HEADER TRANSPORT PROTEIN 26-FEB-14 4P1E TITLE CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM TITLE 2 ESCHERICHIA FERGUSONII (EFER_1530), TARGET EFI-510119, APO OPEN TITLE 3 STRUCTURE, PHASED WITH IODIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRAP DICARBOXYLATE TRANSPORTER, DCTP SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA FERGUSONII; SOURCE 3 ORGANISM_TAXID: 585054; SOURCE 4 STRAIN: ATCC 35469 / DSM 13698 / CDC 0568-73; SOURCE 5 ATCC: ATCC 35469; SOURCE 6 GENE: DCTP, EFER_1530; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS TRAP PERIPLASMIC SOLUTE BINDING FAMILY, ENZYME FUNCTION INITIATIVE, KEYWDS 2 EFI, STRUCTURAL GENOMICS, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,N.F.AL OBAIDI,M.STEAD,J.D.ATTONITO,A.SCOTT GLENN, AUTHOR 2 S.CHOWDHURY,B.EVANS,B.HILLERICH,J.LOVE,R.D.SEIDEL,K.L.WHALEN, AUTHOR 3 J.A.GERLT,S.C.ALMO,ENZYME FUNCTION INITIATIVE (EFI) REVDAT 6 27-DEC-23 4P1E 1 REMARK REVDAT 5 25-DEC-19 4P1E 1 REMARK REVDAT 4 20-SEP-17 4P1E 1 SOURCE KEYWDS JRNL REMARK REVDAT 3 25-FEB-15 4P1E 1 JRNL REVDAT 2 06-AUG-14 4P1E 1 JRNL REVDAT 1 19-MAR-14 4P1E 0 JRNL AUTH M.W.VETTING,N.AL-OBAIDI,S.ZHAO,B.SAN FRANCISCO,J.KIM, JRNL AUTH 2 D.J.WICHELECKI,J.T.BOUVIER,J.O.SOLBIATI,H.VU,X.ZHANG, JRNL AUTH 3 D.A.RODIONOV,J.D.LOVE,B.S.HILLERICH,R.D.SEIDEL,R.J.QUINN, JRNL AUTH 4 A.L.OSTERMAN,J.E.CRONAN,M.P.JACOBSON,J.A.GERLT,S.C.ALMO JRNL TITL EXPERIMENTAL STRATEGIES FOR FUNCTIONAL ANNOTATION AND JRNL TITL 2 METABOLISM DISCOVERY: TARGETED SCREENING OF SOLUTE BINDING JRNL TITL 3 PROTEINS AND UNBIASED PANNING OF METABOLOMES. JRNL REF BIOCHEMISTRY V. 54 909 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 25540822 JRNL DOI 10.1021/BI501388Y REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 32722 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1652 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.9908 - 4.3482 1.00 2859 143 0.2126 0.2195 REMARK 3 2 4.3482 - 3.4519 1.00 2717 143 0.1535 0.2224 REMARK 3 3 3.4519 - 3.0158 1.00 2699 148 0.1838 0.2113 REMARK 3 4 3.0158 - 2.7401 1.00 2624 159 0.1927 0.2517 REMARK 3 5 2.7401 - 2.5438 1.00 2648 158 0.1872 0.2298 REMARK 3 6 2.5438 - 2.3938 1.00 2623 148 0.1745 0.2290 REMARK 3 7 2.3938 - 2.2739 1.00 2632 132 0.1798 0.2323 REMARK 3 8 2.2739 - 2.1750 1.00 2621 137 0.1903 0.2296 REMARK 3 9 2.1750 - 2.0912 0.99 2643 122 0.2048 0.2585 REMARK 3 10 2.0912 - 2.0191 0.98 2597 128 0.2311 0.2685 REMARK 3 11 2.0191 - 1.9560 0.91 2358 118 0.2784 0.3425 REMARK 3 12 1.9560 - 1.9000 0.79 2049 116 0.3167 0.3300 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 2283 REMARK 3 ANGLE : 1.358 3102 REMARK 3 CHIRALITY : 0.074 362 REMARK 3 PLANARITY : 0.007 399 REMARK 3 DIHEDRAL : 13.854 826 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 27 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): 68.3168 56.5922 165.7037 REMARK 3 T TENSOR REMARK 3 T11: 0.1132 T22: 0.1433 REMARK 3 T33: 0.1167 T12: 0.0256 REMARK 3 T13: 0.0357 T23: 0.0075 REMARK 3 L TENSOR REMARK 3 L11: 0.2424 L22: 0.7156 REMARK 3 L33: 0.2528 L12: 0.0565 REMARK 3 L13: -0.1328 L23: -0.2738 REMARK 3 S TENSOR REMARK 3 S11: 0.0569 S12: 0.1115 S13: -0.0271 REMARK 3 S21: -0.2808 S22: -0.0625 S23: -0.0751 REMARK 3 S31: 0.0225 S32: 0.0304 S33: 0.0023 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 106 THROUGH 324 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.0383 47.4777 170.0951 REMARK 3 T TENSOR REMARK 3 T11: 0.0741 T22: 0.0965 REMARK 3 T33: 0.0972 T12: 0.0215 REMARK 3 T13: -0.0138 T23: 0.0126 REMARK 3 L TENSOR REMARK 3 L11: 0.4682 L22: 0.2647 REMARK 3 L33: 0.5628 L12: 0.1772 REMARK 3 L13: 0.1239 L23: 0.1431 REMARK 3 S TENSOR REMARK 3 S11: 0.0580 S12: -0.0364 S13: -0.0624 REMARK 3 S21: 0.0013 S22: -0.0571 S23: 0.0111 REMARK 3 S31: 0.0504 S32: -0.0300 S33: -0.0024 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4P1E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000200498. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32768 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 58.734 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 12.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.14500 REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.57700 REMARK 200 R SYM FOR SHELL (I) : 0.57700 REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: HEXAGONAL BIPYRAMID, 0.15 MM ON A SIDE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (34.8 MG/ML, 10 MM HEPES PH REMARK 280 7.5, 5 MM DTT); RESERVOIR (60 %(V/V) TACSIMATE PH 7.0); SOAK REMARK 280 (THREE MINUTES IN 1 M NAI + RESERVOIR); CRYOPROTECTION (20% REMARK 280 GLYCEROL + RESERVOIR, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 104.23400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.11700 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 52.11700 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 104.23400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS A MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 I IOD A 424 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 523 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 551 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 ILE A 3 REMARK 465 ASN A 4 REMARK 465 THR A 5 REMARK 465 ILE A 6 REMARK 465 SER A 7 REMARK 465 ALA A 8 REMARK 465 LEU A 9 REMARK 465 SER A 10 REMARK 465 LYS A 11 REMARK 465 LEU A 12 REMARK 465 ALA A 13 REMARK 465 CYS A 14 REMARK 465 LEU A 15 REMARK 465 LEU A 16 REMARK 465 PRO A 17 REMARK 465 LEU A 18 REMARK 465 LEU A 19 REMARK 465 MET A 20 REMARK 465 VAL A 21 REMARK 465 ASP A 22 REMARK 465 ALA A 23 REMARK 465 SER A 24 REMARK 465 PHE A 25 REMARK 465 ALA A 26 REMARK 465 SER A 68 REMARK 465 GLY A 69 REMARK 465 ASN A 325 REMARK 465 ALA A 326 REMARK 465 GLU A 327 REMARK 465 ASN A 328 REMARK 465 LEU A 329 REMARK 465 TYR A 330 REMARK 465 PHE A 331 REMARK 465 GLN A 332 REMARK 465 GLY A 333 REMARK 465 HIS A 334 REMARK 465 HIS A 335 REMARK 465 HIS A 336 REMARK 465 HIS A 337 REMARK 465 HIS A 338 REMARK 465 HIS A 339 REMARK 465 HIS A 340 REMARK 465 HIS A 341 REMARK 465 HIS A 342 REMARK 465 HIS A 343 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 36 CG CD1 CD2 REMARK 470 LYS A 44 CG CD CE NZ REMARK 470 LYS A 51 CG CD CE NZ REMARK 470 LYS A 120 CG CD CE NZ REMARK 470 LYS A 137 CG CD CE NZ REMARK 470 LYS A 162 CG CD CE NZ REMARK 470 GLU A 254 CG CD OE1 OE2 REMARK 470 LYS A 310 CG CD CE NZ REMARK 470 LYS A 318 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 605 O HOH A 692 1.34 REMARK 500 OE1 GLN A 157 HZ3 LYS A 227 1.59 REMARK 500 O HOH A 630 O HOH A 677 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 211 CB GLU A 211 CG -0.121 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 86 46.21 -90.96 REMARK 500 ASN A 233 53.58 39.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 653 DISTANCE = 5.91 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 417 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 423 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 426 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 429 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 431 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 435 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 437 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-510119 RELATED DB: TARGETTRACK DBREF 4P1E A 1 325 UNP B7LRA7 B7LRA7_ESCF3 1 325 SEQADV 4P1E ALA A 326 UNP B7LRA7 EXPRESSION TAG SEQADV 4P1E GLU A 327 UNP B7LRA7 EXPRESSION TAG SEQADV 4P1E ASN A 328 UNP B7LRA7 EXPRESSION TAG SEQADV 4P1E LEU A 329 UNP B7LRA7 EXPRESSION TAG SEQADV 4P1E TYR A 330 UNP B7LRA7 EXPRESSION TAG SEQADV 4P1E PHE A 331 UNP B7LRA7 EXPRESSION TAG SEQADV 4P1E GLN A 332 UNP B7LRA7 EXPRESSION TAG SEQADV 4P1E GLY A 333 UNP B7LRA7 EXPRESSION TAG SEQADV 4P1E HIS A 334 UNP B7LRA7 EXPRESSION TAG SEQADV 4P1E HIS A 335 UNP B7LRA7 EXPRESSION TAG SEQADV 4P1E HIS A 336 UNP B7LRA7 EXPRESSION TAG SEQADV 4P1E HIS A 337 UNP B7LRA7 EXPRESSION TAG SEQADV 4P1E HIS A 338 UNP B7LRA7 EXPRESSION TAG SEQADV 4P1E HIS A 339 UNP B7LRA7 EXPRESSION TAG SEQADV 4P1E HIS A 340 UNP B7LRA7 EXPRESSION TAG SEQADV 4P1E HIS A 341 UNP B7LRA7 EXPRESSION TAG SEQADV 4P1E HIS A 342 UNP B7LRA7 EXPRESSION TAG SEQADV 4P1E HIS A 343 UNP B7LRA7 EXPRESSION TAG SEQRES 1 A 343 MET LYS ILE ASN THR ILE SER ALA LEU SER LYS LEU ALA SEQRES 2 A 343 CYS LEU LEU PRO LEU LEU MET VAL ASP ALA SER PHE ALA SEQRES 3 A 343 ALA GLU SER LEU ASN VAL SER THR SER LEU SER PRO ASP SEQRES 4 A 343 ASP PRO ILE TYR LYS GLY LEU GLN SER PHE LYS LYS GLY SEQRES 5 A 343 VAL GLU SER ARG THR ASN GLY GLU VAL LYS ILE LYS LEU SEQRES 6 A 343 PHE SER SER GLY GLN LEU GLY ALA ASP ASN GLU LEU LEU SEQRES 7 A 343 GLN HIS ALA GLN ALA GLY SER ASN VAL GLY VAL VAL VAL SEQRES 8 A 343 ASP GLY ALA ARG LEU ALA GLN PHE VAL PRO GLU PHE ALA SEQRES 9 A 343 ILE ILE PRO ALA PRO PHE VAL PHE LYS ASP TYR THR THR SEQRES 10 A 343 LEU LYS LYS PHE ILE SER SER PRO VAL PHE ALA GLN TRP SEQRES 11 A 343 SER GLU GLN MET SER SER LYS SER GLY LEU THR PRO LEU SEQRES 12 A 343 SER PHE ASN TRP TYR GLN GLY ALA ARG MET LEU VAL THR SEQRES 13 A 343 GLN LYS PRO VAL SER LYS PRO SER ASP LEU ASN GLY VAL SEQRES 14 A 343 ARG VAL ARG ALA LEU GLU ALA PRO VAL THR ILE GLU THR SEQRES 15 A 343 ILE LYS CYS MET GLY GLY SER PRO THR PRO LEU SER TRP SEQRES 16 A 343 SER GLU ILE TYR SER SER ILE GLN THR GLY VAL VAL ASP SEQRES 17 A 343 ALA ALA GLU ALA GLN PRO THR ALA VAL TYR GLY SER LYS SEQRES 18 A 343 LEU TYR GLU ILE THR LYS HIS ILE THR LYS THR ASN HIS SEQRES 19 A 343 ILE HIS LEU MET THR GLY ILE ILE VAL SER GLN LYS TRP SEQRES 20 A 343 LEU SER SER LEU THR ALA GLU GLN GLN THR ILE LEU ARG SEQRES 21 A 343 GLU GLU ALA GLN LYS ASN GLY ASP ILE ALA SER GLU ASN SEQRES 22 A 343 THR ILE LEU ALA GLY ASP LYS MET LEU ASP GLU MET ALA SEQRES 23 A 343 LYS LYS GLY MET THR ILE SER GLU VAL ASP THR GLN PRO SEQRES 24 A 343 PHE ILE ASP GLY CYS ARG TYR VAL PRO GLU LYS LEU GLY SEQRES 25 A 343 LEU SER GLU ALA TYR LYS GLN VAL ASN SER ILE ILE ASN SEQRES 26 A 343 ALA GLU ASN LEU TYR PHE GLN GLY HIS HIS HIS HIS HIS SEQRES 27 A 343 HIS HIS HIS HIS HIS HET IOD A 401 1 HET IOD A 402 1 HET IOD A 403 1 HET IOD A 404 1 HET IOD A 405 1 HET IOD A 406 1 HET IOD A 407 1 HET IOD A 408 1 HET IOD A 409 1 HET IOD A 410 1 HET IOD A 411 1 HET IOD A 412 1 HET IOD A 413 1 HET IOD A 414 1 HET IOD A 415 1 HET IOD A 416 1 HET IOD A 417 1 HET IOD A 418 1 HET IOD A 419 1 HET IOD A 420 1 HET IOD A 421 1 HET IOD A 422 1 HET IOD A 423 1 HET IOD A 424 1 HET IOD A 425 1 HET IOD A 426 1 HET IOD A 427 1 HET IOD A 428 1 HET IOD A 429 1 HET IOD A 430 1 HET IOD A 431 1 HET IOD A 432 1 HET IOD A 433 1 HET IOD A 434 1 HET IOD A 435 1 HET IOD A 436 1 HET IOD A 437 1 HETNAM IOD IODIDE ION FORMUL 2 IOD 37(I 1-) FORMUL 39 HOH *218(H2 O) HELIX 1 AA1 ASP A 40 THR A 57 1 18 HELIX 2 AA2 ALA A 73 ALA A 83 1 11 HELIX 3 AA3 GLY A 93 ALA A 97 1 5 HELIX 4 AA4 GLN A 98 PHE A 99 5 2 HELIX 5 AA5 VAL A 100 ILE A 106 5 7 HELIX 6 AA6 ASP A 114 SER A 123 1 10 HELIX 7 AA7 SER A 124 GLY A 139 1 16 HELIX 8 AA8 LYS A 162 ASN A 167 5 6 HELIX 9 AA9 ALA A 176 GLY A 187 1 12 HELIX 10 AB1 SER A 194 SER A 196 5 3 HELIX 11 AB2 GLU A 197 THR A 204 1 8 HELIX 12 AB3 GLN A 213 SER A 220 1 8 HELIX 13 AB4 LYS A 221 ILE A 225 5 5 HELIX 14 AB5 GLN A 245 LEU A 251 1 7 HELIX 15 AB6 THR A 252 LYS A 287 1 36 HELIX 16 AB7 THR A 297 ARG A 305 1 9 HELIX 17 AB8 TYR A 306 LEU A 311 1 6 HELIX 18 AB9 LEU A 313 ILE A 324 1 12 SHEET 1 AA1 5 VAL A 61 PHE A 66 0 SHEET 2 AA1 5 GLU A 28 SER A 33 1 N VAL A 32 O LYS A 64 SHEET 3 AA1 5 VAL A 87 ASP A 92 1 O GLY A 88 N ASN A 31 SHEET 4 AA1 5 HIS A 236 SER A 244 -1 O ILE A 242 N VAL A 89 SHEET 5 AA1 5 LEU A 140 ALA A 151 -1 N GLN A 149 O LEU A 237 SHEET 1 AA2 4 ALA A 210 ALA A 212 0 SHEET 2 AA2 4 MET A 153 THR A 156 -1 N VAL A 155 O ALA A 210 SHEET 3 AA2 4 HIS A 228 THR A 230 -1 O THR A 230 N LEU A 154 SHEET 4 AA2 4 THR A 291 SER A 293 1 O SER A 293 N ILE A 229 SHEET 1 AA3 2 ARG A 170 ALA A 173 0 SHEET 2 AA3 2 SER A 189 PRO A 192 1 O THR A 191 N VAL A 171 SSBOND 1 CYS A 185 CYS A 304 1555 1555 2.02 SITE 1 AC1 1 ARG A 95 SITE 1 AC2 3 THR A 34 SER A 35 LEU A 36 SITE 1 AC3 1 SER A 138 SITE 1 AC4 2 LEU A 65 HOH A 642 SITE 1 AC5 4 LEU A 71 LEU A 77 HIS A 80 HOH A 546 SITE 1 AC6 1 SER A 138 SITE 1 AC7 1 GLU A 254 SITE 1 AC8 2 PHE A 110 HOH A 649 SITE 1 AC9 1 THR A 116 SITE 1 AD1 1 SER A 136 SITE 1 AD2 2 GLN A 157 IOD A 417 SITE 1 AD3 1 IOD A 416 SITE 1 AD4 2 TRP A 195 SER A 220 SITE 1 AD5 1 SER A 314 SITE 1 AD6 2 SER A 29 SER A 194 SITE 1 AD7 1 PHE A 145 SITE 1 AD8 2 LYS A 64 LEU A 193 SITE 1 AD9 1 HOH A 587 CRYST1 67.820 67.820 156.351 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014745 0.008513 0.000000 0.00000 SCALE2 0.000000 0.017026 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006396 0.00000