher . _citation.book_publisher_city . _citation.book_title . _citation.coordinate_linkage . _citation.country ? _citation.database_id_Medline . _citation.details . _citation.id primary _citation.journal_abbrev 'to be published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full . _citation.journal_issue . _citation.journal_volume . _citation.language . _citation.page_first . _citation.page_last . _citation.title 'Crystal Structure of the complex of a bimolecular human telomeric DNA with Coptisine' _citation.year . _citation.database_id_CSD . _citation.pdbx_database_id_DOI . _citation.pdbx_database_id_PubMed . _citation.unpublished_flag . # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ferraroni, M.' 1 ? primary 'Bazzicalupi, C.' 2 ? primary 'Gratteri, P.' 3 ? primary 'Bilia, A.R.' 4 ? primary 'Sissi, C.' 5 ? # _cell.length_a 41.567 _cell.length_b 41.567 _cell.length_c 66.157 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 4P1D _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4P1D _symmetry.cell_setting . _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M . # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'telomeric DNA' 3773.462 2 ? ? ? ? 2 non-polymer syn 'POTASSIUM ION' 39.098 2 ? ? ? ? 3 non-polymer syn '6,7-dihydro[1,3]dioxolo[4,5-g][1,3]dioxolo[7,8]isoquino[3,2-a]isoquinolin-5-ium' 320.319 1 ? ? ? ? 4 water nat water 18.015 28 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DT)(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG)(DG)(DG)(DT)' _entity_poly.pdbx_seq_one_letter_code_can TAGGGTTAGGGT _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DA n 1 3 DG n 1 4 DG n 1 5 DG n 1 6 DT n 1 7 DT n 1 8 DA n 1 9 DG n 1 10 DG n 1 11 DG n 1 12 DT n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 12 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4P1D _struct_ref.pdbx_db_accession 4P1D _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4P1D A 1 ? 12 ? 4P1D 1 ? 12 ? 1 12 2 1 4P1D B 1 ? 12 ? 4P1D 13 ? 24 ? 13 24 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 KPT non-polymer . '6,7-dihydro[1,3]dioxolo[4,5-g][1,3]dioxolo[7,8]isoquino[3,2-a]isoquinolin-5-ium' Coptisine 'C19 H14 N O4 1' 320.319 # _exptl.absorpt_coefficient_mu . _exptl.absorpt_correction_T_max . _exptl.absorpt_correction_T_min . _exptl.absorpt_correction_type . _exptl.absorpt_process_details . _exptl.entry_id 4P1D _exptl.crystals_number 1 _exptl.details . _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details . # _exptl_crystal.colour . _exptl_crystal.density_diffrn . _exptl_crystal.density_Matthews 1.89 _exptl_crystal.density_method . _exptl_crystal.density_percent_sol 35.03 _exptl_crystal.description . _exptl_crystal.F_000 . _exptl_crystal.id 1 _exptl_crystal.preparation . _exptl_crystal.size_max . _exptl_crystal.size_mid . _exptl_crystal.size_min . _exptl_crystal.size_rad . _exptl_crystal.colour_lustre . _exptl_crystal.colour_modifier . _exptl_crystal.colour_primary . _exptl_crystal.density_meas . _exptl_crystal.density_meas_esd . _exptl_crystal.density_meas_gt . _exptl_crystal.density_meas_lt . _exptl_crystal.density_meas_temp . _exptl_crystal.density_meas_temp_esd . _exptl_crystal.density_meas_temp_gt . _exptl_crystal.density_meas_temp_lt . _exptl_crystal.pdbx_crystal_image_url . _exptl_crystal.pdbx_crystal_image_format . _exptl_crystal.pdbx_mosaicity . _exptl_crystal.pdbx_mosaicity_esd . # _exptl_crystal_grow.apparatus . _exptl_crystal_grow.atmosphere . _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details . _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref . _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure . _exptl_crystal_grow.pressure_esd . _exptl_crystal_grow.seeding . _exptl_crystal_grow.seeding_ref . _exptl_crystal_grow.temp 296 _exptl_crystal_grow.temp_details . _exptl_crystal_grow.temp_esd . _exptl_crystal_grow.time . _exptl_crystal_grow.pdbx_details 'Sodium Fluoride, Potassium Fluoride, Cacodylate, MPD' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.ambient_environment . _diffrn.ambient_temp 100 _diffrn.ambient_temp_details . _diffrn.ambient_temp_esd . _diffrn.crystal_id 1 _diffrn.crystal_support . _diffrn.crystal_treatment . _diffrn.details . _diffrn.id 1 _diffrn.ambient_pressure . _diffrn.ambient_pressure_esd . _diffrn.ambient_pressure_gt . _diffrn.ambient_pressure_lt . _diffrn.ambient_temp_gt . _diffrn.ambient_temp_lt . # _diffrn_detector.details . _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean . _diffrn_detector.dtime . _diffrn_detector.pdbx_frames_total . _diffrn_detector.pdbx_collection_time_total . _diffrn_detector.pdbx_collection_date 2012-07-14 # _diffrn_radiation.collimation . _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge . _diffrn_radiation.inhomogeneity . _diffrn_radiation.monochromator 'Double crystal Si(111), horizontally focusing' _diffrn_radiation.polarisn_norm . _diffrn_radiation.polarisn_ratio . _diffrn_radiation.probe . _diffrn_radiation.type . _diffrn_radiation.xray_symbol . _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list . _diffrn_radiation.pdbx_wavelength . _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer . _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0020 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current . _diffrn_source.details . _diffrn_source.diffrn_id 1 _diffrn_source.power . _diffrn_source.size . _diffrn_source.source SYNCHROTRON _diffrn_source.target . _diffrn_source.type 'ESRF BEAMLINE ID29' _diffrn_source.voltage . _diffrn_source.take-off_angle . _diffrn_source.pdbx_wavelength_list 1.0020 _diffrn_source.pdbx_wavelength . _diffrn_source.pdbx_synchrotron_beamline ID29 _diffrn_source.pdbx_synchrotron_site ESRF # _reflns.B_iso_Wilson_estimate 28.609 _reflns.entry_id 4P1D _reflns.data_reduction_details . _reflns.data_reduction_method . _reflns.d_resolution_high 1.550 _reflns.d_resolution_low 35.2 _reflns.details . _reflns.limit_h_max . _reflns.limit_h_min . _reflns.limit_k_max . _reflns.limit_k_min . _reflns.limit_l_max . _reflns.limit_l_min . _reflns.number_all . _reflns.number_obs 8899 _reflns.observed_criterion . _reflns.observed_criterion_F_max . _reflns.observed_criterion_F_min . _reflns.observed_criterion_I_max . _reflns.observed_criterion_I_min . _reflns.observed_criterion_sigma_F . _reflns.observed_criterion_sigma_I -3.000 _reflns.percent_possible_obs 99.600 _reflns.R_free_details . _reflns.Rmerge_F_all . _reflns.Rmerge_F_obs 0.997 _reflns.Friedel_coverage . _reflns.number_gt . _reflns.threshold_expression . _reflns.pdbx_redundancy 18.7 _reflns.pdbx_Rmerge_I_obs 0.113 _reflns.pdbx_Rmerge_I_all . _reflns.pdbx_Rsym_value . _reflns.pdbx_netI_over_av_sigmaI . _reflns.pdbx_netI_over_sigmaI 15.220 _reflns.pdbx_res_netI_over_av_sigmaI_2 . _reflns.pdbx_res_netI_over_sigmaI_2 . _reflns.pdbx_chi_squared 0.971 _reflns.pdbx_scaling_rejects . _reflns.pdbx_d_res_high_opt . _reflns.pdbx_d_res_low_opt . _reflns.pdbx_d_res_opt_method . _reflns.phase_calculation_details . _reflns.pdbx_Rrim_I_all 0.117 _reflns.pdbx_Rpim_I_all . _reflns.pdbx_d_opt . _reflns.pdbx_number_measured_all 166071 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.550 1.640 . 2.080 . 18967 1397 . 1368 97.900 . . 0.996 . 0.740 . . . . . . . . 13.9 . . . . 0.767 . 0 1 1 1.640 1.760 . 4.950 . 27666 1316 . 1316 100.000 . . 1.000 . 0.322 . . . . . . . . . . . . . 0.330 . 0 2 1 1.760 1.900 . 6.320 . 24931 1254 . 1254 100.000 . . 0.996 . 0.565 . . . . . . . . . . . . . 0.580 . 0 3 1 1.900 2.080 . 10.520 . 23763 1137 . 1137 100.000 . . 0.994 . 0.395 . . . . . . . . . . . . . 0.405 . 0 4 1 2.080 2.320 . 16.610 . 20578 1044 . 1044 100.000 . . 0.997 . 0.253 . . . . . . . . . . . . . 0.260 . 0 5 1 2.320 2.680 . 24.290 . 18664 934 . 934 100.000 . . 0.998 . 0.123 . . . . . . . . . . . . . 0.127 . 0 6 1 2.680 3.280 . 31.920 . 14568 805 . 804 99.900 . . 0.995 . 0.087 . . . . . . . . . . . . . 0.090 . 0 7 1 3.280 4.610 . 38.530 . 10922 648 . 647 99.800 . . 0.998 . 0.080 . . . . . . . . . . . . . 0.083 . 0 8 1 4.610 . . 39.450 . 6012 396 . 395 99.700 . . 0.998 . 0.073 . . . . . . . . . . . . . 0.076 . 0 9 1 # _refine.aniso_B[1][1] . _refine.aniso_B[1][2] . _refine.aniso_B[1][3] . _refine.aniso_B[2][2] . _refine.aniso_B[2][3] . _refine.aniso_B[3][3] . _refine.B_iso_max 49.240 _refine.B_iso_mean 28.9632 _refine.B_iso_min 16.140 _refine.correlation_coeff_Fo_to_Fc 0.9620 _refine.correlation_coeff_Fo_to_Fc_free 0.9600 _refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT U VALUES : REFINED INDIVIDUALLY' _refine.diff_density_max . _refine.diff_density_max_esd . _refine.diff_density_min . _refine.diff_density_min_esd . _refine.diff_density_rms . _refine.diff_density_rms_esd . _refine.entry_id 4P1D _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details . _refine.ls_abs_structure_Flack . _refine.ls_abs_structure_Flack_esd . _refine.ls_abs_structure_Rogers . _refine.ls_abs_structure_Rogers_esd . _refine.ls_d_res_high 1.5500 _refine.ls_d_res_low 35.2000 _refine.ls_extinction_coef . _refine.ls_extinction_coef_esd . _refine.ls_extinction_expression . _refine.ls_extinction_method . _refine.ls_goodness_of_fit_all . _refine.ls_goodness_of_fit_all_esd . _refine.ls_goodness_of_fit_obs . _refine.ls_goodness_of_fit_obs_esd . _refine.ls_hydrogen_treatment . _refine.ls_matrix_type . _refine.ls_number_constraints . _refine.ls_number_parameters . _refine.ls_number_reflns_all . _refine.ls_number_reflns_obs 8880 _refine.ls_number_reflns_R_free 444 _refine.ls_number_reflns_R_work 8436 _refine.ls_number_restraints . _refine.ls_percent_reflns_obs 99.5600 _refine.ls_percent_reflns_R_free 5.0000 _refine.ls_R_factor_all . _refine.ls_R_factor_obs 0.2331 _refine.ls_R_factor_R_free 0.2585 _refine.ls_R_factor_R_free_error . _refine.ls_R_factor_R_free_error_details . _refine.ls_R_factor_R_work 0.2316 _refine.ls_R_Fsqd_factor_obs . _refine.ls_R_I_factor_obs . _refine.ls_redundancy_reflns_all . _refine.ls_redundancy_reflns_obs . _refine.ls_restrained_S_all . _refine.ls_restrained_S_obs . _refine.ls_shift_over_esd_max . _refine.ls_shift_over_esd_mean . _refine.ls_structure_factor_coef . _refine.ls_weighting_details . _refine.ls_weighting_scheme . _refine.ls_wR_factor_all . _refine.ls_wR_factor_obs . _refine.ls_wR_factor_R_free 0.2813 _refine.ls_wR_factor_R_work 0.2407 _refine.occupancy_max . _refine.occupancy_min . _refine.overall_SU_B . _refine.overall_SU_ML 0.0890 _refine.overall_SU_R_Cruickshank_DPI 0.1094 _refine.overall_SU_R_free 0.1048 _refine.overall_FOM_free_R_set . _refine.overall_FOM_work_R_set 0.7267 _refine.solvent_model_details MASK _refine.solvent_model_param_bsol . _refine.solvent_model_param_ksol . _refine.ls_R_factor_gt . _refine.ls_goodness_of_fit_gt . _refine.ls_goodness_of_fit_ref . _refine.ls_shift_over_su_max . _refine.ls_shift_over_su_max_lt . _refine.ls_shift_over_su_mean . _refine.ls_shift_over_su_mean_lt . _refine.pdbx_ls_sigma_I . _refine.pdbx_ls_sigma_F . _refine.pdbx_ls_sigma_Fsqd . _refine.pdbx_data_cutoff_high_absF . _refine.pdbx_data_cutoff_high_rms_absF . _refine.pdbx_data_cutoff_low_absF . _refine.pdbx_isotropic_thermal_model . _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 1K8P _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case . _refine.pdbx_overall_ESU_R 0.1090 _refine.pdbx_overall_ESU_R_Free 0.1050 _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.pdbx_real_space_R . _refine.pdbx_density_correlation . _refine.pdbx_pd_number_of_powder_patterns . _refine.pdbx_pd_number_of_points . _refine.pdbx_pd_meas_number_of_points . _refine.pdbx_pd_proc_ls_prof_R_factor . _refine.pdbx_pd_proc_ls_prof_wR_factor . _refine.pdbx_pd_Marquardt_correlation_coeff . _refine.pdbx_pd_Fsqrd_R_factor . _refine.pdbx_pd_ls_matrix_band_width . _refine.pdbx_overall_phase_error . _refine.pdbx_overall_SU_R_free_Cruickshank_DPI . _refine.pdbx_overall_SU_R_free_Blow_DPI . _refine.pdbx_overall_SU_R_Blow_DPI . _refine.pdbx_TLS_residual_ADP_flag . _refine.pdbx_diffrn_id 1 # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.5500 _refine_hist.d_res_low 35.2000 _refine_hist.pdbx_number_atoms_ligand 26 _refine_hist.number_atoms_solvent 28 _refine_hist.number_atoms_total 556 _refine_hist.pdbx_number_residues_total 24 _refine_hist.pdbx_B_iso_mean_ligand 20.26 _refine_hist.pdbx_B_iso_mean_solvent 36.67 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 502 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' . 0.009 0.014 593 . r_bond_refined_d . . 'X-RAY DIFFRACTION' . 2.472 1.695 916 . r_angle_refined_deg . . 'X-RAY DIFFRACTION' . 0.129 0.200 72 . ;CHIRAL-CENTER RESTRAINTS (A''3) ; . . 'X-RAY DIFFRACTION' . 0.018 0.020 292 . r_gen_planes_refined . . 'X-RAY DIFFRACTION' . 2.582 2.833 591 . ;SIDE-CHAIN BOND REFINED ATOMS (A''2) ; . . # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.5500 _refine_ls_shell.d_res_low 1.5900 _refine_ls_shell.number_reflns_all 609 _refine_ls_shell.number_reflns_obs . _refine_ls_shell.number_reflns_R_free 30 _refine_ls_shell.number_reflns_R_work 579 _refine_ls_shell.percent_reflns_obs 96.3600 _refine_ls_shell.percent_reflns_R_free . _refine_ls_shell.R_factor_all . _refine_ls_shell.R_factor_obs . _refine_ls_shell.R_factor_R_free 0.5970 _refine_ls_shell.R_factor_R_free_error . _refine_ls_shell.R_factor_R_work 0.4940 _refine_ls_shell.redundancy_reflns_all . _refine_ls_shell.redundancy_reflns_obs . _refine_ls_shell.wR_factor_all . _refine_ls_shell.wR_factor_obs . _refine_ls_shell.wR_factor_R_free . _refine_ls_shell.wR_factor_R_work . _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error . # _struct.entry_id 4P1D _struct.title 'Structure of the complex of a bimolecular human telomeric DNA with Coptisine' _struct.pdbx_model_details . _struct.pdbx_formula_weight . _struct.pdbx_formula_weight_method . _struct.pdbx_model_type_details . _struct.pdbx_CASP_flag . # _struct_keywords.entry_id 4P1D _struct_keywords.text 'DRUG-DNA COMPLEX, G-QUADRUPLEX, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 4 ? # _struct_biol.details 'biological unit is the same as asymmetric unit' _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id . _struct_biol.pdbx_formula_weight . _struct_biol.pdbx_formula_weight_method . _struct_biol.pdbx_aggregation_state . _struct_biol.pdbx_assembly_method . # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 3 O6 ? ? ? 1_555 D K . K ? ? A DG 3 A K 102 1_555 ? ? ? ? ? ? ? 2.615 ? ? metalc2 metalc ? ? A DG 4 O6 ? ? ? 1_555 C K . K ? ? A DG 4 A K 101 1_555 ? ? ? ? ? ? ? 2.916 ? ? metalc3 metalc ? ? A DG 4 O6 ? ? ? 1_555 D K . K ? ? A DG 4 A K 102 1_555 ? ? ? ? ? ? ? 2.874 ? ? metalc4 metalc ? ? A DG 5 O6 ? ? ? 1_555 C K . K ? ? A DG 5 A K 101 1_555 ? ? ? ? ? ? ? 2.638 ? ? metalc5 metalc ? ? A DG 9 O6 ? ? ? 1_555 D K . K ? ? A DG 9 A K 102 1_555 ? ? ? ? ? ? ? 2.715 ? ? metalc6 metalc ? ? A DG 10 O6 ? ? ? 1_555 C K . K ? ? A DG 10 A K 101 1_555 ? ? ? ? ? ? ? 2.888 ? ? metalc7 metalc ? ? A DG 10 O6 ? ? ? 1_555 D K . K ? ? A DG 10 A K 102 1_555 ? ? ? ? ? ? ? 2.866 ? ? metalc8 metalc ? ? A DG 11 O6 ? ? ? 1_555 C K . K ? ? A DG 11 A K 101 1_555 ? ? ? ? ? ? ? 2.810 ? ? metalc9 metalc ? ? C K . K ? ? ? 1_555 B DG 4 O6 ? ? A K 101 B DG 16 1_555 ? ? ? ? ? ? ? 2.836 ? ? metalc10 metalc ? ? C K . K ? ? ? 1_555 B DG 5 O6 ? ? A K 101 B DG 17 1_555 ? ? ? ? ? ? ? 2.642 ? ? metalc11 metalc ? ? C K . K ? ? ? 1_555 B DG 10 O6 ? ? A K 101 B DG 22 1_555 ? ? ? ? ? ? ? 2.946 ? ? metalc12 metalc ? ? C K . K ? ? ? 1_555 B DG 11 O6 ? ? A K 101 B DG 23 1_555 ? ? ? ? ? ? ? 2.698 ? ? metalc13 metalc ? ? D K . K ? ? ? 1_555 B DG 3 O6 ? ? A K 102 B DG 15 1_555 ? ? ? ? ? ? ? 2.662 ? ? metalc14 metalc ? ? D K . K ? ? ? 1_555 B DG 4 O6 ? ? A K 102 B DG 16 1_555 ? ? ? ? ? ? ? 2.888 ? ? metalc15 metalc ? ? D K . K ? ? ? 1_555 B DG 9 O6 ? ? A K 102 B DG 21 1_555 ? ? ? ? ? ? ? 2.715 ? ? metalc16 metalc ? ? D K . K ? ? ? 1_555 B DG 10 O6 ? ? A K 102 B DG 22 1_555 ? ? ? ? ? ? ? 2.877 ? ? hydrog1 hydrog ? ? A DT 1 N3 ? ? ? 1_555 B DA 2 N1 ? ? A DT 1 B DA 14 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog2 hydrog ? ? A DT 1 O2 ? ? ? 1_555 B DA 2 N6 ? ? A DT 1 B DA 14 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog3 hydrog ? ? A DA 2 N1 ? ? ? 1_555 B DT 1 N3 ? ? A DA 2 B DT 13 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog4 hydrog ? ? A DA 2 N6 ? ? ? 1_555 B DT 1 O2 ? ? A DA 2 B DT 13 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog5 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DG 9 O6 ? ? A DG 3 A DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DG 9 N7 ? ? A DG 3 A DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 3 N7 ? ? ? 1_555 B DG 9 N2 ? ? A DG 3 B DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DG 9 N1 ? ? A DG 3 B DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DG 10 O6 ? ? A DG 4 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DG 10 N7 ? ? A DG 4 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DG 4 N7 ? ? ? 1_555 B DG 10 N2 ? ? A DG 4 B DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DG 10 N1 ? ? A DG 4 B DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A DG 5 N1 ? ? ? 1_555 A DG 11 O6 ? ? A DG 5 A DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A DG 5 N2 ? ? ? 1_555 A DG 11 N7 ? ? A DG 5 A DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A DG 5 N7 ? ? ? 1_555 B DG 11 N2 ? ? A DG 5 B DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DG 11 N1 ? ? A DG 5 B DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DG 3 O6 ? ? A DG 9 B DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DG 3 N7 ? ? A DG 9 B DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DG 4 O6 ? ? A DG 10 B DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DG 4 N7 ? ? A DG 10 B DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? A DG 11 N1 ? ? ? 1_555 B DG 5 O6 ? ? A DG 11 B DG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? A DG 11 N2 ? ? ? 1_555 B DG 5 N7 ? ? A DG 11 B DG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? B DG 3 N1 ? ? ? 1_555 B DG 9 O6 ? ? B DG 15 B DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? B DG 3 N2 ? ? ? 1_555 B DG 9 N7 ? ? B DG 15 B DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? B DG 4 N2 ? ? ? 1_555 B DT 6 O4 ? ? B DG 16 B DT 18 1_555 ? ? ? ? ? ? 'DG-DT MISPAIR' ? ? ? hydrog26 hydrog ? ? B DG 4 N1 ? ? ? 1_555 B DG 10 O6 ? ? B DG 16 B DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog27 hydrog ? ? B DG 4 N2 ? ? ? 1_555 B DG 10 N7 ? ? B DG 16 B DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog28 hydrog ? ? B DG 5 N1 ? ? ? 1_555 B DG 11 O6 ? ? B DG 17 B DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog29 hydrog ? ? B DG 5 N2 ? ? ? 1_555 B DG 11 N7 ? ? B DG 17 B DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A K 101 ? 9 'binding site for residue K A 101' AC2 Software A K 102 ? 9 'binding site for residue K A 102' AC3 Software A KPT 103 ? 9 'binding site for residue KPT A 103' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 DG A 4 ? DG A 4 . ? 1_555 ? 2 AC1 9 DG A 5 ? DG A 5 . ? 1_555 ? 3 AC1 9 DG A 10 ? DG A 10 . ? 1_555 ? 4 AC1 9 DG A 11 ? DG A 11 . ? 1_555 ? 5 AC1 9 K D . ? K A 102 . ? 1_555 ? 6 AC1 9 DG B 4 ? DG B 16 . ? 1_555 ? 7 AC1 9 DG B 5 ? DG B 17 . ? 1_555 ? 8 AC1 9 DG B 10 ? DG B 22 . ? 1_555 ? 9 AC1 9 DG B 11 ? DG B 23 . ? 1_555 ? 10 AC2 9 DG A 3 ? DG A 3 . ? 1_555 ? 11 AC2 9 DG A 4 ? DG A 4 . ? 1_555 ? 12 AC2 9 DG A 9 ? DG A 9 . ? 1_555 ? 13 AC2 9 DG A 10 ? DG A 10 . ? 1_555 ? 14 AC2 9 K C . ? K A 101 . ? 1_555 ? 15 AC2 9 DG B 3 ? DG B 15 . ? 1_555 ? 16 AC2 9 DG B 4 ? DG B 16 . ? 1_555 ? 17 AC2 9 DG B 9 ? DG B 21 . ? 1_555 ? 18 AC2 9 DG B 10 ? DG B 22 . ? 1_555 ? 19 AC3 9 DT A 1 ? DT A 1 . ? 3_444 ? 20 AC3 9 DA A 2 ? DA A 2 . ? 3_444 ? 21 AC3 9 DG A 5 ? DG A 5 . ? 1_555 ? 22 AC3 9 DG A 11 ? DG A 11 . ? 1_555 ? 23 AC3 9 DT A 12 ? DT A 12 . ? 1_555 ? 24 AC3 9 DT B 1 ? DT B 13 . ? 3_444 ? 25 AC3 9 DA B 2 ? DA B 14 . ? 3_444 ? 26 AC3 9 DG B 5 ? DG B 17 . ? 1_555 ? 27 AC3 9 DG B 11 ? DG B 23 . ? 1_555 ? # _atom_sites.entry_id 4P1D _atom_sites.fract_transf_matrix[1][1] 0.024058 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024058 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015116 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C K N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT T A . n A 1 2 DA 2 2 2 DA A A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DG 5 5 5 DG G A . n A 1 6 DT 6 6 6 DT T A . n A 1 7 DT 7 7 7 DT T A . n A 1 8 DA 8 8 8 DA A A . n A 1 9 DG 9 9 9 DG G A . n A 1 10 DG 10 10 10 DG G A . n A 1 11 DG 11 11 11 DG G A . n A 1 12 DT 12 12 12 DT T A . n B 1 1 DT 1 13 13 DT T B . n B 1 2 DA 2 14 14 DA A B . n B 1 3 DG 3 15 15 DG G B . n B 1 4 DG 4 16 16 DG G B . n B 1 5 DG 5 17 17 DG G B . n B 1 6 DT 6 18 18 DT T B . n B 1 7 DT 7 19 19 DT T B . n B 1 8 DA 8 20 20 DA A B . n B 1 9 DG 9 21 21 DG G B . n B 1 10 DG 10 22 22 DG G B . n B 1 11 DG 11 23 23 DG G B . n B 1 12 DT 12 24 24 DT T B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 K 1 101 1 K K A . D 2 K 1 102 1 K K A . E 3 KPT 1 103 1 KPT KPT A . F 4 HOH 1 201 15 HOH HOH A . F 4 HOH 2 202 28 HOH HOH A . F 4 HOH 3 203 17 HOH HOH A . F 4 HOH 4 204 18 HOH HOH A . F 4 HOH 5 205 5 HOH HOH A . F 4 HOH 6 206 6 HOH HOH A . F 4 HOH 7 207 10 HOH HOH A . F 4 HOH 8 208 22 HOH HOH A . F 4 HOH 9 209 27 HOH HOH A . G 4 HOH 1 101 11 HOH HOH B . G 4 HOH 2 102 25 HOH HOH B . G 4 HOH 3 103 21 HOH HOH B . G 4 HOH 4 104 4 HOH HOH B . G 4 HOH 5 105 8 HOH HOH B . G 4 HOH 6 106 9 HOH HOH B . G 4 HOH 7 107 13 HOH HOH B . G 4 HOH 8 108 16 HOH HOH B . G 4 HOH 9 109 1 HOH HOH B . G 4 HOH 10 110 3 HOH HOH B . G 4 HOH 11 111 23 HOH HOH B . G 4 HOH 12 112 2 HOH HOH B . G 4 HOH 13 113 7 HOH HOH B . G 4 HOH 14 114 12 HOH HOH B . G 4 HOH 15 115 14 HOH HOH B . G 4 HOH 16 116 19 HOH HOH B . G 4 HOH 17 117 20 HOH HOH B . G 4 HOH 18 118 24 HOH HOH B . G 4 HOH 19 119 26 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1930 ? 1 MORE -6 ? 1 'SSA (A^2)' 4460 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 4 ? A DG 4 ? 1_555 74.8 ? 2 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 74.5 ? 3 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 87.5 ? 4 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 133.4 ? 5 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 67.9 ? 6 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 76.9 ? 7 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? B DG 3 ? B DG 15 ? 1_555 119.8 ? 8 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? B DG 3 ? B DG 15 ? 1_555 150.0 ? 9 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? B DG 3 ? B DG 15 ? 1_555 73.2 ? 10 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? B DG 3 ? B DG 15 ? 1_555 85.1 ? 11 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? B DG 4 ? B DG 16 ? 1_555 151.0 ? 12 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? B DG 4 ? B DG 16 ? 1_555 102.2 ? 13 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? B DG 4 ? B DG 16 ? 1_555 134.5 ? 14 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? B DG 4 ? B DG 16 ? 1_555 66.6 ? 15 O6 ? B DG 3 ? B DG 15 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? B DG 4 ? B DG 16 ? 1_555 77.3 ? 16 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? B DG 9 ? B DG 21 ? 1_555 74.0 ? 17 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? B DG 9 ? B DG 21 ? 1_555 133.6 ? 18 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? B DG 9 ? B DG 21 ? 1_555 115.7 ? 19 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? B DG 9 ? B DG 21 ? 1_555 152.4 ? 20 O6 ? B DG 3 ? B DG 15 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? B DG 9 ? B DG 21 ? 1_555 76.3 ? 21 O6 ? B DG 4 ? B DG 16 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? B DG 9 ? B DG 21 ? 1_555 89.3 ? 22 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? B DG 10 ? B DG 22 ? 1_555 85.2 ? 23 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? B DG 10 ? B DG 22 ? 1_555 66.9 ? 24 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? B DG 10 ? B DG 22 ? 1_555 151.0 ? 25 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? B DG 10 ? B DG 22 ? 1_555 104.0 ? 26 O6 ? B DG 3 ? B DG 15 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? B DG 10 ? B DG 22 ? 1_555 135.7 ? 27 O6 ? B DG 4 ? B DG 16 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? B DG 10 ? B DG 22 ? 1_555 67.7 ? 28 O6 ? B DG 9 ? B DG 21 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? B DG 10 ? B DG 22 ? 1_555 77.0 ? 29 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? A DG 5 ? A DG 5 ? 1_555 73.7 ? 30 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 67.0 ? 31 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 91.1 ? 32 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 127.4 ? 33 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 71.3 ? 34 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 75.7 ? 35 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 4 ? B DG 16 ? 1_555 102.5 ? 36 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 4 ? B DG 16 ? 1_555 156.9 ? 37 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 4 ? B DG 16 ? 1_555 67.0 ? 38 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 4 ? B DG 16 ? 1_555 95.2 ? 39 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 5 ? B DG 17 ? 1_555 157.9 ? 40 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 5 ? B DG 17 ? 1_555 118.4 ? 41 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 5 ? B DG 17 ? 1_555 127.3 ? 42 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 5 ? B DG 17 ? 1_555 74.6 ? 43 O6 ? B DG 4 ? B DG 16 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 5 ? B DG 17 ? 1_555 73.5 ? 44 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 10 ? B DG 22 ? 1_555 65.5 ? 45 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 10 ? B DG 22 ? 1_555 127.3 ? 46 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 10 ? B DG 22 ? 1_555 101.7 ? 47 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 10 ? B DG 22 ? 1_555 161.5 ? 48 O6 ? B DG 4 ? B DG 16 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 10 ? B DG 22 ? 1_555 67.4 ? 49 O6 ? B DG 5 ? B DG 17 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 10 ? B DG 22 ? 1_555 93.6 ? 50 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 11 ? B DG 23 ? 1_555 92.0 ? 51 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 11 ? B DG 23 ? 1_555 77.3 ? 52 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 11 ? B DG 23 ? 1_555 158.3 ? 53 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 11 ? B DG 23 ? 1_555 116.5 ? 54 O6 ? B DG 4 ? B DG 16 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 11 ? B DG 23 ? 1_555 125.8 ? 55 O6 ? B DG 5 ? B DG 17 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 11 ? B DG 23 ? 1_555 74.3 ? 56 O6 ? B DG 10 ? B DG 22 ? 1_555 K ? C K . ? A K 101 ? 1_555 O6 ? B DG 11 ? B DG 23 ? 1_555 72.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-03-18 2 'Structure model' 1 1 2017-09-27 3 'Structure model' 1 2 2023-09-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Derived calculations' 3 2 'Structure model' Other 4 2 'Structure model' 'Refinement description' 5 2 'Structure model' 'Source and taxonomy' 6 3 'Structure model' 'Data collection' 7 3 'Structure model' 'Database references' 8 3 'Structure model' 'Derived calculations' 9 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' pdbx_database_status 3 2 'Structure model' pdbx_entity_src_syn 4 2 'Structure model' pdbx_struct_assembly 5 2 'Structure model' pdbx_struct_conn_angle 6 2 'Structure model' pdbx_struct_oper_list 7 2 'Structure model' software 8 3 'Structure model' chem_comp_atom 9 3 'Structure model' chem_comp_bond 10 3 'Structure model' database_2 11 3 'Structure model' diffrn_radiation_wavelength 12 3 'Structure model' pdbx_initial_refinement_model 13 3 'Structure model' refine_hist 14 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_id_CSD' 2 2 'Structure model' '_pdbx_database_status.pdb_format_compatible' 3 2 'Structure model' '_pdbx_entity_src_syn.pdbx_alt_source_flag' 4 2 'Structure model' '_pdbx_struct_assembly.oligomeric_details' 5 2 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 6 3 'Structure model' '_database_2.pdbx_DOI' 7 3 'Structure model' '_database_2.pdbx_database_accession' 8 3 'Structure model' '_refine_hist.pdbx_number_atoms_nucleic_acid' 9 3 'Structure model' '_refine_hist.pdbx_number_atoms_protein' 10 3 'Structure model' '_struct_conn.pdbx_dist_value' 11 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 12 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 13 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 14 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 15 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 16 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 17 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 18 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 19 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 20 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 21 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 22 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 23 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 24 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' # _phasing.method MR # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data reduction' . . . . . . . . . . . XDS . . . . 1 ? 'data scaling' . . . . . . . . . . . XSCALE . . . 2.1.4 2 ? 'data extraction' . . . . . . . . . . . PDB_EXTRACT . . . 3.14 3 ? phasing . . . . . . . . . . . PHASER . . . . 4 ? refinement . . . . . . . . . . . REFMAC . . . 5.8.0049 5 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C2 A DT 1 ? ? O2 A DT 1 ? ? 1.274 1.220 0.054 0.008 N 2 1 N1 A DT 6 ? ? C2 A DT 6 ? ? 1.428 1.376 0.052 0.008 N 3 1 N3 A DT 6 ? ? C4 A DT 6 ? ? 1.329 1.382 -0.053 0.008 N 4 1 C5 A DT 6 ? ? C6 A DT 6 ? ? 1.384 1.339 0.045 0.007 N 5 1 C5 A DT 7 ? ? C6 A DT 7 ? ? 1.386 1.339 0.047 0.007 N 6 1 N3 A DT 12 ? ? C4 A DT 12 ? ? 1.327 1.382 -0.055 0.008 N 7 1 C5 A DT 12 ? ? C6 A DT 12 ? ? 1.404 1.339 0.065 0.007 N 8 1 C2 B DT 13 ? ? N3 B DT 13 ? ? 1.303 1.373 -0.070 0.008 N 9 1 C5 B DT 18 ? ? C6 B DT 18 ? ? 1.395 1.339 0.056 0.007 N 10 1 N3 B DT 19 ? ? C4 B DT 19 ? ? 1.332 1.382 -0.050 0.008 N 11 1 C5 B DT 24 ? ? C6 B DT 24 ? ? 1.390 1.339 0.051 0.007 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 97.56 108.00 -10.44 0.70 N 2 1 N1 A DT 1 ? ? C2 A DT 1 ? ? N3 A DT 1 ? ? 120.48 114.60 5.88 0.60 N 3 1 C2 A DT 1 ? ? N3 A DT 1 ? ? C4 A DT 1 ? ? 123.00 127.20 -4.20 0.60 N 4 1 C5 A DT 1 ? ? C4 A DT 1 ? ? O4 A DT 1 ? ? 120.40 124.90 -4.50 0.70 N 5 1 "O5'" A DT 6 ? ? "C5'" A DT 6 ? ? "C4'" A DT 6 ? ? 103.17 109.40 -6.23 0.80 N 6 1 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 110.62 108.30 2.32 0.30 N 7 1 N1 A DT 6 ? ? C2 A DT 6 ? ? N3 A DT 6 ? ? 121.31 114.60 6.71 0.60 N 8 1 C2 A DT 6 ? ? N3 A DT 6 ? ? C4 A DT 6 ? ? 120.09 127.20 -7.11 0.60 N 9 1 N3 A DT 6 ? ? C4 A DT 6 ? ? C5 A DT 6 ? ? 119.37 115.20 4.17 0.60 N 10 1 C5 A DT 6 ? ? C6 A DT 6 ? ? N1 A DT 6 ? ? 116.91 123.70 -6.79 0.60 N 11 1 N3 A DT 6 ? ? C2 A DT 6 ? ? O2 A DT 6 ? ? 117.28 122.30 -5.02 0.60 N 12 1 N1 A DT 7 ? ? C2 A DT 7 ? ? N3 A DT 7 ? ? 122.84 114.60 8.24 0.60 N 13 1 C2 A DT 7 ? ? N3 A DT 7 ? ? C4 A DT 7 ? ? 119.72 127.20 -7.48 0.60 N 14 1 N3 A DT 7 ? ? C4 A DT 7 ? ? C5 A DT 7 ? ? 118.84 115.20 3.64 0.60 N 15 1 N1 A DT 7 ? ? C2 A DT 7 ? ? O2 A DT 7 ? ? 116.29 123.10 -6.81 0.80 N 16 1 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 114.68 108.30 6.38 0.30 N 17 1 N1 A DT 12 ? ? C2 A DT 12 ? ? N3 A DT 12 ? ? 121.46 114.60 6.86 0.60 N 18 1 C2 A DT 12 ? ? N3 A DT 12 ? ? C4 A DT 12 ? ? 119.04 127.20 -8.16 0.60 N 19 1 N3 A DT 12 ? ? C4 A DT 12 ? ? C5 A DT 12 ? ? 122.03 115.20 6.83 0.60 N 20 1 C5 A DT 12 ? ? C6 A DT 12 ? ? N1 A DT 12 ? ? 118.38 123.70 -5.32 0.60 N 21 1 C5 A DT 12 ? ? C4 A DT 12 ? ? O4 A DT 12 ? ? 119.04 124.90 -5.86 0.70 N 22 1 "O4'" B DT 13 ? ? "C1'" B DT 13 ? ? N1 B DT 13 ? ? 97.53 108.00 -10.47 0.70 N 23 1 C6 B DT 13 ? ? N1 B DT 13 ? ? C2 B DT 13 ? ? 118.07 121.30 -3.23 0.50 N 24 1 N1 B DT 13 ? ? C2 B DT 13 ? ? N3 B DT 13 ? ? 123.50 114.60 8.90 0.60 N 25 1 C2 B DT 13 ? ? N3 B DT 13 ? ? C4 B DT 13 ? ? 121.86 127.20 -5.34 0.60 N 26 1 C5 B DT 13 ? ? C6 B DT 13 ? ? N1 B DT 13 ? ? 119.81 123.70 -3.89 0.60 N 27 1 N3 B DT 13 ? ? C2 B DT 13 ? ? O2 B DT 13 ? ? 117.66 122.30 -4.64 0.60 N 28 1 N1 B DT 18 ? ? C2 B DT 18 ? ? N3 B DT 18 ? ? 121.34 114.60 6.74 0.60 N 29 1 C2 B DT 18 ? ? N3 B DT 18 ? ? C4 B DT 18 ? ? 120.25 127.20 -6.95 0.60 N 30 1 N3 B DT 18 ? ? C4 B DT 18 ? ? C5 B DT 18 ? ? 119.36 115.20 4.16 0.60 N 31 1 C5 B DT 18 ? ? C6 B DT 18 ? ? N1 B DT 18 ? ? 119.81 123.70 -3.89 0.60 N 32 1 N1 B DT 18 ? ? C2 B DT 18 ? ? O2 B DT 18 ? ? 117.86 123.10 -5.24 0.80 N 33 1 C5 B DT 18 ? ? C4 B DT 18 ? ? O4 B DT 18 ? ? 118.00 124.90 -6.90 0.70 N 34 1 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? N1 B DT 19 ? ? 111.18 108.30 2.88 0.30 N 35 1 N1 B DT 19 ? ? C2 B DT 19 ? ? N3 B DT 19 ? ? 121.29 114.60 6.69 0.60 N 36 1 C2 B DT 19 ? ? N3 B DT 19 ? ? C4 B DT 19 ? ? 119.58 127.20 -7.62 0.60 N 37 1 N3 B DT 19 ? ? C4 B DT 19 ? ? C5 B DT 19 ? ? 120.83 115.20 5.63 0.60 N 38 1 C5 B DT 19 ? ? C6 B DT 19 ? ? N1 B DT 19 ? ? 119.64 123.70 -4.06 0.60 N 39 1 C5 B DT 19 ? ? C4 B DT 19 ? ? O4 B DT 19 ? ? 117.94 124.90 -6.96 0.70 N 40 1 "O4'" B DT 24 ? ? "C1'" B DT 24 ? ? N1 B DT 24 ? ? 103.15 108.00 -4.85 0.70 N 41 1 N1 B DT 24 ? ? C2 B DT 24 ? ? N3 B DT 24 ? ? 121.48 114.60 6.88 0.60 N 42 1 C2 B DT 24 ? ? N3 B DT 24 ? ? C4 B DT 24 ? ? 121.93 127.20 -5.27 0.60 N 43 1 N1 B DT 24 ? ? C2 B DT 24 ? ? O2 B DT 24 ? ? 116.93 123.10 -6.17 0.80 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DG OP3 O N N 37 DG P P N N 38 DG OP1 O N N 39 DG OP2 O N N 40 DG "O5'" O N N 41 DG "C5'" C N N 42 DG "C4'" C N R 43 DG "O4'" O N N 44 DG "C3'" C N S 45 DG "O3'" O N N 46 DG "C2'" C N N 47 DG "C1'" C N R 48 DG N9 N Y N 49 DG C8 C Y N 50 DG N7 N Y N 51 DG C5 C Y N 52 DG C6 C N N 53 DG O6 O N N 54 DG N1 N N N 55 DG C2 C N N 56 DG N2 N N N 57 DG N3 N N N 58 DG C4 C Y N 59 DG HOP3 H N N 60 DG HOP2 H N N 61 DG "H5'" H N N 62 DG "H5''" H N N 63 DG "H4'" H N N 64 DG "H3'" H N N 65 DG "HO3'" H N N 66 DG "H2'" H N N 67 DG "H2''" H N N 68 DG "H1'" H N N 69 DG H8 H N N 70 DG H1 H N N 71 DG H21 H N N 72 DG H22 H N N 73 DT OP3 O N N 74 DT P P N N 75 DT OP1 O N N 76 DT OP2 O N N 77 DT "O5'" O N N 78 DT "C5'" C N N 79 DT "C4'" C N R 80 DT "O4'" O N N 81 DT "C3'" C N S 82 DT "O3'" O N N 83 DT "C2'" C N N 84 DT "C1'" C N R 85 DT N1 N N N 86 DT C2 C N N 87 DT O2 O N N 88 DT N3 N N N 89 DT C4 C N N 90 DT O4 O N N 91 DT C5 C N N 92 DT C7 C N N 93 DT C6 C N N 94 DT HOP3 H N N 95 DT HOP2 H N N 96 DT "H5'" H N N 97 DT "H5''" H N N 98 DT "H4'" H N N 99 DT "H3'" H N N 100 DT "HO3'" H N N 101 DT "H2'" H N N 102 DT "H2''" H N N 103 DT "H1'" H N N 104 DT H3 H N N 105 DT H71 H N N 106 DT H72 H N N 107 DT H73 H N N 108 DT H6 H N N 109 HOH O O N N 110 HOH H1 H N N 111 HOH H2 H N N 112 K K K N N 113 KPT C36 C N N 114 KPT O4 O N N 115 KPT O3 O N N 116 KPT C18 C Y N 117 KPT C13 C Y N 118 KPT C14 C Y N 119 KPT C17 C Y N 120 KPT C16 C Y N 121 KPT C15 C Y N 122 KPT C12 C Y N 123 KPT C11 C Y N 124 KPT C10 C Y N 125 KPT N N Y N 126 KPT C9 C N N 127 KPT C8 C N N 128 KPT C6 C Y N 129 KPT C5 C Y N 130 KPT C4 C Y N 131 KPT C7 C Y N 132 KPT C3 C Y N 133 KPT C2 C Y N 134 KPT O2 O N N 135 KPT O1 O N N 136 KPT C1 C N N 137 KPT H1 H N N 138 KPT H21 H N N 139 KPT H2 H N N 140 KPT H3 H N N 141 KPT H4 H N N 142 KPT H5 H N N 143 KPT H6 H N N 144 KPT H7 H N N 145 KPT H8 H N N 146 KPT H9 H N N 147 KPT H10 H N N 148 KPT H11 H N N 149 KPT H12 H N N 150 KPT H14 H N N 151 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DG OP3 P sing N N 39 DG OP3 HOP3 sing N N 40 DG P OP1 doub N N 41 DG P OP2 sing N N 42 DG P "O5'" sing N N 43 DG OP2 HOP2 sing N N 44 DG "O5'" "C5'" sing N N 45 DG "C5'" "C4'" sing N N 46 DG "C5'" "H5'" sing N N 47 DG "C5'" "H5''" sing N N 48 DG "C4'" "O4'" sing N N 49 DG "C4'" "C3'" sing N N 50 DG "C4'" "H4'" sing N N 51 DG "O4'" "C1'" sing N N 52 DG "C3'" "O3'" sing N N 53 DG "C3'" "C2'" sing N N 54 DG "C3'" "H3'" sing N N 55 DG "O3'" "HO3'" sing N N 56 DG "C2'" "C1'" sing N N 57 DG "C2'" "H2'" sing N N 58 DG "C2'" "H2''" sing N N 59 DG "C1'" N9 sing N N 60 DG "C1'" "H1'" sing N N 61 DG N9 C8 sing Y N 62 DG N9 C4 sing Y N 63 DG C8 N7 doub Y N 64 DG C8 H8 sing N N 65 DG N7 C5 sing Y N 66 DG C5 C6 sing N N 67 DG C5 C4 doub Y N 68 DG C6 O6 doub N N 69 DG C6 N1 sing N N 70 DG N1 C2 sing N N 71 DG N1 H1 sing N N 72 DG C2 N2 sing N N 73 DG C2 N3 doub N N 74 DG N2 H21 sing N N 75 DG N2 H22 sing N N 76 DG N3 C4 sing N N 77 DT OP3 P sing N N 78 DT OP3 HOP3 sing N N 79 DT P OP1 doub N N 80 DT P OP2 sing N N 81 DT P "O5'" sing N N 82 DT OP2 HOP2 sing N N 83 DT "O5'" "C5'" sing N N 84 DT "C5'" "C4'" sing N N 85 DT "C5'" "H5'" sing N N 86 DT "C5'" "H5''" sing N N 87 DT "C4'" "O4'" sing N N 88 DT "C4'" "C3'" sing N N 89 DT "C4'" "H4'" sing N N 90 DT "O4'" "C1'" sing N N 91 DT "C3'" "O3'" sing N N 92 DT "C3'" "C2'" sing N N 93 DT "C3'" "H3'" sing N N 94 DT "O3'" "HO3'" sing N N 95 DT "C2'" "C1'" sing N N 96 DT "C2'" "H2'" sing N N 97 DT "C2'" "H2''" sing N N 98 DT "C1'" N1 sing N N 99 DT "C1'" "H1'" sing N N 100 DT N1 C2 sing N N 101 DT N1 C6 sing N N 102 DT C2 O2 doub N N 103 DT C2 N3 sing N N 104 DT N3 C4 sing N N 105 DT N3 H3 sing N N 106 DT C4 O4 doub N N 107 DT C4 C5 sing N N 108 DT C5 C7 sing N N 109 DT C5 C6 doub N N 110 DT C7 H71 sing N N 111 DT C7 H72 sing N N 112 DT C7 H73 sing N N 113 DT C6 H6 sing N N 114 HOH O H1 sing N N 115 HOH O H2 sing N N 116 KPT O4 C36 sing N N 117 KPT O3 C36 sing N N 118 KPT C18 O3 sing N N 119 KPT C13 C14 sing Y N 120 KPT C13 C18 sing Y N 121 KPT C17 C18 doub Y N 122 KPT C17 O4 sing N N 123 KPT C16 C17 sing Y N 124 KPT C15 C12 sing Y N 125 KPT C15 C16 doub Y N 126 KPT C12 C13 doub Y N 127 KPT C11 C10 doub Y N 128 KPT C11 C12 sing Y N 129 KPT C10 N sing Y N 130 KPT N C9 sing N N 131 KPT N C14 doub Y N 132 KPT C8 C9 sing N N 133 KPT C6 C5 sing Y N 134 KPT C6 C10 sing N N 135 KPT C5 C8 sing N N 136 KPT C4 C5 doub Y N 137 KPT C7 C6 doub Y N 138 KPT C3 C2 doub Y N 139 KPT C3 C7 sing Y N 140 KPT C2 C4 sing Y N 141 KPT O2 C2 sing N N 142 KPT O1 C3 sing N N 143 KPT C1 O1 sing N N 144 KPT C1 O2 sing N N 145 KPT C36 H1 sing N N 146 KPT C36 H21 sing N N 147 KPT C14 H2 sing N N 148 KPT C16 H3 sing N N 149 KPT C15 H4 sing N N 150 KPT C11 H5 sing N N 151 KPT C9 H6 sing N N 152 KPT C9 H7 sing N N 153 KPT C8 H8 sing N N 154 KPT C8 H9 sing N N 155 KPT C4 H10 sing N N 156 KPT C7 H11 sing N N 157 KPT C1 H12 sing N N 158 KPT C1 H14 sing N N 159 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4P1D 'parallel strands' 4P1D 'mismatched base pair' # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'POTASSIUM ION' K 3 '6,7-dihydro[1,3]dioxolo[4,5-g][1,3]dioxolo[7,8]isoquino[3,2-a]isoquinolin-5-ium' KPT 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1K8P _pdbx_initial_refinement_model.details ? #